Publications

Number
Publication
1Diosady, L. L.; Sleggs, P.; Kaji, T., Chemical degumming of canola oils. J. Am. Oil Chem. Soc. 1982, 59 (7), 313-316. https://doi.org/10.1007/BF02662234

2Kulakova, S. M.; Yakunin, A. F.; Gogotov, I. N., Resistance of hydrogenase and nitrogenase of purple bacteria to oxygen and products of its reduction. Prikladnaya Biokhimiya i Mikrobiologiya 1982, 18 (3), 324-330.

3Tsygankov, A. A.; Yakunin, A. F.; Gogotov, I. N., Hydrogenase activity of Rhodopseudomonas capsulata growing in organic media. Mikrobiologiya 1982, 51 (4), 533-537.

4Diosady, L. L.; Rubin, L. J.; Ting, N.; Trass, O., Rapid extraction of canola oil. J. Am. Oil Chem. Soc. 1983, 60 (9), 1658-1661. https://doi.org/10.1007/BF02662427

5Sefton, M. V.; Horvath, V.; Allen, D. G.; Zingg, W., Insulin delivery from an implanted controlled release micropump in pancreatectomized dogs. Trans. Am. Soc. Artif. Intern. Organs 1983, 29 (1), 714-718.

6Tsygankov, A. A.; Yakunin, A. F.; Gogotov, I. N., The effect of pO2 on the growth and hydrogenase and nitrogenase activities of Rhodopseudomonas capsulata and Azotobacter vinelandii cells. Mikrobiologiya 1983, 52 (4), 543-547.

7Yakunin, A. F.; Gogotov, I. N., Properties and regulation of synthesis of two ferredoxins from Rhodopseudomonas capsulata. BBA - Bioenergetics 1983, 725 (2), 298-308. https://doi.org/10.1016/0005-2728(83)90203-7

8Davidson, V. J.; Paton, D.; Diosady, L. L.; Larocque, G., Degradation of wheat starch in a single screw extruder: Characteristics of extruded starch polymers. J. Food Sci. 1984, 49 (2), 453-458. https://doi.org/10.1111/j.1365-2621.1984.tb12441.x

9Davidson, V. J.; Paton, D.; Diosady, L. L.; Rubin, L. J., A model for mechanical degradation of wheat starch in a single‐screw extruder. J. Food Sci. 1984, 49 (4), 1154-1157. https://doi.org/10.1111/j.1365-2621.1984.tb10416.x

10Diosady, L. L.; Sleggs, P. W.; Kaji, T., Scale-up of canola oil degumming. J. Am. Oil Chem. Soc. 1984, 61 (8), 1366-1369. https://doi.org/10.1007/BF02542244

11Shahidi, F.; Naczk, M.; Rubin, L. J.; Diosady, L. L., Functional properties of blood globin. J. Food Sci. 1984, 49 (2), 370-372. https://doi.org/10.1111/j.1365-2621.1984.tb12424.x

12Yakunin, A. F.; Gogotov, I. N., The activity of two forms of nitrogenase from Rhodopseudomonas capsulata in the presence of different electron donors. FEMS Microbiol. Lett. 1984, 23 (2-3), 217-220.

13Bello, C.; Diosady, L. L.; Graydon, W. F.; Rubin, L. J., Homogeneous catalytic hydrogenation of canola oil using a ruthenium catalyst. Journal of the American Oil Chemists’ Society 1985, 62 (11), 1587-1592. https://doi.org/10.1007/BF02541693

14Caceres, L.; Diosady, L. L.; Graydon, W. F.; Rubin, L. J., Supported gold catalysis in the hydrogenation of canola oil. J. Am. Oil Chem. Soc. 1985, 62 (5), 906-910. https://doi.org/10.1007/BF02541755

15Diosady, L. L.; Naczk, M.; Rubin, L. J., The effect of ammonia concentration on the properties of canola meals produced by the ammonia-methanol/hexane extraction system. Food Chem. 1985, 18 (2), 121-130. https://doi.org/10.1016/0308-8146(85)90135-9

16Diosady, L. L.; Paton, D.; Rosen, N.; Rubin, L. J.; Athanassoulias, C., Degradation of wheat starch in a single‐screw extruder: Mechano‐kinetic breakdown of cooked starch. J. Food Sci. 1985, 50 (6), 1697-1699. https://doi.org/10.1111/j.1365-2621.1985.tb10568.x

17Naczk, M.; Diosady, L. L.; Rubin, L. J., Functional properties of canola meals produced by a two‐phase solvent extraction system. J. Food Sci. 1985, 50 (6), 1685-1688. https://doi.org/10.1111/j.1365-2621.1985.tb10565.x

18Shahidi, F.; Rubin, L. J.; Diosady, L. L.; Wood, D. F., Effect of sulfanilamide on the TBA values of cured meats. J. Food Sci. 1985, 50 (1), 274-275. https://doi.org/10.1111/j.1365-2621.1985.tb13332.x

19Shahidi, F.; Rubin, L. J.; Diosady, L. L.; Wood, D. F., Preparation of the cooked cured‐meat pigment, dinitrosyl ferrohemochrome, from gemin and nitric oxide. J. Food Sci. 1985, 50 (1), 272-273. https://doi.org/10.1111/j.1365-2621.1985.tb13331.x

20Yakunin, A. F.; Tsygankov, A. A.; Gogotov, I. N., Ratio of two forms of nitrogenase and the effect of its turnoff in cells of Rhodopseudomonas capsulata grown under conditions of ammonium limitation. Dokl. Biochem. 1985, 281 (1-6), 79-82.

21Allen, D. G.; Sefton, M. V., A model of insulin delivery by a controlled release micropump. Ann. Biomed. Eng. 1986, 14 (3), 257-276. https://doi.org/10.1007/BF00000004

22Diosady, L. L.; Rubin, L. J.; Tar, C. G.; Etkin, B., Air classification of rapeseed meal using the tervel separator. Can. J. Chem. Eng. 1986, 64 (5), 768-774. https://doi.org/10.1002/cjce.5450640508

23Hsu, N.; Diosady, L. L.; Graydon, W. F.; Rubin, L. J., Heterogeneous catalytic hydrogenation of canola oil using palladium. J. Am. Oil Chem. Soc. 1986, 63 (8), 1036-1042. https://doi.org/10.1007/BF02673794

24Naczk, M.; Diosady, L. L.; Rubin, L. J., The phytate and complex phenol content of meals produced by alkanol-ammonia/hexane extraction of canola. LWT - Food Science and Technology 1986, 19 (1), 13-16.

25Rubin, L. J.; Köseoglu, S. S.; Diosady, L. L.; Graydon, W. F., Hydrogenation of canola oil in the presence of nickel and the methyl benzoate-chrome carbonyl complex. J. Am. Oil Chem. Soc. 1986, 63 (12), 1551-1557. https://doi.org/10.1007/BF02553083

26Saville, B. A.; Gray, M. R.; Tam, Y. K., The metabolism of lidocaine in the liver: Steady‐state and dynamic modelling. Can. J. Chem. Eng. 1986, 64 (4), 617-624. https://doi.org/10.1002/cjce.5450640412

27Shahidi, F.; Rubin, L. J.; Diosady, L. L.; Kassam, N.; Fong, J. C. L. S.; Wood, D. F., Effect of sequestering agents on lipid oxidation in cooked meats. Food Chem. 1986, 21 (2), 145-152. https://doi.org/10.1016/0308-8146(86)90159-7

28Allen, D. G.; Robinson, C. W., The influence of "slip" on rheological measurements on a mycelial broth of Aspergillus niger. Ann. N. Y. Acad. Sci. 1987, 506, 589-99. https://doi.org/10.1111/j.1749-6632.1987.tb23853.x

29Gray, M. R.; Saville, B. A.; Tam, Y. K., Mechanisms of lidocaine kinetics in the isolated perfused rat liver. III. Evaluation of liver models for time-dependent behavior. Drug Metab. Disposition 1987, 15 (1), 22-26.

30Moo‐Young, M.; Halard, B.; Allen, D. G.; Burrell, R.; Kawase, Y., Oxygen transfer to mycelial fermentation broths in an airlift fermentor. Biotechnology and Bioengineering 1987, 30 (6), 746-753. https://doi.org/10.1002/bit.260300607

31Saville, B. A.; Gray, M. R.; Tam, Y. K., Mechanisms of lidocaine kinetics in the isolated perfused rat liver. II. Kinetics of steady state elimination. Drug Metab. Disposition 1987, 15 (1), 17-21.

32Tzeng, Y. M.; Diosady, L. L.; Rubin, L. J., Preparation of rapeseed protein isolate by sodium hexametaphosphate extraction, ultrafiltration, diafiltration, and ion‐exchange. J. Food Sci. 1988, 53 (5), 1537-1541. https://doi.org/10.1111/j.1365-2621.1988.tb09318.x

33Yakunin, A. F.; Gogotov, I. N., Formation of two forms of nitrogenase and effects of its switch-off by ammonia in purple bacteria. Microbiol. Sci. 1988, 5 (3), 78-81.

34Allen, D. G.; Robinson, C. W., Hydrodynamics and mass transfer in Aspergillus niger fermentations in bubble column and loop bioreactors. Biotechnology and Bioengineering 1989, 34 (6), 731-740. https://doi.org/10.1002/bit.260340602

35Bernstein, P. A.; Graydon, W. F.; Diosady, L. L., Hydrogenation of canola oil using chromium catalysts. J. Am. Oil Chem. Soc. 1989, 66 (5), 680-684. https://doi.org/10.1007/BF02669951

36Ch'ang, W. N.; Yakunin, A. F.; Gogotov, I. N., The ability of the free-living cyanobacterium Anabaena azollae to synthesize alternative nitrogenases. Dokl. Biochem. 1989, 309 (1-6), 361-363.

37Diosady, L. L.; Tar, C. G.; Rubin, L. J.; Sidaway-Wolf, D., Use of liquid cyclones in extraction of oil from ground canola seed. Transactions of the American Society of Agricultural Engineers 1989, 32 (5), 1754-1758.

38Hsu, N.; Diosady, L. L.; Rubin, L. J., Catalytic behavior of palladium in the hydrogenation of edible oils II. Geometrical and positional isomerization characteristics. J. Am. Oil Chem. Soc. 1989, 66 (2), 232-236. https://doi.org/10.1007/BF02546066

39Saville, B. A.; Gray, M. R.; Tam, Y. K., Evidence for lidocaine‐lnduced enzyme inactivation. J. Pharm. Sci. 1989, 78 (12), 1003-1008. https://doi.org/10.1002/jps.2600781207

40Tar, C. G.; Diosady, L. L.; Rubin, L. J.; Sidaway-Wolf, D. M., Simultaneous grinding and extraction of canola in the Szego mill using methanol/ammonia/water and hexane. Transactions of the American Society of Agricultural Engineers 1989, 32 (2), 751-755.

41Yakunin, A. F.; Ch'ang Wang, N.; Gogotov, I. N., Formation of alternative nitrogenases of the heterocystic cyanobacterium Anabaena variabilis. Dokl. Biochem. 1989, 307 (1-6), 239-240.

42Carbohydrate PolymersChan Van, N.; Yakunin, A. F.; Gogotov, I. N., The effect of molybdenum, vanadium and tungsten on the growth of a free-living Anabaena azollae cyanobacterium and on its synthesis of nitrogenase. Mikrobiologiya 1990, 59 (4), 583-586.

43Chan Van, N.; Yakunin, A. F.; Gogotov, I. N., The effect of bound nitrogen forms on the growth and synthesis of different nitrogenases in Anabaena variabilis. Mikrobiologiya 1990, 59 (3), 394-398.

44Tzeng, Y. M.; Diosady, L. L.; Rubin, L. J., Production of canola protein materials by alkaline extraction, precipitation, and membrane processing. J. Food Sci. 1990, 55 (4), 1147-1151. https://doi.org/10.1111/j.1365-2621.1990.tb01619.x

45Yakunin, A. F.; Chan, K.; Gogotov, I. N., The effect of molybdenum on the growth, nitrogenase and nitrate reductase activities of the heterocystic cyanobacterium Anabaena sphaerica. Mikrobiologiya 1990, 59 (6), 956-961.

46Yakunin, A. F.; Chan, K.; Gogotov, I. N., The growth, nitrogenase and nitrate reductase activities of Anabaena sphaerica at a deficiency of certain ions in the medium. Mikrobiologiya 1990, 59 (5), 771-776.

47Yakunin, A. F.; Chan, K.; Laurinavichene, T. V.; Gogotov, I. N., Purification and properties of two ferredoxins from the nitrogen-fixing heterocystous cyanobacterium Anabaena sphaerica. Biokhimiya 1990, 55 (1), 80-86.

48Allen, D. G.; Robinson, C. W., Comments on the communication: On the calculation of shear rate and apparent viscosity in airlift and bubble column bioreactors. Biotechnology and Bioengineering 1991, 38 (2), 212-216. https://doi.org/10.1002/bit.260380214

49Allen, D. G.; Robinson, C. W., The prediction of transport parameters in filamentous fermentation broths based on results obtained in pseudoplastic polymer solutions. The Canadian Journal of Chemical Engineering 1991, 69 (2), 498-505. https://doi.org/10.1002/cjce.5450690214

50Ramarathnam, N.; Rubin, L. J.; Diosady, L. L., Studies on meat flavor. 1. Qualitative and quantitative differences in uncured and cured pork. Journal of Agricultural and Food Chemistry 1991, 39 (2), 344-350.

51Ramarathnam, N.; Rubin, L. J.; Diosady, L. L., Studies on meat flavor. 2. A quantitative investigation of the volatile carbonyls and hydrocarbons in uncured and cured beef and chicken. Journal of Agricultural and Food Chemistry 1991, 39 (10), 1839-1847.

52Tomar, P.; Allen, D. G., Removal of organochlorines from kraft pulp mill effluent by an aerated logoon. Water pollution research journal of Canada 1991, 26 (1), 101-117.

53Ackerman, J. D.; Ethier, C. R.; Allen, D. G.; Spelt, J. K., Investigation of zebra mussel adhesion strength using rotating disks. Journal of Environmental Engineering (United States) 1992, 118 (5), 708-724. https://doi.org/10.1061/(ASCE)0733-9372(1992)118:5(708)

54Cherysh, A.; Liss, S. N.; Allen, D. G., Batch study of the aerobic and anaerobic removal of chlorinated organic compounds in an aerated lagoon. Water pollution research journal of Canada 1992, 27 (3), 621-638.

55Edwards, E. A.; Grbic-Galic, D., Complete mineralization of benzene by aquifer microorganisms under strictly anaerobic conditions. Applied and Environmental Microbiology 1992, 58 (8), 2663-2666. https://doi.org/10.1128/aem.58.8.2663-2666.1992

56Edwards, E. A.; Wills, L. E.; Reinhard, M.; Grbic-Galic, D., Anaerobic degradation of toluene and xylene by aquifer microorganisms under sulfate-reducing conditions. Applied and Environmental Microbiology 1992, 58 (3), 794-800. https://doi.org/10.1128/aem.58.3.794-800.1992

57Leong‐Poi, L.; Allen, D. G., Direct measurement of the yield stress of filamentous fermentation broths with the rotating vane technique. Biotechnology and Bioengineering 1992, 40 (3), 403-412. https://doi.org/10.1002/bit.260400310

58O'Boyle, A. R.; Aladin‐Kassam, N.; Rubin, L. J.; Diosady, L. L., Encapsulated cured‐meat pigment and its application in nitrite‐free ham. J. Food Sci. 1992, 57 (4), 807-812. https://doi.org/10.1111/j.1365-2621.1992.tb14299.x

59Saville, B. A.; Gray, M. R.; Tam, Y. K., Experimental studies of transient mass transfer and reaction in the liver: Interpretation with a heterogeneous compartment model. J. Pharm. Sci. 1992, 81 (3), 265-271. https://doi.org/10.1002/jps.2600810316

60Saville, B. A.; Gray, M. R.; Tam, Y. K., Models of hepatic drug elimination. Drug Metab. Rev. 1992, 24 (1), 49-88.

61Saville, B. A.; Persi, S., The effect of oxygen upon the kinetics of enzyme inactivation: In vitro investigations using glutamine synthetase. Can. J. Chem. Eng. 1992, 70 (6), 1143-1148. https://doi.org/10.1002/cjce.5450700614

62Adu-Peasah, S. P.; Diosady, L. L.; Rubin, L. J., A multistage hydrocyclone/stirred-tank system for countercurrent extraction of canola oil. Journal of the American Oil Chemists’ Society 1993, 70 (8), 755-762. https://doi.org/10.1007/BF02542596

63Cai, W.; Diosady, L. L., Model for gelatinization of wheat starch in a twin‐screw extruder. J. Food Sci. 1993, 58 (4), 872-875. https://doi.org/10.1111/j.1365-2621.1993.tb09380.x

64Friedrich, S. W.; Cheng, Y. L.; Saville, B. A., Theoretical corneal permeation model for ionizable drugs. J. Ocul. Pharmacol. 1993, 9 (3), 229-249.

65Fulthorpe, R. R.; Liss, S. N.; Allen, D. G., Characterization of bacteria isolated from a bleached kraft pulp mill wastewater treatment system. Can. J. Microbiol. 1993, 39 (1), 13-24.

66Ramarathnam, N.; Rubin, L. J.; Diosady, L. L., Studies on meat flavor. 3. A novel method for trapping volatile components from uncured and cured pork. Journal of Agricultural and Food Chemistry 1993, 41 (6), 933-938.

67Ramarathnam, N.; Rubin, L. J.; Diosady, L. L., Studies on meat flavor. 4. Fractionation, characterization, and quantitation of volatiles from uncured and cured beef and chicken. Journal of Agricultural and Food Chemistry 1993, 41 (6), 939-945.

68Tamagnini, P.; Yakunin, A. F.; Gogotov, I. N.; Lindblad, P., Plant-type and bacterial-type ferredoxins in a nitrogen-fixing cyanobacterium: Nostoc sp. strain PCC 73102. FEMS Microbiol. Lett. 1993, 107 (1), 37-42.

69Yakunin, A. F.; Gennaro, G.; Hallenbeck, P. C., Purification and properties of a nif-specific flavodoxin from the photosynthetic bacterium Rhodobacter capsulatus. J. Bacteriol. 1993, 175 (21), 6775-6780.

70Yakunin, A. F.; Hallenbeck, P. C.; Troshina, O. Y.; Gogotov, I. N., Purification and properties of a bacterial-type ferredoxin from the nitrogen-fixing cyanobacterium Anabaena variabilis ATCC29413. Biochim. Biophys. Acta 1993, 1163 (2), 124-130. https://doi.org/10.1016/0167-4838(93)90173-O

71Yakunin, A. F.; Hallenbeck, P. C.; Troshina, O. Y.; Gogotov, I. N., Purification and properties of a flavodoxin from the heterocystous cyanobacterium Anabaena sphaerica. Biochim. Biophys. Acta 1993, 1164 (3), 305-310. https://doi.org/10.1016/0167-4838(93)90263-Q

72Ackerman, J. D.; Wong, L.; Ethier, C. R.; Allen, D. G.; Spelt, J. K., Preston-static tubes for the measurement of wall shear stress. Journal of Fluids Engineering, Transactions of the ASME 1994, 116 (3), 645-649.

73Chiu, R.; Saville, B. A., Effect of oxygen upon the kinetics of tyrosinase inactivation. Food and Bioproducts Processing: Transactions of the Institution of of Chemical Engineers, Part C 1994, 72 (1), 41-46.

74Edwards, E. A.; Edwards, A. M.; Grbic-Galic, D., A method for detection of aromatic metabolites at very low concentrations: Application to detection of metabolites of anaerobic toluene degradation. Applied and Environmental Microbiology 1994, 60 (1), 323-327. https://doi.org/10.1128/aem.60.1.323-327.1994

75Edwards, E. A.; Grbic-Galic, D., Anaerobic degradation of toluene and o-xylene by a methanogenic consortium. Applied and Environmental Microbiology 1994, 60 (1), 313-322. https://doi.org/10.1128/aem.60.1.313-322.1994

76Fulthorpe, R. R.; Allen, D. G., Evaluation of Biolog MT plates for aromatic and chloroaromatic substrate utilization tests. Can. J. Microbiol. 1994, 40 (12), 1067-1071.

77Kautola, H. K.; Allen, D. G., Surface tension measurements on filamentous broths. Biotechnol. Tech. 1994, 8 (2), 83-86. https://doi.org/10.1007/BF00152845

78Oh, C.; Apel, A. J. G.; Saville, B. A.; Cheng, Y. L.; Rootman, D. S., Local efficacy of cyclosporine in corneal transplant therapy. Curr. Eye Res. 1994, 13 (5), 337-343. https://doi.org/10.3109/02713689409167297

79Varga, T. K.; Diosady, L. L., Simultaneous extraction of oil and antinutritional compounds from flaxseed. J. Am. Oil Chem. Soc. 1994, 71 (6), 603-607. https://doi.org/10.1007/BF02540586

80Xu, L.; Diosady, L. L., Functional properties of Chinese rapeseed protein isolates. J. Food Sci. 1994, 59 (5), 1127-1130. https://doi.org/10.1111/j.1365-2621.1994.tb08207.x

81Xu, L.; Diosady, L. L., The production of Chinese rapeseed protein isolates by membrane processing. J. Am. Oil Chem. Soc. 1994, 71 (9), 935-939. https://doi.org/10.1007/BF02542257

82Yan, G.; Allen, D. G., Biosorption of high molecular weight organochlorines in pulp mill effluent. Water Res. 1994, 28 (9), 1933-1941. https://doi.org/10.1016/0043-1354(94)90168-6

83Ackerman, J. D.; Cottrell, C. M.; Ethier, C. R.; Allen, D. G.; Spelt, J. K., A wall jet to measure the attachment strength of zebra mussels. Can. J. Fish. Aquat. Sci. 1995, 52 (1), 126-135. https://doi.org/10.1139/f95-012

84Apel, A.; Oh, C.; Chiu, R.; Saville, B.; Cheng, Y. L.; Rootman, D., A subconjunctival degradable implant for cyclosporine delivery in corneal transplant therapy. Curr. Eye Res. 1995, 14 (8), 659-667. https://doi.org/10.3109/02713689508998493

85Cai, W.; Diosady, L. L.; Rubin, L. J., Degradation of wheat starch in a twin-screw extruder. J. Food Eng. 1995, 26 (3), 289-300. https://doi.org/10.1016/0260-8774(94)00056-F

86Fichtali, J.; van de Voort, F. R.; Diosady, L. L., Performance evaluation of acid casein neutralization process by twin-screw extrusion. J. Food Eng. 1995, 26 (3), 301-318. https://doi.org/10.1016/0260-8774(94)00058-H

87Fulthorpe, R. R.; Allen, D. G., A comparison of organochlorine removal from bleached kraft pulp and paper-mill effluents by dehalogenating Pseudomonas, Ancylobacter and Methylobacterium strains. Applied Microbiology and Biotechnology 1995, 42 (5), 782-789. https://doi.org/10.1007/BF00171962

88Kamilakis, E. G.; Allen, D. G., Cultivating filamentous microorganisms in a cyclone bioreactor: The influence of pumping on cell morphology. Process Biochem. 1995, 30 (4), 353-360. https://doi.org/10.1016/0032-9592(95)87044-X

89Liu, J.; Shi, M.; Diosady, L. L.; Rubin, L. J., Three-phase extraction of Chinese rapeseed using the Karr column. J. Food Eng. 1995, 24 (1), 35-45. https://doi.org/10.1016/0260-8774(94)P1606-X

90Mohseni, M.; Allen, D. G., The effect of particle morphology and concentration on the directly measured yield stress in filamentous suspensions. Biotechnology and Bioengineering 1995, 48 (3), 257-265. https://doi.org/10.1002/bit.260480312

91Oh, C.; Saville, B. A.; Cheng, Y. L.; Rootman, D. S., A compartmental model for the occular pharmacokinetics of cyclosporine in rabbits. Pharmaceutical Research: An Official Journal of the American Association of Pharmaceutical Scientists 1995, 12 (3), 433-437. https://doi.org/10.1023/A:1016268922035

92Pasko, A.; Adzhiev, V.; Sourin, A.; Savchenko, V., Function representation in geometric modeling: concepts, implementation and applications. The Visual Computer 1995, 11 (8), 429-446. https://doi.org/10.1007/BF02464333

93Ackerman, J. D.; Cottrell, C. M.; Ethier, C. R.; Allen, D. G.; Spelt, J. K., Attachment strength of zebra mussels on natural, polymeric, and metallic materials. J. Environ. Eng. 1996, 122 (2), 141-148.

94Diosady, L. L.; Rizvi, S. S. H.; Cai, W.; Jagdeo, D. J., Moisture sorption isotherms of canola meals, and applications to packaging. J. Food Sci. 1996, 61 (1), 204-208.

95Friedrich, S. W.; Saville, B. A.; Cheng, Y. L., Finite element modelling of drug distribution in the vitreous humour of the eye. Invest. Ophthalmol. Vis. Sci. 1996, 37 (3).

96Friedrich, S. W.; Saville, B. A.; Cheng, Y. L.; Rootman, D. S., Pharmacokinetic differences between ocular inserts and eyedrops. J. Ocul. Pharmacol. Ther. 1996, 12 (1), 5-18.

97Gennaro, G.; Hübner, P.; Sandmeier, U.; Yakunin, A. F.; Hallenbeck, P. C., Cloning, characterization, and regulation of nifF from Rhodobacter capsulatus. J. Bacteriol. 1996, 178 (13), 3949-3952.

98Jimenez Hamann, M. C.; Saville, B. A., Enhancement of tyrosinase stability by immobilization on Nylon 66. Food and Bioproducts Processing: Transactions of the Institution of of Chemical Engineers, Part C 1996, 74 (1), 47-52.

99Victorio, L.; Gilbride, K. A.; Allen, D. G.; Liss, S. N., Phenotypic fingerprinting of microbial communities in wastewater treatment systems. Water Res. 1996, 30 (5), 1077-1086. https://doi.org/10.1016/0043-1354(95)00269-3

100Zheng, Y.; Allen, D. G., Biological dechlorination of model organochlorine compounds in bleached kraft mill effluents. Environ. Sci. Technol. 1996, 30 (6), 1890-1895. https://doi.org/10.1021/es950527p

101Diosady, L. L.; Alberti, J. O.; Mannar, M. G. V.; Stone, T. G., Stability of iodine in iodized salt used for correction of iodine-deficiency disorders. Food Nutr. Bull. 1997, 18 (4), 388-396.

102Dong, G.; Vieille, C.; Savchenko, A.; Zeikus, J. G., Cloning, sequencing, and expression of the gene encoding extracellular α-amylase from Pyrococcus furiosus and biochemical characterization of the recombinant enzyme. Applied and Environmental Microbiology 1997, 63 (9), 3569-3576.

103Friedrich, S.; Cheng, Y. L.; Saville, B., Drug distribution in the vitreous humor of the human eye: The effects of intravitreal injection position and volume. Curr. Eye Res. 1997, 16 (7), 663-669. https://doi.org/10.1076/ceyr.16.7.663.5061

104Friedrich, S.; Cheng, Y. L.; Saville, B., Finite element modeling of drug distribution in the vitreous humor of the rabbit eye. Ann. Biomed. Eng. 1997, 25 (2), 303-314. https://doi.org/10.1007/BF02648045

105Friedrich, S.; Saville, B.; Cheng, Y. L., Drug distribution in the vitreous humor of the human eye: The effects of aphakia and changes in retinal permeability and vitreous diffusivity. J. Ocul. Pharmacol. Ther. 1997, 13 (5), 445-459.

106Liu, H.-W.; Liss, S. N.; Allen, D. G., The influence of anoxic conditioning of sludge on enhanced AOX (adsorbable organic halogen) removal in aerobic biological treatment systems. Water Sci. Technol. 1997, 35 (2), 77-84. https://doi.org/https://doi.org/10.1016/S0273-1223(96)00917-1

107Mohseni, M.; Kautola, H.; Allen, D. G., The viscoelastic nature of filamentous fermentation broths and its influence on the directly measured yield stress. Journal of Fermentation and Bioengineering 1997, 83 (3), 281-286. https://doi.org/10.1016/S0922-338X(97)80993-2

108Thobani, M.; Diosady, L. L., Two-phase solvent extraction of canola. J. Am. Oil Chem. Soc. 1997, 74 (3), 207-214. https://doi.org/https://doi.org/10.1007/s11746-997-0125-x

109Thobani, M.; Diosady, L. L., Pilot-scale two-phase extraction of canola. J. Am. Oil Chem. Soc. 1997, 74 (3), 201-206. https://doi.org/10.1007/s11746-997-0124-y

110Tripathi, C. S.; Allen, D. G., Kinetics of organochlorine removal from bleached kraft pulp mill effluent during biological treatment. Can. J. Chem. Eng. 1997, 75 (1), 104-112.

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112Yakunin, A. F.; Hallenbeck, P. C., Regulation of synthesis of pyruvate carboxylase in the photosynthetic bacterium Rhodobacter capsulatus. J. Bacteriol. 1997, 179 (5), 1460-1468.

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117Master, E. R.; Mohn, W. W., Psychrotolerant bacteria isolated from Arctic soil that degrade polychlorinated biphenyls at low temperatures. Applied and Environmental Microbiology 1998, 64 (12), 4823-4829.

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130Mohseni, M.; Allen, D. G., Transient performance of biofilters treating mixtures of hydrophilic and hydrophobic volatile organic compounds. Journal of the Air and Waste Management Association 1999, 49 (12), 1434-1441.

131Mollah, A. H.; Allen, D. G., Biodegradation and detoxification of wood leachate from pentachlorophenol-treated poles. Can. J. Chem. Eng. 1999, 77 (5), 942-947.

132Warrington, J. C.; Saville, B. A., The effect of a perfluorochemical emulsion on enzyme reaction stability. Can. J. Chem. Eng. 1999, 77 (5), 877-882.

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138Balke, D. T.; Diosady, L. L., Rapid aqueous extraction of mucilage from whole white mustard seed. Food Res. Int. 2000, 33 (5), 347-356. https://doi.org/10.1016/S0963-9969(00)00055-7

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140Bloom, Y.; Aravena, R.; Hunkeler, D.; Edwards, E.; Frape, S. K., Carbon isotope fractionation during microbial dechlorination of trichloroethene, cis-l,2-dichloroethene, and vinyl chloride: Implications for assessment of natural attenuation. Environ. Sci. Technol. 2000, 34 (13), 2768-2772. https://doi.org/10.1021/es991179k

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142Keech, G. W.; Whiting, P.; Allen, D. G., Effect of paper machine additives on the health of activated sludge. Tappi J. 2000, 83 (3), 86-93.

143Liao, B. Q.; Allen, D. G.; Droppo, I. G.; Leppard, G. G.; Liss, S. N., Bound water content of activated sludge and its relationship to solids retention time, floc structure, and surface properties. Water Environment Research 2000, 72 (6-7), 722-730.

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145Shi, G.; Gong, Y.; Savchenko, A.; Zeikus, J. G.; Xiao, B.; Ji, X.; Yan, H., Dissecting the nucleotide binding properties of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase with fluorescent 3'(2)'-o-anthraniloyladenosine 5'-triphosphate. Biochim. Biophys. Acta 2000, 1478 (2), 289-299. https://doi.org/10.1016/S0167-4838(00)00043-1

146Ward, J. A. M.; Ahad, J. M. E.; Lacrampe-Couloume, G.; Slater, G. F.; Edwards, E. A.; Lollar, B. S., Hydrogen isotope fractionation during methanogenic degradation of toluene: Potential for direct verification of bioremediation. Environ. Sci. Technol. 2000, 34 (21), 4577-4581. https://doi.org/10.1021/es001128j

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151Konduru, R. R.; Liss, S. N.; Allen, D. G., Recalcitrant organics emerging from biological treatment of kraft mill effluents. Water Qual. Res. J. Can. 2001, 36 (4), 737-757.

152Kong, Z.; Farhana, L.; Fulthorpe, R. R.; Allen, D. G., Treatment of volatile organic compounds in a biotrickling filter under thermophilic conditions. Environ. Sci. Technol. 2001, 35 (21), 4347-4352. https://doi.org/10.1021/es010639i

153Liao, B. Q.; Allen, D. G.; Droppo, I. G.; Leppard, G. G.; Liss, S. N., Surface properties of sludge and their role in bioflocculation and settleability. Water Res. 2001, 35 (2), 339-350. https://doi.org/10.1016/S0043-1354(00)00277-3

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156Morgan-Sagastume, F.; Sleep, B. E.; Allen, D. G., Effects of biomass growth on grass pressure drop in biofilters. J. Environ. Eng. 2001, 127 (5), 388-396. https://doi.org/10.1061/(ASCE)0733-9372(2001)127:5(388)

157Savchenko, A.; Vieille, C.; Zeikus, J. G., α-Amylases and amylopullulanase from Pyrococcus furiosus. In Methods Enzymol., Academic Press: 2001; Vol. 330, pp 354-363. https://doi.org/https://doi.org/10.1016/S0076-6879(01)30388-9

158Savchenko, A.; Wang, W.; Vieille, C.; Zeikus, J. G., [26] Alkaline phosphatase from Thennotoga neapolitana. In Methods Enzymol., Academic Press: 2001; Vol. 331, pp 298-305. https://doi.org/https://doi.org/10.1016/S0076-6879(01)31067-4

159Slater, G. F.; Lollar, B. S.; Sleep, B. E.; Edwards, E. A., Variability in carbon isotopic fractionation during biodegradation of chlorinated ethenes: Implications for field applications. Environ. Sci. Technol. 2001, 35 (5), 901-907. https://doi.org/10.1021/es001583f

160Vieille, C.; Sriprapundh, D.; Savchenko, A.; Kang, S.; Krishnamurthy, H.; Gregory Zeikus, J., Thermostability mechanisms in enzymes from Thermotoga neapolitana and Pyrococcus furiosus. J. Microbiol. 2001, 39 (4), 245-249.

161Yakunin, A. F.; Fedorov, A. S.; Laurinavichene, T. V.; Glaser, V. M.; Egorov, N. S.; Tsygankov, A. A.; Zinchenko, V. V.; Hallenbeck, P. C., Regulation of nitrogenase in the photosynthetic bacterium Rhodobacter sphaeroides containing draTG and nifHDK genes from Rhodobacter capsulatus. Can. J. Microbiol. 2001, 47 (3), 206-212. https://doi.org/10.1139/cjm-47-3-206

162Zhang, R. G.; Skarina, T.; Katz, J. E.; Beasley, S.; Khachatryan, A.; Vyas, S.; Arrowsmith, C. H.; Clarke, S.; Edwards, A.; Joachimiak, A.; Savchenko, A., Structure of Thermotoga maritima stationary phase survival protein SurE: A novel acid phosphatase. Structure 2001, 9 (11), 1095-1106. https://doi.org/10.1016/S0969-2126(01)00675-X

163Diosady, L. L.; Alberti, J. O.; Ramcharan, K.; Venkatesh Mannar, M. G., Iodine stability in salt double-fortified with iron and iodine. Food Nutr. Bull. 2002, 23 (2), 196-207.

164Diosady, L. L.; Alberti, J. O.; Venkatesh Mannar, M. G., Microencapsulation for iodine stability in salt fortified with ferrous fumarate and potassium iodide. Food Res. Int. 2002, 35 (7), 635-642. https://doi.org/10.1016/S0963-9969(01)00166-1

165Duhamel, M.; Wehr, S. D.; Yu, L.; Rizvi, H.; Seepersad, D.; Dworatzek, S.; Cox, E. E.; Edwards, E. A., Comparison of anaerobic dechlorinating enrichment cultures maintained on tetrachloroethene, trichloroethene, cis-dichloroethene and vinyl chloride. Water Res. 2002, 36 (17), 4193-4202. https://doi.org/10.1016/S0043-1354(02)00151-3

166Kim, Y.; Skarina, T.; Beasley, S.; Laskowski, R.; Arrowsmith, C.; Joachimiak, A.; Edwards, A.; Savchenko, A., Crystal structure of Escherichia coli EC1530, a glyoxylate induced protein YgbM. Proteins: Structure, Function and Genetics 2002, 48 (2), 427-430. https://doi.org/10.1002/prot.10160

167Korolev, S.; Ikeguchi, Y.; Skarina, T.; Beasley, S.; Arrowsmith, C.; Edwards, A.; Joachimiak, A.; Pegg, A. E.; Savchenko, A., The crystal structure of spermidine synthase with a multisubstrate adduct inhibitor. Nat. Struct. Biol. 2002, 9 (1), 27-31. https://doi.org/10.1038/nsb737

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169Liao, B. Q.; Allen, D. G.; Leppard, G. G.; Droppo, I. G.; Liss, S. N., Interparticle interactions affecting the stability of sludge flocs. Journal of Colloid and Interface Science 2002, 249 (2), 372-380. https://doi.org/10.1006/jcis.2002.8305

170Liss, S. N.; Liao, B. Q.; Droppo, I. G.; Allen, D. G.; Leppard, G. G., Effect of solids retention time on floc structure. Water Sci Technol 2002, 46 (1-2), 431-8.

171Mahadevan, R.; Doyle Iii, F. J.; Allcock, A. C., Control-relevant scheduling of polymer grade transitions. AIChE Journal 2002, 48 (8), 1754-1764. https://doi.org/10.1002/aic.690480816

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173Major, D. W.; McMaster, M. L.; Cox, E. E.; Edwards, E. A.; Dworatzek, S. M.; Hendrickson, E. R.; Starr, M. G.; Payne, J. A.; Buonamici, L. W., Field demonstration of successful bioaugmentation to achieve dechlorination of tetrachloroethene to ethene. Environ. Sci. Technol. 2002, 36 (23), 5106-5116. https://doi.org/10.1021/es0255711

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179Xu, L.; Diosady, L. L., Removal of phenolic compounds in the production of high-quality canola protein isolates. Food Res. Int. 2002, 35 (1), 23-30. https://doi.org/10.1016/S0963-9969(00)00159-9

180Yakunin, A. F.; Hallenbeck, P. C., AmtB is necessary for NH4+-induced nitrogenase switch-off and ADP-ribosylation in Rhodobacter capsulatus. J. Bacteriol. 2002, 184 (15), 4081-4088. https://doi.org/10.1128/JB.184.15.4081-4088.2002

181Yang, H.; Minuth, B.; Allen, D. G., Effects of nitrogen and oxygen on biofilter performance. Journal of the Air and Waste Management Association 2002, 52 (3), 279-286.

182Zhang, R. G.; Kim, Y.; Skarina, T.; Beasley, S.; Laskowski, R.; Arrowsmith, C.; Edwards, A.; Joachimiak, A.; Savchenko, A., Crystal structure of Thermotoga maritima 0065, a member of the IclR transcriptional factor family. J. Biol. Chem. 2002, 277 (21), 19183-19190. https://doi.org/10.1074/jbc.M112171200

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184Apruzzese, F.; Pato, J.; Balke, S. T.; Diosady, L. L., In-line measurement of residence time distribution in a co-rotating twin-screw extruder. Food Res. Int. 2003, 36 (5), 461-467. https://doi.org/10.1016/S0963-9969(02)00193-X

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186Dennis, P.; Edwards, E. A.; Liss, S. N.; Fulthorpe, R., Monitoring gene expression in mixed microbial communities by using DNA microarrays. Applied and Environmental Microbiology 2003, 69 (2), 769-778. https://doi.org/10.1128/AEM.69.2.769-778.2003

187Dirk-Faitakis, C.; Allen, D. G., Biofiltration of cyclic air emissions of α-pinene at low and high frequencies. Journal of the Air and Waste Management Association 2003, 53 (11), 1373-1383.

188Drepper, T.; Groß, S.; Yakunin, A. F.; Hallenbeck, P. C.; Masepohl, B.; Klipp, W., Role of GlnB and GlnK in ammonium control of both nitrogenase systems in the phototrophic bacterium Rhodobacter capsulatus. Microbiology 2003, 149 (8), 2203-2212.

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190Henriksson, H.; Denman, S. E.; Campuzano, I. D. G.; Ademark, P.; Master, E. R.; Teeri, T. T.; Brumer Iii, H., N-linked glycosylation of native and recombinant cauliflower xyloglucan endotransglycosylase 16A. Biochemical Journal 2003, 375 (1), 61-73. https://doi.org/10.1042/BJ20030485

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196Mancini, S. A.; Ulrich, A. C.; Lacrampe-Couloume, G.; Sleep, B.; Edwards, E. A.; Lollar, B. S., Carbon and hydrogen isotopic fractionation during anaerobic biodegradation of benzene. Applied and Environmental Microbiology 2003, 69 (1), 191-198. https://doi.org/10.1128/AEM.69.1.191-198.2003

197McGuigan, A. P.; Briggs, G. A. D.; Burlakov, V. M.; Yanaka, M.; Tsukahara, Y., An elastic–plastic shear lag model for fracture of layered coatings. Thin Solid Films 2003, 424 (2), 219-223. https://doi.org/https://doi.org/10.1016/S0040-6090(02)01124-0

198Miller, D. J.; Ouellette, N.; Evdokimova, E.; Savchenko, A.; Edwards, A.; Anderson, W. F., Crystal complexes of a predicted S-adenosylmethionine-dependent methyltransferase reveal a typical AdoMet binding domain and a substrate recognition domain. Protein Sci. 2003, 12 (7), 1432-1442. https://doi.org/10.1110/ps.0302403

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200Sanishvili, R.; Yakunin, A. F.; Laskowski, R. A.; Skarina, T.; Evdokimova, E.; Doherty-Kirby, A.; Lajoie, G. A.; Thornton, J. M.; Arrowsmith, C. H.; Savchenko, A.; Joachimiak, A.; Edwards, A. M., Integrating structure, bioinformatics, and enzymology to discover function: BioH, a new carboxylesterase from Escherichia coli. J. Biol. Chem. 2003, 278 (28), 26039-26045. https://doi.org/10.1074/jbc.M303867200

201Savchenko, A.; Yee, A.; Khachatryan, A.; Skarina, T.; Evdokimova, E.; Pavlova, M.; Semesi, A.; Northey, J.; Beasley, S.; Lan, N.; Das, R.; Gerstein, M.; Arrowmith, C. H.; Edwards, A. M., Strategies for structural proteomics of prokaryotes: Quantifying the advantages of studying orthologous proteins and of using both NMR and X-ray crystallography approaches. Proteins: Structure, Function and Genetics 2003, 50 (3), 392-399. https://doi.org/10.1002/prot.10282

202Seetharam, G. B.; Saville, B. A., Degradation of phenol using tyrosinase immobilized on siliceous supports. Water Res. 2003, 37 (2), 436-440. https://doi.org/10.1016/S0043-1354(02)00290-7

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204Tao, X.; Khayat, R.; Christendat, D.; Savchenko, A.; Xu, X.; Goldsmith-Fischman, S.; Honig, B.; Edwards, A.; Arrowsmith, C. H.; Tong, L., Crystal structures of MTH1187 and its yeast ortholog YBL001c. Proteins: Structure, Function and Genetics 2003, 52 (3), 478-480. https://doi.org/10.1002/prot.10443

205Ulrich, A. C.; Edwards, E. A., Physiological and molecular characterization of anaerobic benzene-degrading mixed cultures. Environ. Microbiol. 2003, 5 (2), 92-102. https://doi.org/10.1046/j.1462-2920.2003.00390.x

206Vieille, C.; Krishnamurthy, H.; Hyun, H. H.; Savchenko, A.; Yan, H.; Zeikus, J. G., Thermotoga neapolitana adenylate kinase is highly active at 30°c. Biochemical Journal 2003, 372 (2), 577-585. https://doi.org/10.1042/BJ20021377

207Wiback, S. J.; Mahadevan, R.; Palsson, B. Ø., Reconstructing metabolic flux vectors from extreme pathways: Defining the α-spectrum. J. Theor. Biol. 2003, 224 (3), 313-324. https://doi.org/10.1016/S0022-5193(03)00168-1

208Wright, A. J.; Mihele, A. L.; Diosady, L. L., Cis selectivity of mixed catalyst systems in canola oil hydrogenation. Food Res. Int. 2003, 36 (8), 797-804. https://doi.org/10.1016/S0963-9969(03)00074-7

209Wright, A. J.; Wong, A.; Diosady, L. L., Ni catalyst promotion of a Cis-selective Pd catalyst for canola oil hydrogenation. Food Res. Int. 2003, 36 (9-10), 1069-1072. https://doi.org/10.1016/j.foodres.2003.08.005

210Xu, L.; Lui, F.; Luo, H.; Diosady, L. L., Production of protein isolates from yellow mustard meals by membrane processes. Food Res. Int. 2003, 36 (8), 849-856. https://doi.org/10.1016/S0963-9969(03)00082-6

211Yang, Z.; Savehenko, A.; Yakunin, A.; Zhang, R.; Edwards, A.; Arrowsmith, C.; Tong, L., Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643. J. Biol. Chem. 2003, 278 (10), 8804-8808. https://doi.org/10.1074/jbc.M211892200

212Yee, A.; Pardee, K.; Christendat, D.; Savchenko, A.; Edwards, A. M.; Arrowsmith, C. H., Structural proteomics: Toward high-throughput structural biology as a tool in functional genomics. Acc. Chem. Res. 2003, 36 (3), 183-189. https://doi.org/10.1021/ar010126g

213Zhang, R. G.; Andersson, C. E.; Savchenko, A.; Skarina, T.; Evdokimova, E.; Beasley, S.; Arrowsmith, C. H.; Edwards, A. M.; Joachimiak, A.; Mowbray, S. L., Structure of Escherichia coli ribose-5-phosphate isomerase: A ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle. Structure 2003, 11 (1), 31-42. https://doi.org/10.1016/S0969-2126(02)00933-4

214Zhang, R. G.; Andersson, C. E.; Skarina, T.; Evdokimova, E.; Edwards, A. M.; Joachimiak, A.; Savchenko, A.; Mowbray, S. L., The 2.2 Å resolution structure of RpiB/AlsB from Escherichia coli illustrates a new approach to the ribose-5-phosphate isomerase reaction. J. Mol. Biol. 2003, 332 (5), 1083-1094. https://doi.org/10.1016/j.jmb.2003.08.009

215Zhang, R. G.; Duke, N.; Laskowski, R.; Evdokimova, E.; Skarina, T.; Edwards, A.; Joachimiak, A.; Savchenko, A., Conserved protein YecM from Escherichia coli shows structural homology to metal-binding isomerases and oxygenases. Proteins: Structure, Function and Genetics 2003, 51 (2), 311-314. https://doi.org/10.1002/prot.10307

216Bray, J. E.; Marsden, R. L.; Rison, S. C. G.; Savchenko, A.; Edwards, A. M.; Thornton, J. M.; Orengo, C. A., A practical and robust sequence search strategy for structural genomics target selection. Bioinformatics 2004, 20 (14), 2288-2295. https://doi.org/10.1093/bioinformatics/bth240

217Chen, S.; Yakunin, A. F.; Kuznetsova, E.; Busso, D.; Pufan, R.; Proudfoot, M.; Kim, R.; Kim, S. H., Structural and functional characterization of a novel phosphodiesterase from Methanococcus jannaschii. J. Biol. Chem. 2004, 279 (30), 31854-31862. https://doi.org/10.1074/jbc.M401059200

218Dinglasan, M. J. A.; Ye, Y.; Edwards, E. A.; Mabury, S. A., Fluorotelomer alcohol biodegradation yields poly- and perfluorinated acids. Environ. Sci. Technol. 2004, 38 (10), 2857-2864.

219Duhamel, M.; Mo, K.; Edwards, E. A., Characterization of a highly enriched Dehalococcoides-containing culture that grows on vinyl chloride and trichloroethene. Applied and Environmental Microbiology 2004, 70 (9), 5538-5545. https://doi.org/10.1128/AEM.70.9.5538-5545.2004

220Edwards, E. A.; O'Toole, M.; Wallis, C., Sending children home on tracheostomy dependent ventilation: Pitfalls and outcomes. Arch. Dis. Child. 2004, 89 (3), 251-255. https://doi.org/10.1136/adc.2003.028316

221Hirschorn, S. K.; Dinglasan, M. J.; Elsner, M.; Mancini, S. A.; Lacrampe-Couloume, G.; Edwards, E. A.; Lollar, B. S., Pathway dependent isotopic fractionation during aerobic biodegradation of 1,2-dichloroethane. Environ. Sci. Technol. 2004, 38 (18), 4775-4781. https://doi.org/10.1021/es049920y

222Kim, Y.; Yakunin, A. F.; Kuznetsova, E.; Xu, X.; Pennycooke, M.; Gu, J.; Cheung, F.; Proudfoot, M.; Arrowsmith, C. H.; Joachimiak, A.; Edwards, A. M.; Christendat, D., Structure- and function-based characterization of a new phosphoglycolate phosphatase from Thermoplasma acidophilum. J. Biol. Chem. 2004, 279 (1), 517-526. https://doi.org/10.1074/jbc.M306054200

223Koh, L. H.; Kuhn, D. C. S.; Mohseni, M.; Allen, D. G., Utilizing ultraviolet photooxidation as a pre-treatment of volatile organic compounds upstream of a biological gas cleaning operation. Journal of Chemical Technology and Biotechnology 2004, 79 (6), 619-625. https://doi.org/10.1002/jctb.1030

224Li, X.; Yakunin, A. F.; McKay, M. L., Fe-responsive accumulation of redox proteins ferredoxin and flavodoxin in a marine cryptomonad. Eur. J. Phycol. 2004, 39 (1), 73-82. https://doi.org/10.1080/09670260310001637306

225Master, E. R.; Rudsander, U. J.; Zhou, W.; Henriksson, H.; Divne, C.; Denman, S.; Wilson, D. B.; Teeri, T. T., Recombinant expression and enzymatic characterization of PttCe19A, a KOR homologue from Populus tremula x tremuloides. Biochemistry 2004, 43 (31), 10080-10089. https://doi.org/10.1021/bi049453x

226Miller, M. J.; Allen, D. G., Transport of hydrophobic pollutants through biofilms in biofilters. Chem. Eng. Sci. 2004, 59 (17), 3515-3525. https://doi.org/10.1016/j.ces.2004.05.011

227Oshinowo, T.; Diosady, L.; Yusufali, R.; Laleye, L., Stability of salt double-fortified with ferrous fumarate and potassium iodate or iodide under storage and distribution conditions in Kenya. Food Nutr. Bull. 2004, 25 (3), 264-270.

228Proudfoot, M.; Kuznetsova, E.; Brown, G.; Rao, N. N.; Kitagawa, M.; Mori, H.; Savchenko, A.; Yakunin, A. F., General enzymatic screens identify three new nucleotidases in Escherichia coli: Biochemical characterization of SurE, YfbR, and YjjG. J. Biol. Chem. 2004, 279 (52), 54687-54694. https://doi.org/10.1074/jbc.M411023200

229Sanishvili, R.; Beasley, S.; Skarina, T.; Glesne, D.; Joachimiak, A.; Edwards, A.; Savchenko, A., The crystal structure of Escherichia coli MoaB suggests a probable role in molybdenum cofactor synthesis. J. Biol. Chem. 2004, 279 (40), 42139-42146. https://doi.org/10.1074/jbc.M407694200

230Saridakis, V.; Yakunin, A.; Xu, X.; Anandakumar, P.; Pennycooke, M.; Gu, J.; Cheung, F.; Lew, J. M.; Sanishvili, R.; Joachimiak, A.; Arrowsmith, C. H.; Christendat, D.; Edwards, A. M., The structural basis for methylmalonic aciduria: The crystal structure of archaeal ATP:cobalamin adenosyltransferase. J. Biol. Chem. 2004, 279 (22), 23646-23653. https://doi.org/10.1074/jbc.M401395200

231Savchenko, A.; Skarina, T.; Evdokimova, E.; Watson, J. D.; Laskowski, R.; Arrowsmith, C. H.; Edwards, A. M.; Joachimiak, A.; Zhang, R. G., X-Ray crystal structure of CutA from Thermotoga maritima at 1.4 Å Resolution. Proteins: Structure, Function and Genetics 2004, 54 (1), 162-165. https://doi.org/10.1002/prot.10585

232Saville, B. A.; Khavkine, M.; Seetharam, G.; Marandi, B.; Zuo, Y. L., Characterization and performance of immobilized amylase and cellulase. Applied Biochemistry and Biotechnology - Part A Enzyme Engineering and Biotechnology 2004, 113 (1-3), 251-259. https://doi.org/10.1385/ABAB:113:1-3:251

233Waller, A. S.; Cox, E. E.; Edwards, E. A., Perchlorate-reducing microorganisms isolated from contaminated sites. Environ. Microbiol. 2004, 6 (5), 517-527. https://doi.org/10.1111/j.1462-2920.2004.00598.x

234Wang, D. Y.; Fulthorpe, R.; Liss, S. N.; Edwards, E. A., Identification of estrogen-responsive genes by complementary deoxyribonucleic acid microarray and characterization of a novel early estrogen-induced gene: EEIG1. Mol. Endocrinol. 2004, 18 (2), 402-411. https://doi.org/10.1210/me.2003-0202

235Wang, D. Y.; McKague, B.; Liss, S. N.; Edwards, E. A., Gene expression profiles for detecting and distinguishing potential endocrine-disrupting compounds in environmental samples. Environ. Sci. Technol. 2004, 38 (23), 6396-6406. https://doi.org/10.1021/es049235r

236Wiback, S. J.; Mahadevan, R.; Palsson, B. Ø., Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: The Escherichia coli spectrum. Biotechnology and Bioengineering 2004, 86 (3), 317-331. https://doi.org/10.1002/bit.20011

237Yakunin, A. F.; Proudfoot, M.; Kuznetsova, E.; Savchenko, A.; Brown, G.; Arrowsmith, C. H.; Edwards, A. M., The HD domain of the Escherichia coli tRNA nucleotidyltransferase has 2′,3′-cyclic phosphodiesterase, 2′-nucleotidase, and phosphatase activities. J. Biol. Chem. 2004, 279 (35), 36819-36827. https://doi.org/10.1074/jbc.M405120200

238Yakunin, A. F.; Yee, A. A.; Savchenko, A.; Edwards, A. M.; Arrowsmith, C. H., Structural proteomics: A tool for genome annotation. Curr. Opin. Chem. Biol. 2004, 8 (1), 42-48. https://doi.org/10.1016/j.cbpa.2003.12.003

239Aspeborg, H.; Schrader, J.; Coutinho, P. M.; Stam, M.; Kallas, Å.; Djerbi, S.; Nilsson, P.; Denman, S.; Amini, B.; Sterky, F.; Master, E.; Sandberg, G.; Mellerowicz, E.; Sundberg, B.; Henrissat, B.; Teeri, T. T., Carbohydrate-active enzymes involved in the secondary cell wall biogenesis in hybrid aspen. Plant Physiol. 2005, 137 (3), 983-997. https://doi.org/10.1104/pp.104.055087

240Chartrand, M. M. G.; Waller, A.; Mattes, T. E.; Elsner, M.; Lacrampe-Couloume, G.; Gossett, J. M.; Edwards, E. A.; Lollar, B. S., Carbon isotopic fractionation during aerobic vinyl chloride degradation. Environ. Sci. Technol. 2005, 39 (4), 1064-1070. https://doi.org/10.1021/es0492945

241Chen, S.; Yakunin, A. F.; Proudfoot, M.; Kim, R.; Kim, S. H., Structural and functional characterization of a 5,10- methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087). Proteins: Structure, Function and Genetics 2005, 61 (2), 433-443. https://doi.org/10.1002/prot.20591

242Cuff, M. E.; Miller, D. J.; Korolev, S.; Xu, X.; Anderson, W. F.; Edwards, A.; Joachimiak, A.; Savchenko, A., Crystal structure of a predicted precorrin-8x methylmutase from Thermoplasma acidophilum. Proteins: Structure, Function and Genetics 2005, 58 (3), 751-754. https://doi.org/10.1002/prot.20022

243Datta, I.; Allen, D. G., Biofilter Technology. In Biotechnology for Odor and Air Pollution Control, Shareefdeen, Z.; Singh, A., Eds. Springer Berlin Heidelberg: Berlin, Heidelberg, 2005; pp 125-145. https://doi.org/10.1007/3-540-27007-8_6

244Dirk-Faitakis, C.; Allen, D. G., Development and simulation studies of an unsteady state biofilter model for the treatment of cyclic air emissions of an α-pinene gas stream. Journal of Chemical Technology and Biotechnology 2005, 80 (7), 737-745. https://doi.org/10.1002/jctb.1200

245Dobrovetsky, E.; Ming, L. L.; Andorn-Broza, R.; Khutoreskaya, G.; Bray, J. E.; Savchenko, A.; Arrowsmith, C. H.; Edwards, A. M.; Koth, C. M., High-throughput production of prokaryotic membrane proteins. Journal of Structural and Functional Genomics 2005, 6 (1), 33-50. https://doi.org/10.1007/s10969-005-1363-5

246Famili, I.; Mahadevan, R.; Palsson, B. O., k-Cone analysis: Determining all candidate values for kinetic parameters on a network scale. Biophys. J. 2005, 88 (3), 1616-1625. https://doi.org/10.1529/biophysj.104.050385

247Gadkar, K. G.; Doyle Iii, F. J.; Edwards, J. S.; Mahadevan, R., Estimating optimal profiles of genetic alterations using constraint-based models. Biotechnology and Bioengineering 2005, 89 (2), 243-251. https://doi.org/10.1002/bit.20349

248Ghodsvali, A.; Khodaparast, M. H. H.; Vosoughi, M.; Diosady, L. L., Preparation of canola protein materials using membrane technology and evaluation of meals functional properties. Food Res. Int. 2005, 38 (2), 223-231. https://doi.org/10.1016/j.foodres.2004.10.007

249Kuznetsova, E.; Proudfoot, M.; Sanders, S. A.; Reinking, J.; Savchenko, A.; Arrowsmith, C. H.; Edwards, A. M.; Yakunin, A. F., Enzyme genomics: Application of general enzymatic screens to discover new enzymes. FEMS Microbiol. Rev. 2005, 29 (2), 263-279. https://doi.org/10.1016/j.femsre.2004.12.006

250Mahadevan, R.; Burgard, A. P.; Famili, I.; Van Dien, S.; Schilling, C. H., Applications of metabolic modeling to drive bioprocess development for the production of value-added chemicals. Biotechnology and Bioprocess Engineering 2005, 10 (5), 408-417.

251Mahadevan, R.; Palsson, B. O., Properties of metabolic networks: Structure versus function. Biophys. J. 2005, 88 (1), L07-L09. https://doi.org/10.1529/biophysj.104.055723

252Master, E. R.; McKinlay, J. J.; Stewart, G. R.; Mohn, W. W., Biphenyl uptake by psychrotolerant Pseudomonas sp. strain Cam-1 and mesophilic Burkholderia sp. strain LB400. Can. J. Microbiol. 2005, 51 (5), 399-404. https://doi.org/10.1139/w05-013

253Miller, M. J.; Allen, D. G., Biodegradation of α-pinene in model biofilms in biofilters. Environ. Sci. Technol. 2005, 39 (15), 5856-5863. https://doi.org/10.1021/es048254y

254Miller, M. J.; Allen, D. G., Modelling transport and degradation of hydrophobic pollutants in biofilter biofilms. Chem. Eng. J. 2005, 113 (2-3), 197-204. https://doi.org/10.1016/j.cej.2005.03.008

255Mohseni, M.; Koh, L. H.; Kuhn, D. C. S.; Allen, D. G., Ultraviolet photooxidation for the biodegradability enhancement of airborne o-xylene. J. Environ. Eng. Sci. 2005, 4 (4), 279-286. https://doi.org/10.1139/s04-060

256Morgan-Sagastume, F.; Allen, D. G., Activated sludge deflocculation under temperature upshifts from 30 to 45°C. Water Res. 2005, 39 (6), 1061-1074. https://doi.org/10.1016/j.watres.2004.12.027

257Morgan-Sagastume, F.; Allen, D. G., Physicochemical properties and stability of activated sludge flocs under temperature upshifts from 30 to 45°C. Journal of Colloid and Interface Science 2005, 281 (1), 136-145. https://doi.org/10.1016/j.jcis.2004.08.026

258Morrill, P. L.; Lacrampe-Couloume, G.; Slater, G. F.; Sleep, B. E.; Edwards, E. A.; McMaster, M. L.; Major, D. W.; Lollar, B. S., Quantifying chlorinated ethene degradation during reductive dechlorination at Kelly AFB using stable carbon isotopes. J. Contam. Hydrol. 2005, 76 (3-4), 279-293. https://doi.org/10.1016/j.jconhyd.2004.11.002

259Qian, S. X.; Jancarik, J.; Lou, Y.; Kuznetsova, K.; Yakunin, A. F.; Yokota, H.; Adams, P.; Kim, R.; Kim, S. H., Crystal structures of a phosphotransacetylase from Bacillus subtilis and its complex with acetyl phosphate. Journal of Structural and Functional Genomics 2005, 6 (4), 269-279. https://doi.org/10.1007/s10969-005-9001-9

260Sanders, D. A. R.; Walker, J. R.; Skarina, T.; Savchenko, A., The X-ray crystal structure of PA3566 from Pseudomonas aureginosa at 1.8 Å resolution. Proteins: Structure, Function and Genetics 2005, 61 (1), 209-212. https://doi.org/10.1002/prot.20503

261Savchenko, A.; Krogatt, N.; Cort, J. R.; Evdokimova, E.; Lew, J. M.; Yee, A. A.; Sánchez-Pulido, L.; Andrade, M. A.; Bochkarev, A.; Watson, J. D.; Kennedy, M. A.; Greenblatt, J.; Hughes, T.; Arrowsmith, C. H.; Rommens, J. M.; Edwards, A. M., The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism. J. Biol. Chem. 2005, 280 (19), 19213-19220. https://doi.org/10.1074/jbc.M414421200

262Scott, H. E.; Liss, S. N.; Farnood, R. R.; Allen, D. G., Ultraviolet disinfection of sequencing batch reactor effluent: A study of physicochemical properties of microbial floc and disinfection performance. J. Environ. Eng. Sci. 2005, 4 (SUPPL. 1), S65-S74. https://doi.org/10.1139/s04-076

263Sosnik, A.; Leung, B.; McGuigan, A. P.; Sefton, M. V., Collagen/poloxamine hydrogels: Cytocompatibility of embedded HepG2 cells and surface-attached endothelial cells. Tissue Eng. 2005, 11 (11-12), 1807-1816. https://doi.org/10.1089/ten.2005.11.1807

264Sun, W.; Xu, X.; Pavlova, M.; Edwards, A. M.; Joachimiak, A.; Savchenko, A.; Christendat, D., The crystal structure of a novel SAM-dependent methyltransferase PH1915 from Pyrococcus horikoshii. Protein Sci. 2005, 14 (12), 3121-3128. https://doi.org/10.1110/ps.051821805

265Ulrich, A. C.; Beller, H. R.; Edwards, E. A., Metabolites detected during biodegradation of 13C 6-benzene in nitrate-reducing and methanogenic enrichment cultures. Environ. Sci. Technol. 2005, 39 (17), 6681-6691. https://doi.org/10.1021/es050294u

266Waller, A. S.; Krajmalnik-Brown, R.; Löffler, F. E.; Edwards, E. A., Multiple reductive-dehalogenase-homologous genes are simultaneously transcribed during dechlorination by Dehalococcoides-containing cultures. Applied and Environmental Microbiology 2005, 71 (12), 8257-8264. https://doi.org/10.1128/AEM.71.12.8257-8264.2005

267Yang, H.; Allen, D. G., Potential improvement in biofilter design through the use of heterogeneous packing and a conical biofilter geometry. J. Environ. Eng. 2005, 131 (4), 504-511. https://doi.org/10.1061/(ASCE)0733-9372(2005)131:4(504)

268Yee, A. A.; Savchenko, A.; Ignachenko, A.; Lukin, J.; Xu, X.; Skarina, T.; Evdokimova, E.; Liu, C. S.; Semesi, A.; Guido, V.; Edwards, A. M.; Arrowsmith, C. H., NMR and X-ray crystallography, complementary tools in structural proteomics of small proteins. Journal of the American Chemical Society 2005, 127 (47), 16512-16517. https://doi.org/10.1021/ja053565+

269Zuo, Y.; Saville, B. A., Efficacy of immobilized cellulase for deinking of mixed office waste. J. Pulp Pap. Sci. 2005, 31 (1), 3-6.

270Allen, D. G.; Miller, M. J., Response to Comment on Biodegradation of α-pinene in model biofilms in biofilters. Environ. Sci. Technol. 2006, 40 (7), 2494. https://doi.org/10.1021/es060135q

271Dinglasan-Panlilio, M. J.; Dworatzek, S.; Mabury, S.; Edwards, E., Microbial oxidation of 1,2-dichloroethane under anoxic conditions with nitrate as electron acceptor in mixed and pure cultures. FEMS Microbiol. Ecol. 2006, 56 (3), 355-364. https://doi.org/10.1111/j.1574-6941.2006.00077.x

272Diosady, L.; Yusufali, R.; Oshinowo, T.; Laleye, L., A study of storage and distribution of double fortified salts in Kenya. J. Food Eng. 2006, 76 (4), 547-556. https://doi.org/10.1016/j.jfoodeng.2005.05.057

273Duhamel, M.; Edwards, E. A., Microbial composition of chlorinated ethene-degrading cultures dominated by Dehalococcoides. FEMS Microbiol. Ecol. 2006, 58 (3), 538-549. https://doi.org/10.1111/j.1574-6941.2006.00191.x

274Gadkar, K. G.; Mahadevan, R.; Doyle Iii, F. J., Optimal genetic manipulations in batch bioreactor control. Automatica 2006, 42 (10), 1723-1733. https://doi.org/10.1016/j.automatica.2006.05.004

275Geisler-Lee, J.; Geisler, M.; Coutinho, P. M.; Segerman, B.; Nishikubo, N.; Takahashi, J.; Aspeborg, H.; Djerbi, S.; Master, E.; Andersson-Gunnerås, S.; Sundberg, B.; Karpinski, S.; Teeri, T. T.; Kleczkowski, L. A.; Henrissat, B.; Mellerowicz, E. J., Poplar carbohydrate-active enzymes. Gene identification and expression analyses. Plant Physiol. 2006, 140 (3), 946-962. https://doi.org/10.1104/pp.105.072652

276Gonzalez, C. F.; Proudfoot, M.; Brown, G.; Korniyenko, Y.; Mori, H.; Savchenko, A. V.; Yakunin, A. F., Molecular basis of formaldehyde detoxification: Characterization of two S-formylglutathione hydrolases from Escherichia coli, FrmB and YeiG. J. Biol. Chem. 2006, 281 (20), 14514-14522. https://doi.org/10.1074/jbc.M600996200

277Gorelik, M.; Lunin, V. V.; Skarina, T.; Savchenko, A., Structural characterization of GntR/HutC family signaling domain. Protein Sci. 2006, 15 (6), 1506-1511. https://doi.org/10.1110/ps.062146906

278Grostern, A.; Edwards, E. A., A 1,1,1-trichloroethane-degrading anaerobic mixed microbial culture enhances biotransformation of mixtures of chlorinated ethenes and ethanes. Applied and Environmental Microbiology 2006, 72 (12), 7849-7856. https://doi.org/10.1128/AEM.01269-06

279Grostern, A.; Edwards, E. A., Growth of Dehalobacter and Dehalococcoides spp. during degradation of chlorinated ethanes. Applied and Environmental Microbiology 2006, 72 (1), 428-436. https://doi.org/10.1128/AEM.72.1.428-436.2006

280Kuznetsova, E.; Proudfoot, M.; Gonzalez, C. F.; Brown, G.; Omelchenko, M. V.; Borozan, I.; Carmel, L.; Wolf, Y. I.; Mori, H.; Savchenko, A. V.; Arrowsmith, C. H.; Koonin, E. V.; Edwards, A. M.; Yakunin, A. F., Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family. J. Biol. Chem. 2006, 281 (47), 36149-36161. https://doi.org/10.1074/jbc.M605449200

281Liu, J. R.; Liu, C. T.; Edwards, E. A.; Liss, S. N., Effect of phosphorus limitation on microbial floc structure and gene expression in activated sludge. Water Sci. Technol. 2006, 54 (1), 247-255. https://doi.org/10.2166/wst.2006.393

282Löffler, F. E.; Edwards, E. A., Harnessing microbial activities for environmental cleanup. Curr. Opin. Biotechnol. 2006, 17 (3), 274-284. https://doi.org/10.1016/j.copbio.2006.05.001

283Mahadevan, R.; Bond, D. R.; Butler, J. E.; Esteve-Nuñez, A.; Coppi, M. V.; Palsson, B. O.; Schilling, C. H.; Lovley, D. R., Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling. Applied and Environmental Microbiology 2006, 72 (2), 1558-1568. https://doi.org/10.1128/AEM.72.2.1558-1568.2006

284Mancini, S. A.; Hirschorn, S. K.; Elsner, M.; Lacrampe-Couloume, G.; Sleep, B. E.; Edwards, E. A.; Lollar, B. S., Effects of trace element concentration on enzyme controlled stable isotope fractionation during aerobic biodegradation of toluene. Environ. Sci. Technol. 2006, 40 (24), 7675-7681. https://doi.org/10.1021/es061363n

285Marnoch, R.; Diosady, L. L., Production of mustard protein isolates from oriental mustard seed (Brassica juncea L.). J. Am. Oil Chem. Soc. 2006, 83 (1), 65-69. https://doi.org/https://doi.org/10.1007/s11746-006-1177-z

286McGuigan, A. P.; Sefton, M. V., Vascularized organoid engineered by modular assembly enables blood perfusion. Proceedings of the National Academy of Sciences of the United States of America 2006, 103 (31), 11461-11466. https://doi.org/10.1073/pnas.0602740103

287Morrill, P. L.; Sleep, B. E.; Slater, G. F.; Edwards, E. A.; Lollar, B. S., Evaluation of isotopic enrichment factors for the biodegradation of chlorinated ethenes using a parameter estimation model: Toward an improved quantification of biodegradation. Environ. Sci. Technol. 2006, 40 (12), 3886-3892. https://doi.org/10.1021/es051513e

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366Currie, M. A.; Merino, F.; Skarina, T.; Wong, A. H. Y.; Singer, A.; Brown, G.; Savchenko, A.; Caniuguir, A.; Guixé, V.; Yakunin, A. F.; Jia, Z., ADP-dependent 6-phosphofructokinase from Pyrococcus horikoshii OT3. Structure determination and biochemical characterization of PH1645. J. Biol. Chem. 2009, 284 (34), 22664-22671. https://doi.org/10.1074/jbc.M109.012401

367Grostern, A.; Chan, W. W. M.; Edwards, E. A., 1,1,1-Trichloroethane and 1,1-dichloroethane reductive dechlorination kinetics and co-contaminant effects in a Dehalobacter-containing mixed culture. Environ. Sci. Technol. 2009, 43 (17), 6799-6807. https://doi.org/10.1021/es901038x

368Grostern, A.; Edwards, E. A., Characterization of a Dehalobacter coculture that dechlorinates 1,2-dichloroethane to ethene and identification of the putative reductive dehalogenase gene. Applied and Environmental Microbiology 2009, 75 (9), 2684-2693. https://doi.org/10.1128/AEM.02037-08

369Kang, Y.; Lunin, V. V.; Skarina, T.; Savchenko, A.; Schurr, M. J.; Hoang, T. T., The long-chain fatty acid sensor, PsrA, modulates the expression of rpoS and the type III secretion exsCEBA operon in Pseudomonas aeruginosa. Mol. Microbiol. 2009, 73 (1), 120-136. https://doi.org/10.1111/j.1365-2958.2009.06757.x

370Li, Y. O.; Diosady, L. L.; Wesley, A. S., Iron in vitro bioavailability and iodine storage stability in double-fortified salt. Food Nutr. Bull. 2009, 30 (4), 327-335.

371Li, Y. O.; Lam, J.; Diosady, L. L.; Jankowski, S., Antioxidant system for the preservation of vitamin A in ultra rice. Food Nutr. Bull. 2009, 30 (1), 82-89.

372Martinez, D.; Challacombe, J.; Morgenstern, I.; Hibbett, D.; Schmoll, M.; Kubicek, C. P.; Ferreira, P.; Ruiz-Duenas, F. J.; Martinez, A. T.; Kersten, P.; Hammel, K. E.; Vanden Wymelenberg, A.; Gaskell, J.; Lindquist, E.; Sabat, G.; BonDurant, S. S.; Larrondo, L. F.; Canessa, P.; Vicuna, R.; Yadav, J.; Doddapaneni, H.; Subramanian, V.; Pisabarro, A. G.; Lavín, J. L.; Oguiza, J. A.; Master, E.; Henrissat, B.; Coutinho, P. M.; Harris, P.; Magnuson, J. K.; Baker, S. E.; Bruno, K.; Kenealy, W.; Hoegger, P. J.; Kües, U.; Ramaiya, P.; Lucas, S.; Salamov, A.; Shapiro, H.; Tu, H.; Chee, C. L.; Misra, M.; Xie, G.; Teter, S.; Yaver, D.; James, T.; Mokrejs, M.; Pospisek, M.; Grigoriev, I. V.; Brettin, T.; Rokhsar, D.; Berka, R.; Cullen, D., Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proceedings of the National Academy of Sciences of the United States of America 2009, 106 (6), 1954-1959. https://doi.org/10.1073/pnas.0809575106

373Morrill, P. L.; Sleep, B. E.; Seepersad, D. J.; McMaster, M. L.; Hood, E. D.; LeBron, C.; Major, D. W.; Edwards, E. A.; Sherwood Lollar, B., Variations in expression of carbon isotope fractionation of chlorinated ethenes during biologically enhanced PCE dissolution close to a source zone. J. Contam. Hydrol. 2009, 110 (1-2), 60-71. https://doi.org/10.1016/j.jconhyd.2009.08.006

374Najafian, L.; Ghodsvali, A.; Haddad Khodaparast, M. H.; Diosady, L. L., Aqueous extraction of virgin olive oil using industrial enzymes. Food Res. Int. 2009, 42 (1), 171-175. https://doi.org/10.1016/j.foodres.2008.10.002

375Podzelinska, K.; He, S. M.; Wathier, M.; Yakunin, A.; Proudfoot, M.; Hove-Jensen, B.; Zechel, D. L.; Jia, Z., Structure of PhnP, a phosphodiesterase of the carbon-phosphorus lyase pathway for phosphonate degradation. J. Biol. Chem. 2009, 284 (25), 17216-17226. https://doi.org/10.1074/jbc.M808392200

376Powlowski, J.; Mahajan, S.; Schapira, M.; Master, E. R., Substrate recognition and hydrolysis by a fungal xyloglucan-specific family 12 hydrolase. Carbohydr. Res. 2009, 344 (10), 1175-1179. https://doi.org/10.1016/j.carres.2009.04.020

377Risso, C.; Sun, J.; Zhuang, K.; Mahadevan, R.; DeBoy, R.; Ismail, W.; Shrivastava, S.; Huot, H.; Kothari, S.; Daugherty, S.; Bui, O.; Schilling, C. H.; Lovley, D. R.; Methé, B. A., Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens. BMC Genomics 2009, 10, 447. https://doi.org/10.1186/1471-2164-10-447

378Scheibe, T. D.; Mahadevan, R.; Fang, Y.; Garg, S.; Long, P. E.; Lovley, D. R., Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation. Microb. Biotechnol. 2009, 2 (2 SPEC. ISS.), 274-286. https://doi.org/10.1111/j.1751-7915.2009.00087.x

379Sun, J.; Sayyar, B.; Butler, J. E.; Pharkya, P.; Fahland, T. R.; Famili, I.; Schilling, C. H.; Lovley, D. R.; Mahadevan, R., Genome-scale constraint-based modeling of Geobacter metallireducens. BMC Syst. Biol. 2009, 3, 15. https://doi.org/10.1186/1752-0509-3-15

380Takahashi, J.; Rudsander, U. J.; Hedenstrm, M.; Banasiak, A.; Harholt, J.; Amelot, N.; Immerzeel, P.; Ryden, P.; Endo, S.; Ibatullin, F. M.; Brumer, H.; Del Campillo, E.; Master, E. R.; Vibe Scheller, H.; Sundberg, B.; Teeri, T. T.; Mellerowicz, E. J., KORRIGAN1 and its aspen homolog PttCel9A1 decrease cellulose crystallinity in Arabidopsis stems. Plant Cell Physiol. 2009, 50 (6), 1099-1115. https://doi.org/10.1093/pcp/pcp062

381Van Straaten, K. E.; Gonzalez, C. F.; Valladares, R. B.; Xu, X.; Savchenko, A. V.; Sanders, D. A. R., The structure of a putative S-formylglutathione hydrolase from Agrobacterium tumefaciens. Protein Sci. 2009, 18 (10), 2196-2202. https://doi.org/10.1002/pro.216

382Vorobiev, S. M.; Su, M.; Seetharaman, J.; Huang, Y. J.; Chen, C. X.; Maglaqui, M.; Janjua, H.; Proudfoot, M.; Yakunin, A.; Xiao, R.; Acton, T. B.; Montelione, G. T.; Tong, L., Crystal structure of human retinoblastoma binding protein 9. Proteins: Structure, Function and Bioinformatics 2009, 74 (2), 526-529. https://doi.org/10.1002/prot.22278

383Wang, S.; Kirillova, O.; Chruszcz, M.; Gront, D.; Zimmerman, M. D.; Cymborowski, M. T.; Shumilin, I. A.; Skarina, T.; Gorodichtchenskaia, E.; Savchenko, A.; Edwards, A. M.; Minor, W., The crystal structure of the AF2331 protein from Archaeoglobus fulgidus DSM 4304 forms an unusual interdigitated dimer with a new type of α + β fold. Protein Sci. 2009, 18 (11), 2410-2419. https://doi.org/10.1002/pro.251

384Wood, N.; Tran, H.; Master, E., Pretreatment of pulp mill secondary sludge for high-rate anaerobic conversion to biogas. Bioresour. Technol. 2009, 100 (23), 5729-5735. https://doi.org/10.1016/j.biortech.2009.06.062

385Zaheer, R.; Morton, R.; Proudfoot, M.; Yakunin, A.; Finan, T. M., Genetic and biochemical properties of an alkaline phosphatase PhoX family protein found in many bacteria. Environ. Microbiol. 2009, 11 (6), 1572-1587. https://doi.org/10.1111/j.1462-2920.2009.01885.x

386Zhu, I. X.; Allen, D. G.; Liss, S. N., Effect of oxygen partial pressure and chemical oxygen demand loading on the biofilm properties in membrane-aerated bioreactors. Water Environment Research 2009, 81 (3), 289-297. https://doi.org/10.2175/106143008X325647

387Ahsanul Islam, M.; Edwards, E. A.; Mahadevan, R., Characterizing the Metabolism of Dehalococcoides with a Constraint-Based Model. PLOS Computational Biology 2010, 6 (8), e1000887. https://doi.org/10.1371/journal.pcbi.1000887

388Becerra, F. Y. G.; Allen, D. G.; Acosta, E. J., Surfactant-like properties of alkaline extracts from wastewater biosolids. Journal of Surfactants and Detergents 2010, 13 (3), 261-271. https://doi.org/10.1007/s11743-009-1164-0

389Bonert, M.; Saville, B. A., A non-dimensional analysis of hemodialysis. Open Biomed. Eng. J. 2010, 4, 138-155. https://doi.org/10.2174/1874120701004010138

390Chan, W. Y.; Wong, M.; Guthrie, J.; Savchenko, A. V.; Yakunin, A. F.; Pai, E. F.; Edwards, E. A., Sequence- and activity-based screening of microbial genomes for novel dehalogenases. Microb. Biotechnol. 2010, 3 (1), 107-120. https://doi.org/10.1111/j.1751-7915.2009.00155.x

391Duhamel, M.; Grostern, A.; Dworatzek, S.; Edwards, E. A., Chloroform respiration to dichloromethane by a Dehalobacter population. Environ. Microbiol. 2010, 12 (4), 1053-1060. https://doi.org/10.1111/j.1462-2920.2009.02150.x

392García Becerra, F. Y.; Acosta, E. J.; Allen, D. G., Alkaline extraction of wastewater activated sludge biosolids. Bioresour. Technol. 2010, 101 (18), 6983-91. https://doi.org/10.1016/j.biortech.2010.04.021

393García-Becerra, F. Y.; Allen, D. G.; Acosta, E. J., Surfactants from Waste Biomass. In Surfactants from Renewable Resources, 2010; pp 167-189. https://doi.org/https://doi.org/10.1002/9780470686607.ch9

394Garg, S.; Yang, L.; Mahadevan, R., Thermodynamic analysis of regulation in metabolic networks using constraint-based modeling. BMC Res. Notes 2010, 3, 125. https://doi.org/10.1186/1756-0500-3-125

395Hayes, A. C.; Liss, S. N.; Allen, D. G., Growth kinetics of Hyphomicrobium and Thiobacillus spp. in mixed cultures degrading dimethyl sulfide and methanol. Applied and Environmental Microbiology 2010, 76 (16), 5423-5431. https://doi.org/10.1128/AEM.00076-10

396Hayes, A. C.; Zhang, Y.; Liss, S. N.; Allen, D. G., Linking performance to microbiology in biofilters treating dimethyl sulphide in the presence and absence of methanol. Applied Microbiology and Biotechnology 2010, 85 (4), 1151-1166. https://doi.org/10.1007/s00253-009-2272-5

397Hulme, S. E.; Shevkoplyas, S. S.; McGuigan, A. P.; Apfeld, J.; Fontana, W.; Whitesides, G. M., Lifespan-on-a-chip: Microfluidic chambers for performing lifelong observation of C. elegans. Lab on a Chip - Miniaturisation for Chemistry and Biology 2010, 10 (5), 589-597. https://doi.org/10.1039/b919265d

398Kuznetsova, E.; Xu, L.; Singer, A.; Brown, G.; Dong, A.; Flick, R.; Cui, H.; Cuff, M.; Joachimiak, A.; Savchenko, A.; Yakunin, A. F., Structure and activity of the metal-independent fructose-1,6-bisphosphatase YK23 from Saccharomyces cerevisiae. J. Biol. Chem. 2010, 285 (27), 21049-21059. https://doi.org/10.1074/jbc.M110.118315

399Li, Y. O.; Diosady, L. L.; Wesley, A. S., Iodine stability in iodized salt dual fortified with microencapsulated ferrous fumarate made by an extrusion-based encapsulation process. J. Food Eng. 2010, 99 (2), 232-238. https://doi.org/10.1016/j.jfoodeng.2010.03.007

400Lollar, B. S.; Hirschorn, S.; Mundle, S. O. C.; Grostern, A.; Edwards, E. A.; Lacrampe-Couloume, G., Insights into enzyme kinetics of chloroethane biodegradation using compound specific stable isotopes. Environ. Sci. Technol. 2010, 44 (19), 7498-7503. https://doi.org/10.1021/es101330r

401Lorenzini, E.; Singer, A.; Singh, B.; Lam, R.; Skarina, T.; Chirgadze, N. Y.; Savchenko, A.; Gupta, R. S., Structure and protein-protein interaction studies on Chlamydia trachomatis protein CT670 (YscO homolog). J. Bacteriol. 2010, 192 (11), 2746-2756. https://doi.org/10.1128/JB.01479-09

402Luo, H. B.; Zheng, H.; Zimmerman, M. D.; Chruszcz, M.; Skarina, T.; Egorova, O.; Savchenko, A.; Edwards, A. M.; Minor, W., Crystal structure and molecular modeling study of N-carbamoylsarcosine amidase Ta0454 from Thermoplasma acidophilum. J. Struct. Biol. 2010, 169 (3), 304-311. https://doi.org/10.1016/j.jsb.2009.11.008

403Mahajan, S.; Master, E. R., Proteomic characterization of lignocellulose-degrading enzymes secreted by Phanerochaete carnosa grown on spruce and microcrystalline cellulose. Applied Microbiology and Biotechnology 2010, 86 (6), 1903-1914. https://doi.org/10.1007/s00253-010-2516-4

404Nadarajah, N.; Allen, D. G.; Fulthorpe, R. R., Composition of activated sludge settling and planktonic bacterial communities treating industrial effluent and their correlation to settling problems. Applied Microbiology and Biotechnology 2010, 88 (5), 1205-1214. https://doi.org/10.1007/s00253-010-2829-3

405Namazi, A. B.; Jia, C. Q.; Allen, D. G., Production and characterization of lignocellulosic biomass-derived activated carbon. Water Sci. Technol. 2010, 62 (11), 2637-2646. https://doi.org/10.2166/wst.2010.981

406Navarre, W. W.; Zou, S. B.; Roy, H.; Xie, J. L.; Savchenko, A.; Singer, A.; Edvokimova, E.; Prost, L. R.; Kumar, R.; Ibba, M.; Fang, F. C., PoxA, YjeK, and elongation factor P coordinately modulate virulence and drug resistance in Salmonella enterica. Mol. Cell 2010, 39 (2), 209-221. https://doi.org/10.1016/j.molcel.2010.06.021

407Salimi, F.; Zhuang, K.; Mahadevan, R., Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing. Biotechnol. J. 2010, 5 (7), 726-738. https://doi.org/10.1002/biot.201000159

408She, Y. M.; Xu, X.; Yakunin, A. F.; Dhe-Paganon, S.; Donald, L. J.; Standing, K. G.; Lee, D. C.; Jia, Z.; Cyr, T. D., Mass spectrometry following mild enzymatic digestion reveals phosphorylation of recombinant proteins in Escherichia coli through mechanisms involving direct nucleotide binding. J. Proteome Res. 2010, 9 (6), 3311-3318. https://doi.org/10.1021/pr9011987

409Srinivasan, K.; Mahadevan, R., Characterization of proton production and consumption associated with microbial metabolism. BMC Biotechnol. 2010, 10, 2. https://doi.org/10.1186/1472-6750-10-2

410Tchigvintsev, A.; Xu, X.; Singer, A.; Chang, C.; Brown, G.; Proudfoot, M.; Cui, H.; Flick, R.; Anderson, W. F.; Joachimiak, A.; Galperin, M. Y.; Savchenko, A.; Yakunin, A. F., Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases. J. Mol. Biol. 2010, 402 (3), 524-538. https://doi.org/10.1016/j.jmb.2010.07.050

411Wang, L.; Mavisakalyan, V.; Tillier, E. R. M.; Clark, G. W.; Savchenko, A. V.; Yakunin, A. F.; Master, E. R., Mining bacterial genomes for novel arylesterase activity. Microb. Biotechnol. 2010, 3 (6), 677-690. https://doi.org/10.1111/j.1751-7915.2010.00185.x

412Wood, N.; Tran, H.; Master, E., Improving anaerobic conversion of pulp mill secondary sludge to biogas by pretreatment. Tappi J. 2010, 9 (6), 16-21. https://doi.org/10.32964/tj9.6.16

413Wu, B.; Skarina, T.; Yee, A.; Jobin, M. C.; Dileo, R.; Semesi, A.; Fares, C.; Lemak, A.; Coombes, B. K.; Arrowsmith, C. H.; Singer, A. U.; Savchenko, A., NleG type 3 effectors from enterohaemorrhagic Escherichia coli are U-Box E3 ubiquitin ligases. PLoS Pathogens 2010, 6 (6). https://doi.org/10.1371/journal.ppat.1000960

414Yang, M. I.; Edwards, E. A.; Allen, D. G., Anaerobic treatability and biogas production potential of selected in-mill streams. Water Sci. Technol. 2010, 62 (10), 2427-2434. https://doi.org/10.2166/wst.2010.980

415Yu, Z.; Reichheld, S. E.; Savchenko, A.; Parkinson, J.; Davidson, A. R., A comprehensive analysis of structural and sequence conservation in the TetR family transcriptional regulators. J. Mol. Biol. 2010, 400 (4), 847-864. https://doi.org/10.1016/j.jmb.2010.05.062

416Zhao, J.; Fang, Y.; Scheibe, T. D.; Lovley, D. R.; Mahadevan, R., Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments. J. Contam. Hydrol. 2010, 112 (1-4), 30-44. https://doi.org/10.1016/j.jconhyd.2009.10.002

417Anesiadis, N.; Cluett, W. R.; Mahadevan, R., Model-driven design based on sensitivity analysis for a synthetic biology application. In Computer Aided Chemical Engineering, Pistikopoulos, E. N.; Georgiadis, M. C.; Kokossis, A. C., Eds. Elsevier: 2011; Vol. 29, pp 1446-1450. https://doi.org/https://doi.org/10.1016/B978-0-444-54298-4.50068-4

418Babu, M.; Beloglazova, N.; Flick, R.; Graham, C.; Skarina, T.; Nocek, B.; Gagarinova, A.; Pogoutse, O.; Brown, G.; Binkowski, A.; Phanse, S.; Joachimiak, A.; Koonin, E. V.; Savchenko, A.; Emili, A.; Greenblatt, J.; Edwards, A. M.; Yakunin, A. F., A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol. Microbiol. 2011, 79 (2), 484-502. https://doi.org/10.1111/j.1365-2958.2010.07465.x

419Beloglazova, N.; Petit, P.; Flick, R.; Brown, G.; Savchenko, A.; Yakunin, A. F., Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference. EMBO J. 2011, 30 (22), 4616-4627. https://doi.org/10.1038/emboj.2011.377

420Bester, E.; Kroukamp, O.; Hausner, M.; Edwards, E. A.; Wolfaardt, G. M., Biofilm form and function: Carbon availability affects biofilm architecture, metabolic activity and planktonic cell yield. J. Appl. Microbiol. 2011, 110 (2), 387-398. https://doi.org/10.1111/j.1365-2672.2010.04894.x

421Chan, P. W. Y.; Yakunin, A. F.; Edwards, E. A.; Pai, E. F., Mapping the reaction coordinates of enzymatic defluorination. Journal of the American Chemical Society 2011, 133 (19), 7461-7468. https://doi.org/10.1021/ja200277d

422Chan, W. W. M.; Grostern, A.; Löffler, F. E.; Edwards, E. A., Quantifying the effects of 1,1,1-trichloroethane and 1,1-dichloroethane on chlorinated ethene reductive dehalogenases. Environ. Sci. Technol. 2011, 45 (22), 9693-9702. https://doi.org/10.1021/es201260n

423Clasquin, M. F.; Melamud, E.; Singer, A.; Gooding, J. R.; Xu, X.; Dong, A.; Cui, H.; Campagna, S. R.; Savchenko, A.; Yakunin, A. F.; Rabinowitz, J. D.; Caudy, A. A., Riboneogenesis in yeast. Cell 2011, 145 (6), 969-980. https://doi.org/10.1016/j.cell.2011.05.022

424Deshpande, C. N.; Harrop, S. J.; Boucher, Y.; Hassan, K. A.; Leo, R. D.; Xu, X.; Cui, H.; Savchenko, A.; Chang, C.; Labbate, M.; Paulsen, I. T.; Stokes, H. W.; Curmi, P. M. G.; Mabbutt, B. C., Crystal structure of an integron gene cassette-associated protein from Vibrio cholerae identifies a cationic drug-binding module. PLoS One 2011, 6 (3). https://doi.org/10.1371/journal.pone.0016934

425Di Risio, S.; Hu, C. S.; Saville, B. A.; Liao, D.; Lortie, J., Large-scale, high-solids enzymatic hydrolysis of steam-exploded poplar. Biofuels, Bioproducts and Biorefining 2011, 5 (6), 609-620. https://doi.org/10.1002/bbb.323

426Eckert, T.; Brunner, B.; Edwards, E. A.; Wortmann, U. G., Microbially mediated re-oxidation of sulfide during dissimilatory sulfate reduction by Desulfobacter latus. Geochim. Cosmochim. Acta 2011, 75 (12), 3469-3485. https://doi.org/10.1016/j.gca.2011.03.034

427Edwards, L. A.; Lucas, M.; Edwards, E. A.; Torrente, F.; Heuschkel, R. B.; Klein, N. J.; Murch, S. H.; Bajaj-Elliott, M.; Phillips, A. D., Aberrant response to commensal Bacteroides thetaiotaomicron in Crohn's disease: An ex vivo human organ culture study. Inflamm. Bowel Dis. 2011, 17 (5), 1201-1208. https://doi.org/10.1002/ibd.21501

428Eshaghi, A.; Patel, S. N.; Sarabia, A.; Higgins, R. R.; Savchenko, A.; Stojios, P. J.; Li, Y.; Bastien, N.; Alexander, D. C.; Low, D. E.; Gubbay, J. B., Multidrug-resistant pandemic (H1N1) 2009 infection in immunocompetent child. Emerging Infectious Diseases 2011, 17 (8), 1472-1474. https://doi.org/10.3201/eid1708.102004

429Fang, Y.; Scheibe, T. D.; Mahadevan, R.; Garg, S.; Long, P. E.; Lovley, D. R., Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model. J. Contam. Hydrol. 2011, 122 (1-4), 96-103. https://doi.org/10.1016/j.jconhyd.2010.11.007

430Filippova, E. V.; Chruszcz, M.; Cymborowski, M.; Gu, J.; Savchenko, A.; Edwards, A.; Minor, W., Crystal structure of a putative transcriptional regulator SCO0520 from Streptomyces coelicolor A3(2) reveals an unusual dimer among TetR family proteins. Journal of Structural and Functional Genomics 2011, 12 (3), 149-157. https://doi.org/10.1007/s10969-011-9112-4

431Foumani, M.; Vuong, T. V.; Master, E. R., Altered substrate specificity of the gluco-oligosaccharide oxidase from Acremonium strictum. Biotechnology and Bioengineering 2011, 108 (10), 2261-2269. https://doi.org/10.1002/bit.23149

432Goacher, R. E.; Drajeremic, G.; Master, E. R., Expanding the library of secondary ions that distinguish lignin and polysaccharides in time-of-flight secondary ion mass spectrometry analysis of wood. Anal. Chem. 2011, 83 (3), 804-812. https://doi.org/10.1021/ac1023028

433Goode, C.; Allen, D. G., Effect of calcium on moving-bed biofilm reactor biofilms. Water Environment Research 2011, 83 (3), 220-232. https://doi.org/10.2175/106143010X12780288628255

434Hug, L. A.; Salehi, M.; Nuin, P.; Tillier, E. R.; Edwards, E. A., Design and verification of a pangenome microarray oligonucleotide probe set for Dehalococcoides spp. Applied and Environmental Microbiology 2011, 77 (15), 5361-5369. https://doi.org/10.1128/AEM.00063-11

435Irving, T. E.; Allen, D. G., Species and material considerations in the formation and development of microalgal biofilms. Applied Microbiology and Biotechnology 2011, 92 (2), 283-294. https://doi.org/10.1007/s00253-011-3341-0

436Javaherian, S.; O'Donnell, K. A.; McGuigan, A. P., A fast and accessible methodology for micro-patterning cells on standard culture substrates using Parafilm inserts. PLoS One 2011, 6 (6), e20909. https://doi.org/10.1371/journal.pone.0020909

437Javaherian, S.; O'Donnell, K. A.; McGuigan, A. P., A fast and accessible methodology for micro-patterning cells on standard culture substrates using Parafilm™ inserts. PLoS One 2011, 6 (6). https://doi.org/10.1371/journal.pone.0020909

438Klimecka, M. M.; Chruszcz, M.; Font, J.; Skarina, T.; Shumilin, I.; Onopryienko, O.; Porebski, P. J.; Cymborowski, M.; Zimmerman, M. D.; Hasseman, J.; Glomski, I. J.; Lebioda, L.; Savchenko, A.; Edwards, A.; Minor, W., Structural analysis of a putative aminoglycoside N-acetyltransferase from Bacillus anthracis. J. Mol. Biol. 2011, 410 (3), 411-423. https://doi.org/10.1016/j.jmb.2011.04.076

439Lai, K. K.; Stogios, P. J.; Vu, C.; Xu, X.; Cui, H.; Molloy, S.; Savchenko, A.; Yakunin, A.; Gonzalez, C. F., An inserted α/β subdomain shapes the catalytic pocket of Lactobacillus johnsonii cinnamoyl esterase. PLoS One 2011, 6 (8). https://doi.org/10.1371/journal.pone.0023269

440Li, Y. O.; Diosady, L. L.; Jankowski, S., Folic acid stability in the presence of various formulation components including iron compounds in fortified extruded Ultra Rice® over prolonged storage at 40 °C and 60% relative humidity (RH). Int. J. Food Sci. Technol. 2011, 46 (2), 379-385. https://doi.org/10.1111/j.1365-2621.2010.02494.x

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442Li, Y. O.; Yadava, D.; Lo, K. L.; Diosady, L. L.; Wesley, A. S., Feasibility and optimization study of using cold-forming extrusion process for agglomerating and microencapsulating ferrous fumarate for salt double fortification with iodine and iron. Journal of Microencapsulation 2011, 28 (7), 639-649. https://doi.org/10.3109/02652048.2011.604434

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581Londono, C.; Soleas, J.; Lücker, P. B.; Sathananthan, S.; Aitchison, J. S.; McGuigan, A. P., Multiwell plate tools for controlling cellular alignment with grooved topography. Methods Mol. Biol. 2014, 1202, 37-55. https://doi.org/10.1007/7651_2014_76

582Loza-Correa, M.; Sahr, T.; Rolando, M.; Daniels, C.; Petit, P.; Skarina, T.; Gomez Valero, L.; Dervins-Ravault, D.; Honoré, N.; Savchenko, A.; Buchrieser, C., The Legionella pneumophila kai operon is implicated in stress response and confers fitness in competitive environments. Environ. Microbiol. 2014, 16 (2), 359-381. https://doi.org/10.1111/1462-2920.12223

583Lücker, P. B.; Javaherian, S.; Soleas, J. P.; Halverson, D.; Zandstra, P. W.; McGuigan, A. P., A microgroove patterned multiwell cell culture plate for high-throughput studies of cell alignment. Biotechnology and Bioengineering 2014, 111 (12), 2537-2548. https://doi.org/10.1002/bit.25298

584Luo, F.; Gitiafroz, R.; Devine, C. E.; Gong, Y.; Hug, L. A.; Raskin, L.; Edwards, E. A., Metatranscriptome of an anaerobic benzene-degrading, nitrate-reducing enrichment culture reveals involvement of carboxylation in benzene ring activation. Applied and Environmental Microbiology 2014, 80 (14), 4095-4107. https://doi.org/10.1128/AEM.00717-14

585Meyer, T.; Edwards, E. A., Anaerobic digestion of pulp and paper mill wastewater and sludge. Water Res. 2014, 65, 321-349. https://doi.org/10.1016/j.watres.2014.07.022

586Meziane-Cherif, D.; Stogios, P. J.; Evdokimova, E.; Savchenko, A.; Courvalin, P., Structural basis for the evolution of vancomycin resistance D,D-peptidases. Proceedings of the National Academy of Sciences of the United States of America 2014, 111 (16), 5872-5877. https://doi.org/10.1073/pnas.1402259111

587Paz, A. C.; Soleas, J.; Poon, J. C. H.; Trieu, D.; Waddell, T. K.; McGuigan, A. P., Challenges and opportunities for tissue-engineering polarized epithelium. Tissue Engineering - Part B: Reviews 2014, 20 (1), 56-72. https://doi.org/10.1089/ten.teb.2013.0144

588Pérez-De-Mora, A.; Zila, A.; McMaster, M. L.; Edwards, E. A., Bioremediation of chlorinated ethenes in fractured bedrock and associated changes in dechlorinating and nondechlorinating microbial populations. Environ. Sci. Technol. 2014, 48 (10), 5770-5779. https://doi.org/10.1021/es404122y

589Pourbafrani, M.; McKechnie, J.; Shen, T.; Saville, B. A.; Maclean, H. L., Impacts of pre-treatment technologies and co-products on greenhouse gas emissions and energy use of lignocellulosic ethanol production. Journal of Cleaner Production 2014, 78, 104-111. https://doi.org/10.1016/j.jclepro.2014.04.050

590Prapakornwiriya, N.; Diosady, L. L., Recovery of Sinapic Acid from the Waste Effluent of Mustard Protein Isolation by Ion Exchange Chromatography. J. Am. Oil Chem. Soc. 2014, 91 (2), 357-362. https://doi.org/https://doi.org/10.1007/s11746-013-2366-1

591Schnurr, P. J.; Espie, G. S.; Allen, D. G., The effect of light direction and suspended cell concentrations on algal biofilm growth rates. Applied Microbiology and Biotechnology 2014, 98 (20), 8553-8562. https://doi.org/10.1007/s00253-014-5964-4

592Sinichi, S.; Diosady, L. L., Isopropyl Alcohol Extraction of De-hulled Yellow Mustard Flour. J. Am. Oil Chem. Soc. 2014, 91 (12), 2143-2153. https://doi.org/https://doi.org/10.1007/s11746-014-2556-5

593Stogios, P. J.; Kuhn, M. L.; Evdokimova, E.; Courvalin, P.; Anderson, W. F.; Savchenko, A., Potential for reduction of streptogramin a resistance revealed by structural analysis of acetyltransferase VatA. Antimicrobial Agents and Chemotherapy 2014, 58 (12), 7083-7092. https://doi.org/10.1128/AAC.03743-14

594Suzuki, H.; Vuong, T. V.; Gong, Y.; Chan, K.; Ho, C. Y.; Master, E. R.; Kondo, A., Sequence diversity and gene expression analyses of expansin-related proteins in the white-rot basidiomycete, Phanerochaete carnosa. Fungal Genetics and Biology 2014, 72, 115-123. https://doi.org/10.1016/j.fgb.2014.05.008

595Tabtabaei, S.; Boocock, D. G. B.; Diosady, L. L., Biodiesel Feedstock from Emulsions Produced by Aqueous Processing of Yellow Mustard. J. Am. Oil Chem. Soc. 2014, 91 (7), 1269-1282. https://doi.org/https://doi.org/10.1007/s11746-014-2448-8

596Trieu, D.; Waddell, T. K.; McGuigan, A. P., A microfluidic device to apply shear stresses to polarizing ciliated airway epithelium using air flow. Biomicrofluidics 2014, 8 (6). https://doi.org/10.1063/1.4901930

597Vuong, T. V.; Master, E. R., Fusion of a xylan-binding module to gluco-oligosaccharide oxidase increases activity and promotes stable immobilization. PLoS One 2014, 9 (4), e95170. https://doi.org/10.1371/journal.pone.0095170

598Wang, W.; Mai-Gisondi, G.; Stogios, P. J.; Kaur, A.; Xu, X.; Cui, H.; Turunen, O.; Savchenko, A.; Master, E. R., Elucidation of the molecular basis for arabinoxylan-debranching activity of a thermostable family GH62 α-L-arabinofuranosidase from Streptomyces thermoviolaceus. Applied and Environmental Microbiology 2014, 80 (17), 5317-5329. https://doi.org/10.1128/AEM.00685-14

599Alcaide, M.; Stogios, P. J.; Lafraya, A.; Tchigvintsev, A.; Flick, R.; Bargiela, R.; Chernikova, T. N.; Reva, O. N.; Hai, T.; Leggewie, C. C.; Katzke, N.; La Cono, V.; Matesanz, R.; Jebbar, M.; Jaeger, K. E.; Yakimov, M. M.; Yakunin, A. F.; Golyshin, P. N.; Golyshina, O. V.; Savchenko, A.; Ferrer, M., Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats. Environ. Microbiol. 2015, 17 (2), 332-345. https://doi.org/10.1111/1462-2920.12660

600Alcaide, M.; Tchigvintsev, A.; Martínez-Martínez, M.; Popovic, A.; Reva, O. N.; Lafraya, Á.; Bargiela, R.; Nechitaylo, T. Y.; Matesanz, R.; Cambon-Bonavita, M. A.; Jebbar, M.; Yakimov, M. M.; Savchenko, A.; Golyshina, O. V.; Yakunin, A. F.; Golyshin, P. N.; Ferrer, M., Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics. Applied and Environmental Microbiology 2015, 81 (6), 2125-2136. https://doi.org/10.1128/AEM.03387-14

601Beloglazova, N.; Kuznedelov, K.; Flick, R.; Datsenko, K. A.; Brown, G.; Popovic, A.; Lemak, S.; Semenova, E.; Severinov, K.; Yakunin, A. F., CRISPR RNA binding and DNA target recognition by purified Cascade complexes from Escherichia coli. Nucleic Acids Res. 2015, 43 (1), 530-543. https://doi.org/10.1093/nar/gku1285

602Beloglazova, N.; Lemak, S.; Flick, R.; Yakunin, A. F., Analysis of nuclease activity of Cas1 proteins against complex DNA substrates. Methods Mol. Biol. 2015, 1311, 251-64. https://doi.org/10.1007/978-1-4939-2687-9_16

603Bonilla, S.; Tran, H.; Allen, D. G., Enhancing pulp and paper mill biosludge dewaterability using enzymes. Water Res. 2015, 68, 692-700. https://doi.org/10.1016/j.watres.2014.10.057

604Couturier, M.; Navarro, D.; Chevret, D.; Henrissat, B.; Piumi, F.; Ruiz-Dueñas, F. J.; Martinez, A. T.; Grigoriev, I. V.; Riley, R.; Lipzen, A.; Berrin, J. G.; Master, E. R.; Rosso, M. N., Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus. Biotechnol Biofuels 2015, 8, 216. https://doi.org/10.1186/s13068-015-0407-8

605Cox, G.; Stogios, P. J.; Savchenko, A.; Wright, G. D., Structural and molecular basis for resistance to aminoglycoside antibiotics by the adenylyltransferase ANT(2″)-Ia. mBio 2015, 6 (1). https://doi.org/10.1128/mBio.02180-14

606Crowe, A. M.; Stogios, P. J.; Casabon, I.; Evdokimova, E.; Savchenko, A.; Eltis, L. D., Structural and functional characterization of a ketosteroid transcriptional regulator of Mycobacterium tuberculosis. J. Biol. Chem. 2015, 290 (2), 872-882. https://doi.org/10.1074/jbc.M114.607481

607D'Arcangelo, E.; McGuigan, A. P., Micropatterning strategies to engineer controlled cell and tissue architecture in vitro. BioTechniques 2015, 58 (1), 13-23. https://doi.org/10.2144/000114245

608Dumitrache, A.; Eberl, H. J.; Allen, D. G.; Wolfaardt, G. M., Mathematical modeling to validate on-line CO2 measurements as a metric for cellulolytic biofilm activity in continuous-flow bioreactors. Biochem. Eng. J. 2015, 101, 55-67. https://doi.org/10.1016/j.bej.2015.04.022

609Ebrahim, A.; Almaas, E.; Bauer, E.; Bordbar, A.; Burgard, A. P.; Chang, R. L.; Dräger, A.; Famili, I.; Feist, A. M.; Fleming, R. M. T.; Fong, S. S.; Hatzimanikatis, V.; Holder, A.; Hucka, M.; Hyduke, D.; Jamshidi, N.; Lee, S. Y.; Le Novère, N.; Lerman, J. A.; Lewis, N. E.; Ma, D.; Mahadevan, R.; Maranas, C.; Nagarajan, H.; Navid, A.; Nielsen, J.; Nielsen, L. K.; Nogales, J.; Noronha, A.; Pal, C.; Palsson, B. O.; Papin, J. A.; Patil, K. R.; Price, N. D.; Reed, J. L.; Saunders, M.; Senger, R. S.; Sonnenschein, N.; Sun, Y.; Thiele, I., Do genome-scale models need exact solvers or clearer standards? Mol. Syst. Biol. 2015, 11 (10), 831. https://doi.org/10.15252/msb.20156157

610Foumani, M.; Vuong, T. V.; MacCormick, B.; Master, E. R., Enhanced Polysaccharide Binding and Activity on Linear β-Glucans through Addition of Carbohydrate-Binding Modules to Either Terminus of a Glucooligosaccharide Oxidase. PLoS One 2015, 10 (5), e0125398. https://doi.org/10.1371/journal.pone.0125398

611Gandla, M. L.; Derba-Maceluch, M.; Liu, X.; Gerber, L.; Master, E. R.; Mellerowicz, E. J.; Jönsson, L. J., Expression of a fungal glucuronoyl esterase in Populus: Effects on wood properties and saccharification efficiency. Phytochemistry 2015, 112 (1), 210-220. https://doi.org/10.1016/j.phytochem.2014.06.002

612Gaona, A.; Lawryshyn, Y.; Saville, B., The effect of fed-batch operation and rotational speed on high-solids enzymatic hydrolysis of hardwood substrates. Industrial Biotechnology 2015, 11 (5), 277-283. https://doi.org/10.1089/ind.2014.0031

613Gawand, P.; Said Abukar, F.; Venayak, N.; Partow, S.; Motter, A. E.; Mahadevan, R., Sub-optimal phenotypes of double-knockout mutants of Escherichia coli depend on the order of gene deletions. Integrative biology : quantitative biosciences from nano to macro 2015, 7 (8), 930-939. https://doi.org/10.1039/c5ib00096c

614Genin, S. N.; Aitchison, J. S.; Allen, D. G., Novel waveguide reactor design for enhancing algal biofilm growth. Algal Research 2015, 12, 529-538. https://doi.org/10.1016/j.algal.2015.10.013

615Gold, N. D.; Gowen, C. M.; Lussier, F.-X.; Cautha, S. C.; Mahadevan, R.; Martin, V. J. J., Metabolic engineering of a tyrosine-overproducing yeast platform using targeted metabolomics. Microbial Cell Factories 2015, 14 (1), 73. https://doi.org/10.1186/s12934-015-0252-2

616Halavaty, A. S.; Rich, R. L.; Chen, C.; Joo, J. C.; Minasov, G.; Dubrovska, I.; Winsor, J. R.; Myszka, D. G.; Duban, M.; Shuvalova, L.; Yakunin, A. F.; Anderson, W. F., Structural and functional analysis of betaine aldehyde dehydrogenase from Staphylococcus aureus. Acta Crystallogr. Sect. D. Biol. Crystallogr. 2015, 71, 1159-1175. https://doi.org/10.1107/S1399004715004228

617Hug, L. A.; Edwards, E. A., Corrigendum: Diversity of reductive dehalogenase genes from environmental samples and enrichment cultures identified with degenerate primer PCR screens. Front. Microbiol. 2015, 6, 30. https://doi.org/10.3389/fmicb.2015.00030

618Huynh, E.; Leung, B. Y. C.; Helfield, B. L.; Shakiba, M.; Gandier, J. A.; Jin, C. S.; Master, E. R.; Wilson, B. C.; Goertz, D. E.; Zheng, G., In situ conversion of porphyrin microbubbles to nanoparticles for multimodality imaging. Nature Nanotechnology 2015, 10 (4), 325-332. https://doi.org/10.1038/nnano.2015.25

619Islam, M. A.; Zengler, K.; Edwards, E. A.; Mahadevan, R.; Stephanopoulos, G., Investigating Moorella thermoacetica metabolism with a genome-scale constraint-based metabolic model. Integrative biology : quantitative biosciences from nano to macro 2015, 7 (8), 869-882. https://doi.org/10.1039/c5ib00095e

620Javaherian, S.; D'Arcangelo, E.; Slater, B.; Zulueta-Coarasa, T.; Fernandez-Gonzalez, R.; McGuigan, A. P., An in vitro model of tissue boundary formation for dissecting the contribution of different boundary forming mechanisms. Integrative biology : quantitative biosciences from nano to macro 2015, 7 (3), 298-312. https://doi.org/10.1039/c4ib00272e

621Kaur, A. P.; Nocek, B. P.; Xu, X.; Lowden, M. J.; Leyva, J. F.; Stogios, P. J.; Cui, H.; Di Leo, R.; Powlowski, J.; Tsang, A.; Savchenko, A., Functional and structural diversity in GH62 α-L-arabinofuranosidases from the thermophilic fungus Scytalidium thermophilum. Microb. Biotechnol. 2015, 8 (3), 419-433. https://doi.org/10.1111/1751-7915.12168

622Klamt, S.; Mahadevan, R., On the feasibility of growth-coupled product synthesis in microbial strains. Metab. Eng. 2015, 30, 166-178. https://doi.org/10.1016/j.ymben.2015.05.006

623Kocur, C. M. D.; Lomheim, L.; Boparai, H. K.; Chowdhury, A. I. A.; Weber, K. P.; Austrins, L. M.; Edwards, E. A.; Sleep, B. E.; O'Carroll, D. M., Contributions of abiotic and biotic dechlorination following carboxymethyl cellulose stabilized nanoscale zero valent iron injection. Environ. Sci. Technol. 2015, 49 (14), 8648-8656. https://doi.org/10.1021/acs.est.5b00719

624Kuznetsova, E.; Nocek, B.; Brown, G.; Makarova, K. S.; Flick, R.; Wolf, Y. I.; Khusnutdinova, A.; Evdokimova, E.; Jin, K.; Tan, K.; Hanson, A. D.; Hasnain, G.; Zallot, R.; De Crécy-Lagard, V.; Babu, M.; Savchenko, A.; Joachimiak, A.; Edwards, A. M.; Koonin, E. V.; Yakunin, A. F., Functional diversity of haloacid dehalogenase superfamily phosphatases from Saccharomyces cerevisiae: Biochemical, structural, and evolutionary insights. J. Biol. Chem. 2015, 290 (30), 18678-18698. https://doi.org/10.1074/jbc.M115.657916

625Liang, X.; Molenda, O.; Tang, S.; Edwards, E. A., Identity and substrate specificity of reductive dehalogenases expressed in Dehalococcoides-containing enrichment cultures maintained on different chlorinated ethenes. Applied and Environmental Microbiology 2015, 81 (14), 4626-4633. https://doi.org/10.1128/AEM.00536-15

626Littunen, K.; Kilpeläinen, P.; Junka, K.; Sipponen, M.; Master, E. R.; Seppälä, J., Effect of xylan structure on reactivity in graft copolymerization and subsequent binding to cellulose. Biomacromolecules 2015, 16 (4), 1102-1111. https://doi.org/10.1021/bm501732b

627Luk, J. M.; Saville, B. A.; MacLean, H. L., Life cycle air emissions impacts and ownership costs of light-duty vehicles using natural gas as a primary energy source. Environ. Sci. Technol. 2015, 49 (8), 5151-5160. https://doi.org/10.1021/es5045387

628Mahadevan, R.; Von Kamp, A.; Klamt, S., Genome-scale strain designs based on regulatory minimal cut sets. Bioinformatics 2015, 31 (17), 2844-2851. https://doi.org/10.1093/bioinformatics/btv217

629Mai-Gisondi, G.; Turunen, O.; Pastinen, O.; Pahimanolis, N.; Master, E. R., Enhancement of acetyl xylan esterase activity on cellulose acetate through fusion to a family 3 cellulose binding module. Enzyme and Microbial Technology 2015, 79-80, 27-33. https://doi.org/10.1016/j.enzmictec.2015.07.001

630Makarova, K. S.; Wolf, Y. I.; Alkhnbashi, O. S.; Costa, F.; Shah, S. A.; Saunders, S. J.; Barrangou, R.; Brouns, S. J. J.; Charpentier, E.; Haft, D. H.; Horvath, P.; Moineau, S.; Mojica, F. J. M.; Terns, R. M.; Terns, M. P.; White, M. F.; Yakunin, A. F.; Garrett, R. A.; Van Der Oost, J.; Backofen, R.; Koonin, E. V., An updated evolutionary classification of CRISPR-Cas systems. Nature Reviews Microbiology 2015, 13 (11), 722-736. https://doi.org/10.1038/nrmicro3569

631McKechnie, J.; Pourbafrani, M.; Saville, B. A.; MacLean, H. L., Environmental and financial implications of ethanol as a bioethylene feedstock versus as a transportation fuel. Environmental Research Letters 2015, 10 (12). https://doi.org/10.1088/1748-9326/10/12/124018

632McKechnie, J.; Pourbafrani, M.; Saville, B. A.; MacLean, H. L., Exploring impacts of process technology development and regional factors on life cycle greenhouse gas emissions of corn stover ethanol. Renewable Energy 2015, 76, 726-734. https://doi.org/10.1016/j.renene.2014.11.088

633Meyer, T.; Edwards, E. A., Corrigendum to "Anaerobic digestion of pulp and paper mill wastewater and sludge" [Water Res. 65 (2014) 321-349]. Water Res. 2015, 68, 849. https://doi.org/10.1016/j.watres.2014.10.059

634Meziane-Cherif, D.; Stogios, P. J.; Evdokimova, E.; Egorova, O.; Savchenko, A.; Courvalin, P., Structural and functional adaptation of vancomycin resistance vant serine racemases. mBio 2015, 6 (4). https://doi.org/10.1128/mBio.00806-15

635Morar, M.; Evdokimova, E.; Chang, C.; Ensminger, A. W.; Savchenko, A., Crystal structure of the Legionella pneumophila lem 10 effector reveals a new member of the HD protein superfamily. Proteins: Structure, Function and Bioinformatics 2015, 83 (12), 2319-2325. https://doi.org/10.1002/prot.24933

636Mulder, D. T.; McPhee, J. B.; Reid-Yu, S. A.; Stogios, P. J.; Savchenko, A.; Coombes, B. K., Multiple histidines in the periplasmic domain of the Salmonella enterica sensor kinase SsrA enhance signaling in response to extracellular acidification. Mol. Microbiol. 2015, 95 (4), 678-691. https://doi.org/10.1111/mmi.12895

637Nakayasu, E. S.; Sydor, M. A.; Brown, R. N.; Sontag, R. L.; Sobreira, T. J. P.; Slysz, G. W.; Humphrys, D. R.; Skarina, T.; Onoprienko, O.; Di Leo, R.; Deatherage Kaiser, B. L.; Li, J.; Ansong, C.; Cambronne, E. D.; Smith, R. D.; Savchenko, A.; Adkins, J. N., Identification of Salmonella typhimurium deubiquitinase SseL substrates by immunoaffinity enrichment and quantitative proteomic analysis. J. Proteome Res. 2015, 14 (9), 4029-4038. https://doi.org/10.1021/acs.jproteome.5b00574

638Namazi, A. B.; Allen, D. G.; Jia, C. Q., Effect of chemical components in white liquor on carbon activation. Can. J. Chem. Eng. 2015, 93 (10), 1705-1712. https://doi.org/10.1002/cjce.22281

639Namazi, A. B.; Allen, D. G.; Jia, C. Q., Microwave-assisted pyrolysis and activation of pulp mill sludge. Biomass Bioenergy 2015, 73, 217-224. https://doi.org/10.1016/j.biombioe.2014.12.023

640Namazi, A. B.; Allen, D. G.; Jia, C. Q., Probing microwave heating of lignocellulosic biomasses. J. Anal. Appl. Pyrolysis 2015, 112, 121-128. https://doi.org/10.1016/j.jaap.2015.02.009

641Pahimanolis, N.; Kilpeläinen, P.; Master, E.; Ilvesniemi, H.; Seppälä, J., Novel thiol- amine- and amino acid functional xylan derivatives synthesized by thiol-ene reaction. Carbohydr. Polym. 2015, 131, 392-398. https://doi.org/10.1016/j.carbpol.2015.06.007

642Parikka, K.; Master, E.; Tenkanen, M., Oxidation with galactose oxidase: Multifunctional enzymatic catalysis. J. Mol. Catal. B: Enzym. 2015, 120, 47-59. https://doi.org/10.1016/j.molcatb.2015.06.006

643Placido, A.; Hai, T.; Ferrer, M.; Chernikova, T. N.; Distaso, M.; Armstrong, D.; Yakunin, A. F.; Toshchakov, S. V.; Yakimov, M. M.; Kublanov, I. V.; Golyshina, O. V.; Pesole, G.; Ceci, L. R.; Golyshin, P. N., Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase. Applied Microbiology and Biotechnology 2015, 99 (23), 10031-10046. https://doi.org/10.1007/s00253-015-6873-x

644Popovic, A.; Tchigvintsev, A.; Tran, H.; Chernikova, T. N.; Golyshina, O. V.; Yakimov, M. M.; Golyshin, P. N.; Yakunin, A. F., Metagenomics as a Tool for Enzyme Discovery: Hydrolytic Enzymes from Marine-Related Metagenomes. Adv Exp Med Biol 2015, 883, 1-20. https://doi.org/10.1007/978-3-319-23603-2_1

645Quaile, A. T.; Urbanus, M. L.; Stogios, P. J.; Nocek, B.; Skarina, T.; Ensminger, A. W.; Savchenko, A., Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila. Structure 2015, 23 (8), 1459-1469. https://doi.org/10.1016/j.str.2015.05.020

646Samadifard, N.; Devine, C. E.; Edwards, E.; Mahadevan, K.; Papangelakis, V. G., Ferric sulfate leaching of pyrrhotite tailings between 30 to 55 °C. Minerals 2015, 5 (4), 801-814. https://doi.org/10.3390/min5040526

647Schnurr, P. J.; Allen, D. G., Factors affecting algae biofilm growth and lipid production: A review. Renewable and Sustainable Energy Reviews 2015, 52, 418-429. https://doi.org/10.1016/j.rser.2015.07.090

648Selig, M. J.; Thygesen, L. G.; Felby, C.; Master, E. R., Debranching of soluble wheat arabinoxylan dramatically enhances recalcitrant binding to cellulose. Biotechnology Letters 2015, 37 (3), 633-641. https://doi.org/10.1007/s10529-014-1705-0

649Selig, M. J.; Vuong, T. V.; Gudmundsson, M.; Forsberg, Z.; Westereng, B.; Felby, C.; Master, E. R., Modified cellobiohydrolase–cellulose interactions following treatment with lytic polysaccharide monooxygenase CelS2 (ScLPMO10C) observed by QCM-D. Cellulose 2015, 22 (4), 2263-2270. https://doi.org/10.1007/s10570-015-0635-x

650Semenova, E.; Kuznedelov, K.; Datsenko, K. A.; Boudry, P. M.; Savitskaya, E. E.; Medvedeva, S.; Beloglazova, N.; Logacheva, M.; Yakunin, A. F.; Severinov, K., The Cas6e ribonuclease is not required for interference and adaptation by the E. Coli type I-E CRISPR-Cas system. Nucleic Acids Res. 2015, 43 (12), 6049-6061. https://doi.org/10.1093/nar/gkv546

651Serbanescu, M. A.; Cordova, M.; Krastel, K.; Flick, R.; Beloglazova, N.; Latos, A.; Yakunin, A. F.; Senadheera, D. B.; Cvitkovitch, D. G., Role of the Streptococcus mutans CRISPR-Cas systems in immunity and cell physiology. J. Bacteriol. 2015, 197 (4), 749-761. https://doi.org/10.1128/JB.02333-14

652Sinichi, S.; Diosady, L. L., Isopropyl alcohol extraction of mustard oil. International News on Fats, Oils and Related Materials 2015, 26 (3), 179-182. https://doi.org/10.21748/inform.03.2015.178

653Soleas, J. P.; Waddell, T. K.; McGuigan, A. P., Topographically grooved gel inserts for aligning epithelial cells during air-liquid-interface culture. Biomaterials Science 2015, 3 (1), 121-133. https://doi.org/10.1039/c4bm00237g

654Sontag, R. L.; Mihai, C.; Orr, G.; Savchenko, A.; Skarina, T.; Cui, H.; Cort, J. R.; Adkins, J. N.; Brown, R. N., Electroporation of functional bacterial effectors into mammalian cells. Journal of Visualized Experiments 2015, (95). https://doi.org/10.3791/52296

655Srinivasan, S.; Cluett, W. R.; Mahadevan, R., Constructing kinetic models of metabolism at genome-scales: A review. Biotechnol. J. 2015, 10 (9), 1345-1359. https://doi.org/10.1002/biot.201400522

656Stogios, P. J.; Evdokimova, E.; Morar, M.; Koteva, K.; Wright, G. D.; Courvalin, P.; Savchenko, A., Structural and functional plasticity of antibiotic resistance nucleotidylyltransferases revealed by molecular characterization of lincosamide nucleotidylyltransferases Lnu(A) and Lnu(D). J. Mol. Biol. 2015, 427 (12), 2229-2243. https://doi.org/10.1016/j.jmb.2015.04.008

657Tabtabaei, S.; Boocock, D. G. B.; Diosady, L. L., Biodiesel Production from Mustard Emulsion by a Combined Destabilization/Adsorption Process. J. Am. Oil Chem. Soc. 2015, 92 (8), 1205-1217. https://doi.org/10.1007/s11746-015-2677-5

658Tchigvintsev, A.; Tran, H.; Popovic, A.; Kovacic, F.; Brown, G.; Flick, R.; Hajighasemi, M.; Egorova, O.; Somody, J. C.; Tchigvintsev, D.; Khusnutdinova, A.; Chernikova, T. N.; Golyshina, O. V.; Yakimov, M. M.; Savchenko, A.; Golyshin, P. N.; Jaeger, K. E.; Yakunin, A. F., The environment shapes microbial enzymes: Five cold-active and salt-resistant carboxylesterases from marine metagenomes. Applied Microbiology and Biotechnology 2015, 99 (5), 2165-2178. https://doi.org/10.1007/s00253-014-6038-3

659Toh, S.; Holbrook-Smith, D.; Stogios, P. J.; Onopriyenko, O.; Lumba, S.; Tsuchiya, Y.; Savchenko, A.; McCourt, P., Structure-function analysis identifies highly sensitive strigolactone receptors in Striga. Science 2015, 350 (6257), 203-207. https://doi.org/10.1126/science.aac9476

660Tsai, A. Y. L.; Goacher, R. E.; Master, E. R., Detecting changes in Arabidopsis cell wall composition using time-of-flight secondary ion mass spectrometry. Surf. Interface Anal. 2015, 47 (5), 626-631. https://doi.org/10.1002/sia.5756

661Venayak, N.; Anesiadis, N.; Cluett, W. R.; Mahadevan, R., Engineering metabolism through dynamic control. Curr. Opin. Biotechnol. 2015, 34, 142-152. https://doi.org/10.1016/j.copbio.2014.12.022

662Wallenius, J.; Pahimanolis, N.; Zoppe, J.; Kilpeläinen, P.; Master, E.; Ilvesniemi, H.; Seppälä, J.; Eerikäinen, T.; Ojamo, H., Continuous propionic acid production with Propionibacterium acidipropionici immobilized in a novel xylan hydrogel matrix. Bioresour. Technol. 2015, 197, 1-6. https://doi.org/10.1016/j.biortech.2015.08.037

663Yang, L.; Srinivasan, S.; Mahadevan, R.; Cluett, W. R., Characterizing metabolic pathway diversification in the context of perturbation size. Metab. Eng. 2015, 28, 114-122. https://doi.org/10.1016/j.ymben.2014.11.013

664Bonilla T, S.; Allen, D. G., Flocculation with lysozyme: A Non-Enzymatic Application. Can. J. Chem. Eng. 2016, 94 (2), 231-237. https://doi.org/10.1002/cjce.22386

665Chen, S.; White, C. E.; diCenzo, G. C.; Zhang, Y.; Stogios, P. J.; Savchenko, A.; Finan, T. M., L-Hydroxyproline and D-proline catabolism in Sinorhizobium meliloti. J. Bacteriol. 2016, 198 (7), 1171-1181. https://doi.org/10.1128/JB.00961-15

666Chu, P. L.; Vanderghem, C.; MacLean, H. L.; Saville, B. A., Financial analysis and risk assessment of hydroprocessed renewable jet fuel production from camelina, carinata and used cooking oil. Applied Energy 2016, 198, 401-409. https://doi.org/10.1016/j.apenergy.2016.12.001

667Euler, C. K.; Mahadevan, R., Protein-level control of metabolism: Design principles and prospects from a representative system. IFAC-PapersOnLine 2016, 49 (26), 165-170. https://doi.org/10.1016/j.ifacol.2016.12.120

668Fitamo, T. M.; Dahl, O.; Master, E.; Meyer, T., Biochemical methane potential of kraft bleaching effluent and codigestion with other in-mill streams. Tappi J. 2016, 15 (2), 80-88. https://doi.org/10.32964/tj15.2.80

669Gagarinova, A.; Stewart, G.; Samanfar, B.; Phanse, S.; White, C. A.; Aoki, H.; Deineko, V.; Beloglazova, N.; Yakunin, A. F.; Golshani, A.; Brown, E. D.; Babu, M.; Emili, A., Systematic genetic screens reveal the dynamic global functional organization of the bacterial translation machinery. Cell Rep. 2016, 17 (3), 904-916. https://doi.org/10.1016/j.celrep.2016.09.040

670Gerbrandt, K.; Chu, P. L.; Simmonds, A.; Mullins, K. A.; MacLean, H. L.; Griffin, W. M.; Saville, B. A., Life cycle assessment of lignocellulosic ethanol: A review of key factors and methods affecting calculated GHG emissions and energy use. Curr. Opin. Biotechnol. 2016, 38, 63-70. https://doi.org/10.1016/j.copbio.2015.12.021

671Griffin, W. M.; Saville, B. A.; MacLean, H. L., Chapter 2 - Ethanol Use in the United States: Status, Threats and the Potential Future. In Global Bioethanol, Salles-Filho, S. L. M.; Cortez, L. A. B.; da Silveira, J. M. F. J.; Trindade, S. C.; Fonseca, M. d. G. D., Eds. Academic Press: 2016; pp 34-62. https://doi.org/https://doi.org/10.1016/B978-0-12-803141-4.00002-2

672Hajighasemi, M.; Nocek, B. P.; Tchigvintsev, A.; Brown, G.; Flick, R.; Xu, X.; Cui, H.; Hai, T.; Joachimiak, A.; Golyshin, P. N.; Savchenko, A.; Edwards, E. A.; Yakunin, A. F., Biochemical and structural insights into enzymatic depolymerization of polylactic acid and other polyesters by microbial carboxylesterases. Biomacromolecules 2016, 17 (6), 2027-2039. https://doi.org/10.1021/acs.biomac.6b00223

673Huang, L.; Khusnutdinova, A.; Nocek, B.; Brown, G.; Xu, X.; Cui, H.; Petit, P.; Flick, R.; Zallot, R.; Balmant, K.; Ziemak, M. J.; Shanklin, J.; De Crécy-Lagard, V.; Fiehn, O.; Gregory, J. F.; Joachimiak, A.; Savchenko, A.; Yakunin, A. F.; Hanson, A. D., A family of metal-dependent phosphatases implicated in metabolite damage-control. Nat. Chem. Biol. 2016, 12 (8), 621-627. https://doi.org/10.1038/nchembio.2108

674Islam, M. A.; Tchigvintsev, A.; Yim, V.; Savchenko, A.; Yakunin, A. F.; Mahadevan, R.; Edwards, E. A., Experimental validation of in silico model-predicted isocitrate dehydrogenase and phosphomannose isomerase from Dehalococcoides mccartyi. Microb. Biotechnol. 2016, 9 (1), 47-60. https://doi.org/10.1111/1751-7915.12315

675Khaksar Toroghi, M.; Cluett, W. R.; Mahadevan, K., Multi-scale metabolic modelling approach for predicting blood alcohol concentration. IEEE Life Sciences Letters 2016, 2 (4), 59-62.

676Kocur, C. M. D.; Lomheim, L.; Molenda, O.; Weber, K. P.; Austrins, L. M.; Sleep, B. E.; Boparai, H. K.; Edwards, E. A.; O'Carroll, D. M., Long-term field study of microbial community and dechlorinating activity following carboxymethyl cellulose-stabilized nanoscale zero-valent iron injection. Environ. Sci. Technol. 2016, 50 (14), 7658-7670. https://doi.org/10.1021/acs.est.6b01745

677Kumar, A.; Beloglazova, N.; Bundalovic-Torma, C.; Phanse, S.; Deineko, V.; Gagarinova, A.; Musso, G.; Vlasblom, J.; Lemak, S.; Hooshyar, M.; Minic, Z.; Wagih, O.; Mosca, R.; Aloy, P.; Golshani, A.; Parkinson, J.; Emili, A.; Yakunin, A. F.; Babu, M., Conditional epistatic interaction maps reveal global functional rewiring of genome integrity pathways in Escherichia coli. Cell Rep. 2016, 14 (3), 648-661. https://doi.org/10.1016/j.celrep.2015.12.060

678Luk, J. M.; Saville, B. A.; MacLean, H. L., Impact of non-petroleum vehicle fuel economy on GHG mitigation potential. Environmental Research Letters 2016, 11 (4). https://doi.org/10.1088/1748-9326/11/4/044001

679Luk, J. M.; Saville, B. A.; MacLean, H. L., Vehicle attribute trade-offs to meet the 2025 CAFE fuel economy target. Transportation Research Part D: Transport and Environment 2016, 49, 154-171. https://doi.org/10.1016/j.trd.2016.09.005

680MacDonald, J.; Goacher, R. E.; Abou-Zaid, M.; Master, E. R., Comparative analysis of lignin peroxidase and manganese peroxidase activity on coniferous and deciduous wood using ToF-SIMS. Applied Microbiology and Biotechnology 2016, 100 (18), 8013-8020. https://doi.org/10.1007/s00253-016-7560-2

681Mayer-Blackwell, K.; Fincker, M.; Molenda, O.; Callahan, B.; Sewell, H.; Holmes, S.; Edwards, E. A.; Spormann, A. M., 1,2-Dichloroethane exposure alters the population structure, metabolism, and kinetics of a trichloroethene-dechlorinating Dehalococcoides mccartyi consortium. Environ. Sci. Technol. 2016, 50 (22), 12187-12196. https://doi.org/10.1021/acs.est.6b02957

682McGregor, N.; Morar, M.; Fenger, T. H.; Stogios, P.; Lenfant, N.; Yin, V.; Xu, X.; Evdokimova, E.; Cui, H.; Henrissat, B.; Savchenko, A.; Brumer, H., Structure-function analysis of a mixed-linkage β-glucanase/xyloglucanase from the key ruminal bacteroidetes Prevotella bryantii B14. J. Biol. Chem. 2016, 291 (3), 1175-1197. https://doi.org/10.1074/jbc.M115.691659

683McGuigan, A. P.; Javaherian, S., Tissue Patterning: Translating Design Principles from In Vivo to In Vitro. Annu. Rev. Biomed. Eng. 2016, 18, 1-24. https://doi.org/10.1146/annurev-bioeng-083115-032943

684McKechnie, J.; Saville, B.; MacLean, H. L., Steam-treated wood pellets: Environmental and financial implications relative to fossil fuels and conventional pellets for electricity generation. Applied Energy 2016, 180, 637-649. https://doi.org/10.1016/j.apenergy.2016.08.024

685Meyer, T.; Yang, M. I.; Tran, H. N.; Allen, D. G.; Edwards, E. A., Impact of resin and fatty acids on full-scale anaerobic treatment of pulp and paper mill effluents. Environ. Eng. Sci. 2016, 33 (6), 394-403. https://doi.org/10.1089/ees.2015.0395

686Mimura, M.; Zallot, R.; Niehaus, T. D.; Hasnain, G.; Gidda, S. K.; Nguyen, T. N. D.; Anderson, E. M.; Mullen, R. T.; Brown, G.; Yakunin, A. F.; de Crécy-Lagard, V.; Gregory, J. F., III; McCarty, D. R.; Hanson, A. D., Arabidopsis TH2 encodes the orphan enzyme thiamin monophosphate phosphatase. Plant Cell 2016, 28 (10), 2683-2696. https://doi.org/10.1105/tpc.16.00600

687Molenda, O.; Quaile, A. T.; Edwards, E. A., Dehalogenimonas sp. Strain WBC-2 genome and identification of its trans-dichloroethene reductive dehalogenase, TdrA. Applied and Environmental Microbiology 2016, 82 (1), 40-50. https://doi.org/10.1128/AEM.02017-15

688Molenda, O.; Tang, S.; Edwards Elizabeth, A., Complete Genome Sequence of Dehalococcoides mccartyi Strain WBC-2, Capable of Anaerobic Reductive Dechlorination of Vinyl Chloride. Genome Announcements 2016, 4 (6), e01375-16. https://doi.org/10.1128/genomeA.01375-16

689Mollerup, F.; Master, E., Influence of a family 29 carbohydrate binding module on the recombinant production of galactose oxidase in Pichia pastoris. Data in Brief 2016, 6, 176-183. https://doi.org/10.1016/j.dib.2015.11.032

690Mollerup, F.; Parikka, K.; Vuong, T. V.; Tenkanen, M.; Master, E., Influence of a family 29 carbohydrate binding module on the activity of galactose oxidase from Fusarium graminearum. Biochimica et Biophysica Acta - General Subjects 2016, 1860 (2), 354-362. https://doi.org/10.1016/j.bbagen.2015.10.023

691Namazi, A. B.; Allen, D. G.; Jia, C. Q., Benefits of microwave heating method in production of activated carbon. Can. J. Chem. Eng. 2016, 94 (7), 1262-1268. https://doi.org/10.1002/cjce.22521

692Otani, H.; Stogios, P. J.; Xu, X.; Nocek, B.; Li, S. N.; Savchenko, A.; Eltis, L. D., The activity of CouR, a MarR family transcriptional regulator, is modulated through a novel molecular mechanism. Nucleic Acids Res. 2016, 44 (2), 595-607. https://doi.org/10.1093/nar/gkv955

693Peniuk, G. T.; Schnurr, P. J.; Allen, D. G., Identification and quantification of suspended algae and bacteria populations using flow cytometry: applications for algae biofuel and biochemical growth systems. J. Appl. Phycol. 2016, 28 (1), 95-104. https://doi.org/10.1007/s10811-015-0569-6

694Rodenhizer, D.; Cojocari, D.; Wouters, B. G.; McGuigan, A. P., Development of TRACER: Tissue roll for analysis of cellular environment and response. Biofabrication 2016, 8 (4). https://doi.org/10.1088/1758-5090/8/4/045008

695Rodenhizer, D.; Gaude, E.; Cojocari, D.; Mahadevan, R.; Frezza, C.; Wouters, B. G.; McGuigan, A. P., A three-dimensional engineered tumour for spatial snapshot analysis of cell metabolism and phenotype in hypoxic gradients. Nature Materials 2016, 15 (2), 227-234. https://doi.org/10.1038/nmat4482

696Rolando, M.; Escoll, P.; Nora, T.; Botti, J.; Boitez, V.; Bedia, C.; Daniels, C.; Abraham, G.; Stogios, P. J.; Skarina, T.; Christophe, C.; Dervins-Ravault, D.; Cazalet, C.; Hilbi, H.; Rupasinghe, T. W. T.; Tull, D.; McConville, M. J.; Ong, S. Y.; Hartland, E. L.; Codogno, P.; Levade, T.; Naderer, T.; Savchenko, A.; Buchrieser, C., Legionella pneumophila S1P-lyase targets host sphingolipid metabolism and restrains autophagy. Proceedings of the National Academy of Sciences of the United States of America 2016, 113 (7), 1901-1906. https://doi.org/10.1073/pnas.1522067113

697Saville, B. A.; Griffin, W. M.; MacLean, H. L., Ethanol Production Technologies in the US: Status and Future Developments. In Global Bioethanol: Evolution, Risks, and Uncertainties, Elsevier Inc.: 2016; pp 163-180. https://doi.org/10.1016/B978-0-12-803141-4.00007-1

698Schnurr, P. J.; Espie, G. S.; Allen, G. D., The effect of photon flux density on algal biofilm growth and internal fatty acid concentrations. Algal Research 2016, 16, 349-356. https://doi.org/10.1016/j.algal.2016.04.001

699Schnurr, P. J.; Molenda, O.; Edwards, E.; Espie, G. S.; Allen, D. G., Improved biomass productivity in algal biofilms through synergistic interactions between photon flux density and carbon dioxide concentration. Bioresour. Technol. 2016, 219, 72-79. https://doi.org/10.1016/j.biortech.2016.06.129

700Shen, A. H.; Howell, D.; Edwards, E.; Warde, P.; Matthew, A.; Jones, J. M., The experience of patients with early-stage testicular cancer during the transition from active treatment to follow-up surveillance. Urologic Oncology: Seminars and Original Investigations 2016, 34 (4). https://doi.org/10.1016/j.urolonc.2015.09.016

701Stogios, P. J.; Cox, G.; Spanogiannopoulos, P.; Pillon, M. C.; Waglechner, N.; Skarina, T.; Koteva, K.; Guarné, A.; Savchenko, A.; Wright, G. D., Rifampin phosphotransferase is an unusual antibiotic resistance kinase. Nature Communications 2016, 7, 1-12. https://doi.org/10.1038/ncomms11343

702Tabtabaei, S.; Hijar, B.; Chen, B. K.; Diosady, L. L., Functional properties of protein isolates produced by aqueous extraction of de-hulled yellow mustard. J. Am. Oil Chem. Soc. 2016, 94 (1), 149-160. https://doi.org/10.1007/s11746-016-2922-6

703Tang, S.; Wang, P. H.; Higgins, S. A.; Löffler, F. E.; Edwards, E. A., Sister Dehalobacter Genomes Reveal Specialization in Organohalide Respiration and Recent Strain Differentiation Likely Driven by Chlorinated Substrates. Front. Microbiol. 2016, 7, 100. https://doi.org/10.3389/fmicb.2016.00100

704Toroghi, M. K.; Cluett, W. R.; Mahadevan, R., Multiscale metabolic modeling approach for predicting blood alcohol concentration. IEEE Life Sciences Letters 2016, 2 (4), 59-62. https://doi.org/10.1109/LLS.2016.2644647

705Toroghi, M. K.; Cluett, W. R.; Mahadevan, R., A multi-scale model of the whole human body based on dynamic parsimonious flux balance analysis. IFAC-PapersOnLine 2016, 49 (7), 937-942. https://doi.org/10.1016/j.ifacol.2016.07.319

706Urbanus, M. L.; Quaile, A. T.; Stogios, P. J.; Morar, M.; Rao, C.; Di Leo, R.; Evdokimova, E.; Lam, M.; Oatway, C.; Cuff, M. E.; Osipiuk, J.; Michalska, K.; Nocek, B. P.; Taipale, M.; Savchenko, A.; Ensminger, A. W., Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila. Mol. Syst. Biol. 2016, 12 (12). https://doi.org/10.15252/msb.20167381

707Vuong, T. V.; Foumani, M.; MacCormick, B.; Kwan, R.; Master, E. R., Direct comparison of gluco-oligosaccharide oxidase variants and glucose oxidase: substrate range and H(2)O(2) stability. Sci. Rep. 2016, 6, 37356. https://doi.org/10.1038/srep37356

708Wang, P. H.; Tang, S.; Nemr, K.; Flick, R.; Yan, J.; Mahadevan, R.; F Yakunin, A.; Löffler, F. E.; Edwards, E. A., Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring Dehalobacter isolates. ISME Journal 2016, 11 (3), 626-640. https://doi.org/10.1038/ismej.2016.158

709Wang, W.; Yan, R.; Nocek, B. P.; Vuong, T. V.; Leo, R. D.; Xu, X.; Cui, H.; Gatenholm, P.; Toriz, G.; Tenkanen, M.; Savchenko, A.; Master, E. R., Biochemical and structural characterization of a five-domain GH115 α-Glucuronidase from the marine bacterium Saccharophagus degradans 2-40T. J. Biol. Chem. 2016, 291 (27), 14120-14133. https://doi.org/10.1074/jbc.M115.702944

710Wei, K.; Grostern, A.; Chan, W. W. M.; Richardson, R. E.; Edwards, E. A., Electron acceptor interactions between organohalide-respiring bacteria: Cross-feeding, competition, and inhibition. In Organohalide-Respiring Bacteria, Springer Berlin Heidelberg: 2016; pp 283-308. https://doi.org/10.1007/978-3-662-49875-0_13

711Wong, M. T.; Wang, W.; Lacourt, M.; Couturier, M.; Edwards, E. A.; Master, E. R., Substrate-Driven Convergence of the Microbial Community in Lignocellulose-Amended Enrichments of Gut Microflora from the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus). Front. Microbiol. 2016, 7, 961. https://doi.org/10.3389/fmicb.2016.00961

712Xiao, Y.; Reis, L. A.; Feric, N.; Knee, E. J.; Gu, J.; Cao, S.; Laschinger, C.; Londono, C.; Antolovich, J.; McGuigan, A. P.; Radisic, M., Diabetic wound regeneration using peptide-modified hydrogels to target re-epithelialization. Proceedings of the National Academy of Sciences of the United States of America 2016, 113 (40), E5792-E5801. https://doi.org/10.1073/pnas.1612277113

713Xu, B.; Rodenhizer, D.; Lakhani, S.; Zhang, X.; Soleas, J. P.; Ailles, L.; McGuigan, A. P., Patterning cellular compartments within TRACER cultures using sacrificial gelatin printing. Biofabrication 2016, 8 (3). https://doi.org/10.1088/1758-5090/8/3/035018

714Andberg, M.; Mollerup, F.; Parikka, K.; Koutaniemi, S.; Boer, H.; Juvonen, M.; Master, E.; Tenkanen, M.; Kruus, K., A Novel Colletotrichum graminicola Raffinose Oxidase in the AA5 Family. Applied and Environmental Microbiology 2017, 83 (20), e01383-17. https://doi.org/10.1128/AEM.01383-17

715Azimi, Y.; Liu, Y.; Tan, T. C.; Allen, D. G.; Farnood, R. R., The tail of two models: Impact of circularity and biomass non-homogeneity on UV disinfection of wastewater flocs. Water Res. 2017, 126, 70-78. https://doi.org/10.1016/j.watres.2017.09.011

716Chu, P. L.; Vanderghem, C.; MacLean, H. L.; Saville, B. A., Process modeling of hydrodeoxygenation to produce renewable jet fuel and other hydrocarbon fuels. Fuel 2017, 196, 298-305. https://doi.org/10.1016/j.fuel.2017.01.097

717Currie, M. A.; Brown, G.; Wong, A.; Ohira, T.; Sugiyama, K.; Suzuki, T.; Yakunin, A. F.; Jia, Z., Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases. RNA 2017, 23 (3), 346-354. https://doi.org/10.1261/rna.057943

718Dueik, V.; Chen, B. K.; Diosady, L. L., Iron-Polyphenol Interaction Reduces Iron Bioavailability in Fortified Tea: Competing Complexation to Ensure Iron Bioavailability. J. Food Qual. 2017, 2017, 1805047. https://doi.org/10.1155/2017/1805047

719Dueik, V.; Diosady, L. L., Microencapsulation of iron in a reversed enteric coating using spray drying technology for double fortification of salt with iodine and iron. J. Food Process Eng. 2017, 40 (2), e12376. https://doi.org/https://doi.org/10.1111/jfpe.12376

720Gandier, J. A.; Langelaan, D. N.; Won, A.; O'Donnell, K.; Grondin, J. L.; Spencer, H. L.; Wong, P.; Tillier, E.; Yip, C.; Smith, S. P.; Master, E. R., Characterization of a Basidiomycota hydrophobin reveals the structural basis for a high-similarity Class I subdivision. Sci. Rep. 2017, 7, 45863. https://doi.org/10.1038/srep45863

721Garg, S.; Judd, K.; Mahadevan, R.; Edwards, E.; Papangelakis, V. G., Leaching characteristics of nickeliferous pyrrhotite tailings from the Sudbury, Ontario area. Can. Metall. Q. 2017, 56 (4), 372-381. https://doi.org/10.1080/00084433.2017.1361162

722Garg, S.; Papangelakis, V.; Edwards, E.; Mahadevan, R., Application of a selective dissolution protocol to quantify the terminal dissolution extents of pyrrhotite and pentlandite from pyrrhotite tailings. Int. J. Miner. Process. 2017, 158, 27-34. https://doi.org/10.1016/j.minpro.2016.11.004

723Gaskell, J.; Kersten, P.; Larrondo, L. F.; Canessa, P.; Martinez, D.; Hibbett, D.; Schmoll, M.; Kubicek, C. P.; Martinez, A. T.; Yadav, J.; Master, E.; Magnuson, J. K.; Yaver, D.; Berka, R.; Lail, K.; Chen, C.; LaButti, K.; Nolan, M.; Lipzen, A.; Aerts, A.; Riley, R.; Barry, K.; Henrissat, B.; Blanchette, R.; Grigoriev, I. V.; Cullen, D., Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12. Genomics Data 2017, 14, 21-23. https://doi.org/10.1016/j.gdata.2017.08.003

724Golyshina, O. V.; Tran, H.; Reva, O. N.; Lemak, S.; Yakunin, A. F.; Goesmann, A.; Nechitaylo, T. Y.; Lacono, V.; Smedile, F.; Slesarev, A.; Rojo, D.; Barbas, C.; Ferrer, M.; Yakimov, M. M.; Golyshin, P. N., Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT. Sci. Rep. 2017, 7 (1). https://doi.org/10.1038/s41598-017-03904-5

725Guzman, I.; Thorpe, S. J.; Papangelakis, V. G., Redox potential measurement during pressure oxidation (POX) of a refractory gold ore. Can. Metall. Q. 2017, 1-8. https://doi.org/10.1080/00084433.2017.1386363

726Javaherian, S.; D'Arcangelo, E.; Slater, B.; Londono, C.; Xu, B.; McGuigan, A. P., Modulation of cellular polarization and migration by ephrin/Eph signal-mediated boundary formation. Integrative Biology (United Kingdom) 2017, 9 (12), 934-946. https://doi.org/10.1039/c7ib00176b

727Joo, J. C.; Khusnutdinova, A. N.; Flick, R.; Kim, T.; Bornscheuer, U. T.; Yakunin, A. F.; Mahadevan, R., Alkene hydrogenation activity of enoate reductases for an environmentally benign biosynthesis of adipic acid. Chemical Science 2017, 8 (2), 1406-1413. https://doi.org/10.1039/c6sc02842j

728Kalami, S.; Arefmanesh, M.; Master, E.; Nejad, M., Replacing 100% of phenol in phenolic adhesive formulations with lignin. J. Appl. Polym. Sci. 2017, 134 (30), 45124. https://doi.org/https://doi.org/10.1002/app.45124

729Khojasteh Salkuyeh, Y.; Saville, B. A.; MacLean, H. L., Techno-economic analysis and life cycle assessment of hydrogen production from natural gas using current and emerging technologies. Int. J. Hydrogen Energy 2017. https://doi.org/10.1016/j.ijhydene.2017.05.219

730Khusnutdinova, A. N.; Flick, R.; Popovic, A.; Brown, G.; Tchigvintsev, A.; Nocek, B.; Correia, K.; Joo, J. C.; Mahadevan, R.; Yakunin, A. F., Exploring Bacterial Carboxylate Reductases for the Reduction of Bifunctional Carboxylic Acids. Biotechnol. J. 2017, 12 (11), 1600751. https://doi.org/https://doi.org/10.1002/biot.201600751

731Klamt, S.; Regensburger, G.; Gerstl, M. P.; Jungreuthmayer, C.; Schuster, S.; Mahadevan, R.; Zanghellini, J.; Müller, S., From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Comput. Biol. 2017, 13 (4), e1005409. https://doi.org/10.1371/journal.pcbi.1005409

732Kolliopoulos, G.; Holland, A. M.; Papangelakis, V. G., Modeling of density and electrical conductivity of aqueous carbonated trimethylamine (TMA–CO2–H2O) solutions at 20 °C. Monatsh. Chem. 2017, 1-8. https://doi.org/10.1007/s00706-017-2091-9

733Littunen, K.; Mai-Gisondi, G.; Seppälä, J.; Master, E. R., Enzymatically debranched xylans in graft copolymerization. Biomacromolecules 2017, 18 (5), 1634-1641. https://doi.org/10.1021/acs.biomac.7b00229

734Mai-Gisondi, G.; Maaheimo, H.; Chong, S. L.; Hinz, S.; Tenkanen, M.; Master, E., Functional comparison of versatile carbohydrate esterases from families CE1, CE6 and CE16 on acetyl-4-O-methylglucuronoxylan and acetyl-galactoglucomannan. Biochim Biophys Acta Gen Subj 2017, 1861 (9), 2398-2405. https://doi.org/10.1016/j.bbagen.2017.06.002

735Mai-Gisondi, G.; Master, E. R., Colorimetric Detection of Acetyl Xylan Esterase Activities. Methods Mol. Biol. 2017, 1588, 45-57. https://doi.org/10.1007/978-1-4939-6899-2_5

736McGee, E. J. T.; Sangakkara, A. R.; Diosady, L. L., Double fortification of salt with folic acid and iodine. J. Food Eng. 2017, 198, 72-80. https://doi.org/10.1016/j.jfoodeng.2016.11.019

737Meyer, T.; Chen, X.; Tran, H. N.; Allen, D. G.; Edwards, E. A., Natural Freezing-Thawing and Its Impact on Dewaterability and Anaerobic Digestibility of Biosludge. Environ. Eng. Sci. 2017, 34 (5), 357-366. https://doi.org/10.1089/ees.2016.0372

738Nouraei, M.; Acosta, E. J., Predicting solubilisation features of ternary phase diagrams of fully dilutable lecithin linker microemulsions. Journal of Colloid and Interface Science 2017, 495, 178-190. https://doi.org/http://dx.doi.org/10.1016/j.jcis.2017.01.114

739Pandit, A. V.; Srinivasan, S.; Mahadevan, R., Redesigning metabolism based on orthogonality principles. Nat Commun 2017, 8, 15188. https://doi.org/10.1038/ncomms15188

740Partow, S.; Hyland, P. B.; Mahadevan, R., Synthetic rescue couples NADPH generation to metabolite overproduction in Saccharomyces cerevisiae. Metab. Eng. 2017, 43 (Pt A), 64-70. https://doi.org/10.1016/j.ymben.2017.08.004

741Pereira, L. G.; Maclean, H. L.; Saville, B. A., Financial analyses of potential biojet fuel production technologies. Biofuels, Bioproducts and Biorefining 2017. https://doi.org/10.1002/bbb.1775

742Popovic, A.; Hai, T.; Tchigvintsev, A.; Hajighasemi, M.; Nocek, B.; Khusnutdinova, A. N.; Brown, G.; Glinos, J.; Flick, R.; Skarina, T.; Chernikova, T. N.; Yim, V.; Brüls, T.; Paslier, D. L.; Yakimov, M. M.; Joachimiak, A.; Ferrer, M.; Golyshina, O. V.; Savchenko, A.; Golyshin, P. N.; Yakunin, A. F., Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families. Sci. Rep. 2017, 7. https://doi.org/10.1038/srep44103

743Puentes Jácome, L. A.; Edwards, E. A., A switch of chlorinated substrate causes emergence of a previously undetected native Dehalobacter population in an established Dehalococcoides-dominated chloroethene-dechlorinating enrichment culture. FEMS Microbiol. Ecol. 2017, 93 (12), fix141. https://doi.org/10.1093/femsec/fix141

744Sarv, V.; Trass, O.; Diosady, L. L., Preparation and Characterization of Camelina sativa Protein Isolates and Mucilage. J. Am. Oil Chem. Soc. 2017, 94 (10), 1279-1285. https://doi.org/https://doi.org/10.1007/s11746-017-3031-x

745Sinichi, S.; Boocock, D. G. B.; Diosady, L. L., Production of Isopropyl and Methyl Esters from Yellow Mustard Oil/IPA Miscellas. J. Am. Oil Chem. Soc. 2017, 94 (3), 485-495. https://doi.org/https://doi.org/10.1007/s11746-016-2942-2

746Sinichi, S.; Boocock, D. G. B.; Diosady, L. L., Mixed alcohol transesterification of mustard oil. International News on Fats, Oils and Related Materials 2017, 28 (10), 16-18. https://doi.org/10.21748/inform.10.2017.16

747Tsai, A. Y.; Chan, K.; Ho, C. Y.; Canam, T.; Capron, R.; Master, E. R.; Bräutigam, K., Transgenic expression of fungal accessory hemicellulases in Arabidopsis thaliana triggers transcriptional patterns related to biotic stress and defense response. PLoS One 2017, 12 (3), e0173094. https://doi.org/10.1371/journal.pone.0173094

748Vuong, T. V.; Liu, B.; Sandgren, M.; Master, E. R., Microplate-based detection of lytic polysaccharide monooxygenase activity by fluorescence-labeling of insoluble oxidized products. Biomacromolecules 2017, 18 (2), 610-616. https://doi.org/10.1021/acs.biomac.6b01790

749Wong, M. T.; Wang, W.; Couturier, M.; Razeq, F. M.; Lombard, V.; Lapebie, P.; Edwards, E. A.; Terrapon, N.; Henrissat, B.; Master, E. R., Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment. Front. Microbiol. 2017, 8, 2504. https://doi.org/10.3389/fmicb.2017.02504

750Woolman, M.; Tata, A.; Dara, D.; Meens, J.; D'Arcangelo, E.; Perez, C. J.; Saiyara Prova, S.; Bluemke, E.; Ginsberg, H. J.; Ifa, D.; McGuigan, A.; Ailles, L.; Zarrine-Afsar, A., Rapid determination of the tumour stroma ratio in squamous cell carcinomas with desorption electrospray ionization mass spectrometry (DESI-MS): A proof-of-concept demonstration. Analyst 2017, 142 (17), 3250-3260. https://doi.org/10.1039/c7an00830a

751Yan, R.; Vuong, T. V.; Wang, W.; Master, E. R., Action of a GH115 α-glucuronidase from Amphibacillus xylanus at alkaline condition promotes release of 4-O-methylglucopyranosyluronic acid from glucuronoxylan and arabinoglucuronoxylan. Enzyme and Microbial Technology 2017, 104, 22-28. https://doi.org/10.1016/j.enzmictec.2017.05.004

752Zhai, W.; Wong, M. T.; Luo, F.; Hashmi, M. Z.; Liu, X.; Edwards, E. A.; Tang, X.; Xu, J., Arsenic Methylation and its Relationship to Abundance and Diversity of arsM Genes in Composting Manure. Sci. Rep. 2017, 7 (1), 42198. https://doi.org/10.1038/srep42198

753Balderas-Hernández, V. E.; Correia, K.; Mahadevan, R., Inactivation of the transcription factor mig1 (YGL035C) in Saccharomyces cerevisiae improves tolerance towards monocarboxylic weak acids: acetic, formic and levulinic acid. Journal of Industrial Microbiology and Biotechnology 2018, 45 (8), 735-751. https://doi.org/10.1007/s10295-018-2053-1

754Bonert, M.; Saville, B. A., Principles of Renal Function Measurement (Limitations of Gotch’s Kt/V). Canadian Journal of Kidney Health and Disease 2018, 5. https://doi.org/10.1177/2054358118776020

755Bonilla, S.; Allen, D. G., Cationic proteins for enhancing biosludge dewaterability: A comparative assessment of surface and conditioning characteristics of synthetic polymers, surfactants and proteins. Sep. Purif. Technol. 2018, 191, 200-207. https://doi.org/10.1016/j.seppur.2017.08.048

756Bonilla, S.; Choolaei, Z.; Meyer, T.; Edwards, E. A.; Yakunin, A. F.; Allen, D. G., Evaluating the effect of enzymatic pretreatment on the anaerobic digestibility of pulp and paper biosludge. Biotechnology Reports 2018, 17, 77-85. https://doi.org/10.1016/j.btre.2017.12.009

757Burda-Grabowska, M.; Macegoniuk, K.; Flick, R.; Nocek, B. P.; Joachimiak, A.; Yakunin, A. F.; Mucha, A.; Berlicki, Ł., Bisphosphonic acids and related compounds as inhibitors of nucleotide- and polyphosphate-processing enzymes: A PPK1 and PPK2 case study. Chem. Biol. Drug Des. 2018, 0 (0). https://doi.org/10.1111/cbdd.13439

758Cao, A.; Alluqmani, N.; Buhari, F. H. M.; Wasim, L.; Smith, L. K.; Quaile, A. T.; Shannon, M.; Hakim, Z.; Furmli, H.; Owen, D. M.; Savchenko, A.; Treanor, B., Galectin-9 binds IgM-BCR to regulate B cell signaling. Nature Communications 2018, 9 (1), 3288. https://doi.org/10.1038/s41467-018-05771-8

759Chen, B. K.; Diosady, L. L., Production of food-grade canola proteins by membrane-based process. International News on Fats, Oils and Related Materials 2018, 29 (1), 14-17. https://doi.org/10.21748/inform.01.2018.14

760Coscolín, C.; Martínez-Martínez, M.; Chow, J.; Bargiela, R.; García-Moyano, A.; Bjerga, G. E. K.; Bollinger, A.; Stokke, R.; Steen, I. H.; Golyshina, O. V.; Yakimov, M. M.; Jaeger, K. E.; Yakunin, A. F.; Streit, W. R.; Golyshin, P. N.; Ferrer, M., Relationships between substrate promiscuity and chiral selectivity of esterases from phylogenetically and environmentally diverse microorganisms. Catalysts 2018, 8 (1). https://doi.org/10.3390/catal8010010

761Diep, P.; Mahadevan, R.; Yakunin, A. F., Heavy Metal Removal by Bioaccumulation Using Genetically Engineered Microorganisms. Front Bioeng Biotechnol 2018, 6, 157. https://doi.org/10.3389/fbioe.2018.00157

762Gandier, J. A.; Master, E. R., Pichia pastoris is a Suitable Host for the Heterologous Expression of Predicted Class I and Class II Hydrophobins for Discovery, Study, and Application in Biotechnology. Microorganisms 2018, 6 (1), 3. https://doi.org/10.3390/microorganisms6010003

763Jurak, E.; Suzuki, H.; van Erven, G.; Gandier, J. A.; Wong, P.; Chan, K.; Ho, C. Y.; Gong, Y.; Tillier, E.; Rosso, M. N.; Kabel, M. A.; Miyauchi, S.; Master, E. R., Dynamics of the Phanerochaete carnosa transcriptome during growth on aspen and spruce. BMC Genomics 2018, 19 (1), 815. https://doi.org/10.1186/s12864-018-5210-z

764Klamt, S.; Mahadevan, R.; Hädicke, O., When Do Two-Stage Processes Outperform One-Stage Processes? Biotechnol. J. 2018, 13 (2), 1700539. https://doi.org/https://doi.org/10.1002/biot.201700539

765Kolliopoulos, G.; Martin, J. T.; Papangelakis, V. G., Energy requirements in the separation-regeneration step in forward osmosis using TMA–CO2–H2O as the draw solution. Chem. Eng. Res. Des. 2018, 140, 166-174. https://doi.org/10.1016/j.cherd.2018.10.015

766Koteva, K.; Cox, G.; Kelso, J. K.; Surette, M. D.; Zubyk, H. L.; Ejim, L.; Stogios, P.; Savchenko, A.; Sørensen, D.; Wright, G. D., Rox, a Rifamycin Resistance Enzyme with an Unprecedented Mechanism of Action. Cell Chemical Biology 2018, 25 (4), 403-412.e5. https://doi.org/https://doi.org/10.1016/j.chembiol.2018.01.009

767MacCormick, B.; Vuong, T. V.; Master, E. R., Chemo-enzymatic Synthesis of Clickable Xylo-oligosaccharide Monomers from Hardwood 4-O-Methylglucuronoxylan. Biomacromolecules 2018, 19 (2), 521-530. https://doi.org/10.1021/acs.biomac.7b01642

768Maurício da Fonseca, M. J.; Jurak, E.; Kataja, K.; Master, E. R.; Berrin, J. G.; Stals, I.; Desmet, T.; Van Landschoot, A.; Briers, Y., Analysis of the substrate specificity of α-L-arabinofuranosidases by DNA sequencer-aided fluorophore-assisted carbohydrate electrophoresis. Appl Microbiol Biotechnol 2018, 102 (23), 10091-10102. https://doi.org/10.1007/s00253-018-9389-3

769McGee, E. J. T.; Diosady, L. L., Prevention of iron-polyphenol complex formation by chelation in black tea. LWT - Food Science and Technology 2018, 89, 756-762. https://doi.org/10.1016/j.lwt.2017.11.041

770Meyer, T.; Amin, P.; Allen, D. G.; Tran, H., Dewatering of pulp and paper mill biosludge and primary sludge. Journal of Environmental Chemical Engineering 2018, 6 (5), 6317-6321. https://doi.org/10.1016/j.jece.2018.09.037

771Nemr, K.; Müller, J. E. N.; Joo, J. C.; Gawand, P.; Choudhary, R.; Mendonca, B.; Lu, S.; Yu, X.; Yakunin, A. F.; Mahadevan, R., Engineering a short, aldolase-based pathway for (R)-1,3-butanediol production in Escherichia coli. Metab. Eng. 2018, 48, 13-24. https://doi.org/10.1016/j.ymben.2018.04.013

772Nocek, B. P.; Khusnutdinova, A. N.; Ruszkowski, M.; Flick, R.; Burda, M.; Batyrova, K.; Brown, G.; Mucha, A.; Joachimiak, A.; Berlicki, L.; Yakunin, A. F., Structural Insights into Substrate Selectivity and Activity of Bacterial Polyphosphate Kinases. ACS Catalysis 2018, 8 (11), 10746-10760. https://doi.org/10.1021/acscatal.8b03151

773Pawlowski, A. C.; Stogios, P. J.; Koteva, K.; Skarina, T.; Evdokimova, E.; Savchenko, A.; Wright, G. D., The evolution of substrate discrimination in macrolide antibiotic resistance enzymes. Nature Communications 2018, 9 (1), 112. https://doi.org/10.1038/s41467-017-02680-0

774Pérez-de-Mora, A.; Lacourt, A.; McMaster, M. L.; Liang, X.; Dworatzek, S. M.; Edwards, E. A., Chlorinated Electron Acceptor Abundance Drives Selection of Dehalococcoides mccartyi (D. mccartyi) Strains in Dechlorinating Enrichment Cultures and Groundwater Environments. Front. Microbiol. 2018, 9. https://doi.org/10.3389/fmicb.2018.00812

775Poon, J. C. H.; Liao, Z.; Suzuki, T.; Carleton, M. M.; Soleas, J. P.; Aitchison, J. S.; Karoubi, G.; McGuigan, A. P.; Waddell, T. K., Design of biomimetic substrates for long-term maintenance of alveolar epithelial cells. Biomaterials Science 2018, 6 (2), 292-303. https://doi.org/10.1039/c7bm00647k

776Pratap Singh, A.; Siddiqui, J.; Diosady, L. L., Characterizing the pH-Dependent Release Kinetics of Food-Grade Spray Drying Encapsulated Iron Microcapsules for Food Fortification. Food Bioproc Tech 2018, 11 (2), 435-446. https://doi.org/10.1007/s11947-017-2022-0

777Qiao, W.; Luo, F.; Lomheim, L.; Mack, E. E.; Ye, S.; Wu, J.; Edwards, E. A., A Dehalogenimonas Population Respires 1,2,4-Trichlorobenzene and Dichlorobenzenes. Environ. Sci. Technol. 2018, 52 (22), 13391-13398. https://doi.org/10.1021/acs.est.8b04239

778Qiao, W.; Luo, F.; Lomheim, L.; Mack, E. E.; Ye, S.; Wu, J.; Edwards, E. A., Natural Attenuation and Anaerobic Benzene Detoxification Processes at a Chlorobenzene-Contaminated Industrial Site Inferred from Field Investigations and Microcosm Studies. Environ. Sci. Technol. 2018, 52 (1), 22-31. https://doi.org/10.1021/acs.est.7b04145

779Quaile, A. T.; Stogios, P. J.; Egorova, O.; Evdokimova, E.; Valleau, D.; Nocek, B.; Kompella, P. S.; Peisajovich, S.; Yakunin, A. F.; Ensminger, A. W.; Savchenko, A., The Legionella pneumophila effector Ceg4 is a phosphotyrosine phosphatase that attenuates activation of eukaryotic MAPK pathways. J. Biol. Chem. 2018, 293 (9), 3307-3320. https://doi.org/10.1074/jbc.M117.812727

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781Razeq, F. M.; Jurak, E.; Stogios, P. J.; Yan, R.; Tenkanen, M.; Kabel, M. A.; Wang, W.; Master, E. R., A novel acetyl xylan esterase enabling complete deacetylation of substituted xylans. Biotechnology for Biofuels 2018, 11 (1), 74. https://doi.org/10.1186/s13068-018-1074-3

782Rodenhizer, D.; Dean, T.; D'Arcangelo, E.; McGuigan, A. P., The Current Landscape of 3D In Vitro Tumor Models: What Cancer Hallmarks Are Accessible for Drug Discovery? Advanced Healthcare Materials 2018. https://doi.org/10.1002/adhm.201701174

783Rodenhizer, D.; Dean, T.; Xu, B.; Cojocari, D.; McGuigan, A. P., A three-dimensional engineered heterogeneous tumor model for assessing cellular environment and response. Nat. Protoc. 2018, 13 (9), 1917-1957. https://doi.org/10.1038/s41596-018-0022-9

784Salkuyeh, Y. K.; Saville, B. A.; MacLean, H. L., Techno-economic analysis and life cycle assessment of hydrogen production from different biomass gasification processes. Int. J. Hydrogen Energy 2018. https://doi.org/https://doi.org/10.1016/j.ijhydene.2018.04.024

785Saville, B. A.; Saville, S., Xylooligosaccharidesand arabinoxylanoligosaccharides and their application as prebiotics. Applied Food Biotechnology 2018, 5 (3), 121-130. https://doi.org/10.22037/afb.v%vi%i.20212

786Saville, S.; Saville, B. A., High fiber cane: Pathway to a novel xylooligosaccharide prebiotic and human health. Agro Food Ind. Hi Tech 2018, 29 (6), 36-38.

787Sinichi, S.; Diosady, L. L., Recovery and Recycling of Isopropyl Alcohol Used in Biodiesel Production From Yellow Mustard Oil. J. Am. Oil Chem. Soc. 2018, 95 (6), 753-765. https://doi.org/https://doi.org/10.1002/aocs.12064

788Sinichi, S.; Diosady, L. L., Salting out versus pervaporation in IPA recovery system. International News on Fats, Oils and Related Materials 2018, 29 (9), 23-26. https://doi.org/10.21748/inform.10.2018.0

789Sinichi, S.; Siañez, A. V. L.; Diosady, L. L., Recovery of phenolic compounds from the by-products of yellow mustard protein isolation. Food Res. Int. 2018. https://doi.org/10.1016/j.foodres.2018.10.047

790Srinivasan, S.; Cluett, W. R.; Mahadevan, R., Model-based design of bistable cell factories for metabolic engineering. Bioinformatics 2018, 34 (8), 1363-1371. https://doi.org/10.1093/bioinformatics/btx769

791Stogios, P. J.; Cox, G.; Zubyk, H. L.; Evdokimova, E.; Wawrzak, Z.; Wright, G. D.; Savchenko, A., Substrate Recognition by a Colistin Resistance Enzyme from Moraxella catarrhalis. ACS Chem. Biol. 2018, 13 (5), 1322-1332. https://doi.org/10.1021/acschembio.8b00116

792Telling, J.; Voglesonger, K.; Sutcliffe, C. N.; Lacrampe-Couloume, G.; Edwards, E.; Sherwood Lollar, B., Bioenergetic Constraints on Microbial Hydrogen Utilization in Precambrian Deep Crustal Fracture Fluids. Geomicrobiol. J. 2018, 35 (2), 108-119. https://doi.org/10.1080/01490451.2017.1333176

793Valleau, D.; Little, D. J.; Borek, D.; Skarina, T.; Quaile, A. T.; Di Leo, R.; Houliston, S.; Lemak, A.; Arrowsmith, C. H.; Coombes, B. K.; Savchenko, A., Functional diversification of the NleG effector family in enterohemorrhagic Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 2018, 115 (40), 10004-10009. https://doi.org/10.1073/pnas.1718350115

794Valleau, D.; Quaile, A. T.; Cui, H.; Xu, X.; Evdokimova, E.; Chang, C.; Cuff, M. E.; Urbanus, M. L.; Houliston, S.; Arrowsmith, C. H.; Ensminger, A. W.; Savchenko, A., Discovery of Ubiquitin Deamidases in the Pathogenic Arsenal of Legionella pneumophila. Cell Rep. 2018, 23 (2), 568-583. https://doi.org/https://doi.org/10.1016/j.celrep.2018.03.060

795Venayak, N.; Raj, K.; Jaydeep, R.; Mahadevan, R., An Optimized Bistable Metabolic Switch to Decouple Phenotypic States during Anaerobic Fermentation. ACS Synthetic Biology 2018, 7 (12), 2854-2866. https://doi.org/10.1021/acssynbio.8b00284

796Venayak, N.; von Kamp, A.; Klamt, S.; Mahadevan, R., MoVE identifies metabolic valves to switch between phenotypic states. Nat Commun 2018, 9 (1), 5332. https://doi.org/10.1038/s41467-018-07719-4

797Wang, P.-H.; Khusnutdinova, A. N.; Luo, F.; Xiao, J.; Nemr, K.; Flick, R.; Brown, G.; Mahadevan, R.; Edwards, E. A.; Yakunin, A. F., Biosynthesis and Activity of Prenylated FMN Cofactors. Cell Chemical Biology 2018, 25 (5), 560-570.e6. https://doi.org/https://doi.org/10.1016/j.chembiol.2018.02.007

798Wang, W.; Andric, N.; Sarch, C.; Silva, B. T.; Tenkanen, M.; Master, E. R., Constructing arabinofuranosidases for dual arabinoxylan debranching activity. Biotechnology and Bioengineering 2018, 115 (1), 41-49. https://doi.org/10.1002/bit.26445

799Xu, Y. F.; Lu, W.; Chen, J. C.; Johnson, S. A.; Gibney, P. A.; Thomas, D. G.; Brown, G.; May, A. L.; Campagna, S. R.; Yakunin, A. F.; Botstein, D.; Rabinowitz, J. D., Discovery and Functional Characterization of a Yeast Sugar Alcohol Phosphatase. ACS Chem. Biol. 2018. https://doi.org/10.1021/acschembio.8b00804

800Yan, J.; Bi, M.; Bourdon, A. K.; Farmer, A. T.; Wang, P.-H.; Molenda, O.; Quaile, A. T.; Jiang, N.; Yang, Y.; Yin, Y.; Şimşir, B.; Campagna, S. R.; Edwards, E. A.; Löffler, F. E., Purinyl-cobamide is a native prosthetic group of reductive dehalogenases. Nat. Chem. Biol. 2018, 14 (1), 8-14. https://doi.org/10.1038/nchembio.2512

801Young, M.; Rodenhizer, D.; Dean, T.; D'Arcangelo, E.; Xu, B.; Ailles, L.; McGuigan, A. P., A TRACER 3D Co-Culture tumour model for head and neck cancer. Biomaterials 2018, 164, 54-69. https://doi.org/10.1016/j.biomaterials.2018.01.038

802Ahmad, S.; Wang, B.; Walker, M. D.; Tran, H. K. R.; Stogios, P. J.; Savchenko, A.; Grant, R. A.; McArthur, A. G.; Laub, M. T.; Whitney, J. C., An interbacterial toxin inhibits target cell growth by synthesizing (p)ppApp. Nature 2019. https://doi.org/10.1038/s41586-019-1735-9

803Arnal, G.; Stogios, P. J.; Asohan, J.; Attia, M. A.; Skarina, T.; Viborg, A. H.; Henrissat, B.; Savchenko, A.; Brumer, H., Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74. J. Biol. Chem. 2019, 294 (36), 13233-13247. https://doi.org/10.1074/jbc.RA119.009861

804Aumala, V.; Mollerup, F.; Jurak, E.; Blume, F.; Karppi, J.; Koistinen, A. E.; Schuiten, E.; Voß, M.; Bornscheuer, U.; Deska, J.; Master, E. R., Biocatalytic Production of Amino Carbohydrates through Oxidoreductase and Transaminase Cascades. ChemSusChem 2019, 12 (4), 848-857. https://doi.org/10.1002/cssc.201802580

805Biz, A.; Proulx, S.; Xu, Z.; Siddartha, K.; Mulet Indrayanti, A.; Mahadevan, R., Systems biology based metabolic engineering for non-natural chemicals. Biotechnol. Adv. 2019, 37 (6), 107379. https://doi.org/10.1016/j.biotechadv.2019.04.001

806Burda-Grabowska, M.; Macegoniuk, K.; Flick, R.; Nocek, B. P.; Joachimiak, A.; Yakunin, A. F.; Mucha, A.; Berlicki, Ł., Bisphosphonic acids and related compounds as inhibitors of nucleotide- and polyphosphate-processing enzymes: A PPK1 and PPK2 case study. Chemical Biology and Drug Design 2019, 93 (6), 1197-1206. https://doi.org/10.1111/cbdd.13439

807Correia, K.; Yu, S. M.; Mahadevan, R., AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution. Database 2019, 2019, baz022. https://doi.org/10.1093/database/baz022

808Diosady, L. L.; Mannar, M. G. V.; Krishnaswamy, K., Improving the lives of millions through new double fortification of salt technology. Matern. Child Nutr. 2019, 15 Suppl 3 (Suppl 3), e12773. https://doi.org/10.1111/mcn.12773

809Fedorchuk, T. P.; Khusnutdinova, A. N.; Flick, R.; Yakunin, A. F., Site-directed mutagenesis and stability of the carboxylic acid reductase MAB4714 from Mycobacterium abscessus. J. Biotechnol. 2019, 303, 72-79. https://doi.org/10.1016/j.jbiotec.2019.07.009

810Ferrer, M.; Méndez-García, C.; Bargiela, R.; Chow, J.; Alonso, S.; García-Moyano, A.; Bjerga, G. E. K.; Steen, I. H.; Schwabe, T.; Blom, C.; Vester, J.; Weckbecker, A.; Shahgaldian, P.; de Carvalho, C. C. C. R.; Meskys, R.; Zanaroli, G.; Glöckner, F. O.; Fernández-Guerra, A.; Thambisetty, S.; de la Calle, F.; Golyshina, O. V.; Yakimov, M. M.; Jaeger, K.-E.; Yakunin, A. F.; Streit, W. R.; McMeel, O.; Calewaert, J.-B.; Tonné, N.; Golyshin, P. N.; The, I. C., Decoding the ocean's microbiological secrets for marine enzyme biodiscovery. FEMS Microbiol. Lett. 2019, 366 (1), fny285. https://doi.org/10.1093/femsle/fny285

811Gaona, A.; Lawryshyn, Y.; Saville, B., Enhancing biomass hydrolysis for biofuel production through hydrodynamic modeling and reactor design. Energy Sci. Eng. 2019, 7 (5), 1823-1837. https://doi.org/10.1002/ese3.394

812Guilford, N. G. H.; Lee, H. P.; Kanger, K.; Meyer, T.; Edwards, E. A., Solid-State Anaerobic Digestion of Mixed Organic Waste: The Synergistic Effect of Food Waste Addition on the Destruction of Paper and Cardboard. Environ. Sci. Technol. 2019, 53 (21), 12677-12687. https://doi.org/10.1021/acs.est.9b04644

813Heavner, G. L. W.; Mansfeldt, C. B.; Wilkins, M. J.; Nicora, C. D.; Debs, G. E.; Edwards, E. A.; Richardson, R. E., Detection of Organohalide-Respiring Enzyme Biomarkers at a Bioaugmented TCE-Contaminated Field Site. Front. Microbiol. 2019, 10, 1433. https://doi.org/10.3389/fmicb.2019.01433

814Heckel, B.; Phillips, E.; Edwards, E.; Sherwood Lollar, B.; Elsner, M.; Manefield, M. J.; Lee, M., Reductive Dehalogenation of Trichloromethane by Two Different Dehalobacter restrictus Strains Reveal Opposing Dual Element Isotope Effects. Environ. Sci. Technol. 2019, 53 (5), 2332-2343. https://doi.org/10.1021/acs.est.8b03717

815Hovey, G.; Allen, D. G.; Tran, H., The sticky behavior of pulp and paper mill biosludge during drying. Tappi J. 2019, 18 (6), 353-360. https://doi.org/10.32964/TJ18.6.353

816Khusnutdinova, A. N.; Xiao, J.; Wang, P. H.; Batyrova, K. A.; Flick, R.; Edwards, E. A.; Yakunin, A. F., Prenylated FMN: Biosynthesis, purification, and Fdc1 activation. Methods Enzymol. 2019, 620, 469-488. https://doi.org/10.1016/bs.mie.2019.03.021

817Li, N. T.; Rodenhizer, D.; Mou, J.; Shahaj, A.; Samardzic, K.; McGuigan, A. P., Development of a bioprinting approach for automated manufacturing of multi-cell type biocomposite TRACER strips using contact capillary-wicking. Biofabrication 2019, 12 (1), 015001. https://doi.org/10.1088/1758-5090/ab47e8

818Lihl, C.; Douglas, L. M.; Franke, S.; Pérez-de-Mora, A.; Meyer, A. H.; Daubmeier, M.; Edwards, E. A.; Nijenhuis, I.; Sherwood Lollar, B.; Elsner, M., Mechanistic Dichotomy in Bacterial Trichloroethene Dechlorination Revealed by Carbon and Chlorine Isotope Effects. Environ Sci Technol 2019, 53 (8), 4245-4254. https://doi.org/10.1021/acs.est.8b06643

819Modupe, O.; Krishnaswamy, K.; Diosady, L. L., Technology for Triple Fortification of Salt with Folic Acid, Iron, and Iodine. J. Food Sci. 2019, 84 (9), 2499-2506. https://doi.org/10.1111/1750-3841.14730

820Molenda, O.; Tang, S.; Lomheim, L.; Gautam, V. K.; Lemak, S.; Yakunin, A. F.; Maxwell, K. L.; Edwards, E. A., Extrachromosomal circular elements targeted by CRISPR-Cas in Dehalococcoides mccartyi are linked to mobilization of reductive dehalogenase genes. ISME Journal 2019, 13 (1), 24-38. https://doi.org/10.1038/s41396-018-0254-2

821Mollerup, F.; Aumala, V.; Parikka, K.; Mathieu, Y.; Brumer, H.; Tenkanen, M.; Master, E., A family AA5_2 carbohydrate oxidase from Penicillium rubens displays functional overlap across the AA5 family. PLoS One 2019, 14 (5), e0216546. https://doi.org/10.1371/journal.pone.0216546

822Ndubuisi, R. U.; Sinichi, S.; Chin, Y.-H.; Diosady, L. L., Diesel Precursors Via Catalytic Hydrothermal Deoxygenation of Aqueous Canola Oil Emulsion. J. Am. Oil Chem. Soc. 2019, 96 (5), 535-543. https://doi.org/https://doi.org/10.1002/aocs.12208

823Obnamia, J. A.; Dias, G. M.; MacLean, H. L.; Saville, B. A., Comparison of U.S. Midwest corn stover ethanol greenhouse gas emissions from GREET and GHGenius. Applied Energy 2019, 591-601. https://doi.org/10.1016/j.apenergy.2018.10.091

824Popov, G.; Fiebig-Comyn, A.; Shideler, S.; Coombes, B. K.; Savchenko, A., Complete genome sequence of Citrobacter rodentium strain DBS100. Microbiology Resource Announcements 2019, 8 (24). https://doi.org/10.1128/MRA.00421-19

825Puentes Jácome, L. A.; Wang, P. H.; Molenda, O.; Li, Y. X. J.; Islam, M. A.; Edwards, E. A., Sustained Dechlorination of Vinyl Chloride to Ethene in Dehalococcoides-Enriched Cultures Grown without Addition of Exogenous Vitamins and at Low pH. Environ Sci Technol 2019, 53 (19), 11364-11374. https://doi.org/10.1021/acs.est.9b02339

826Saceleanu, F.; Vuong, T. V.; Master, E. R.; Wen, J. Z., Tunable kinetics of nanoaluminum and microaluminum powders reacting with water to produce hydrogen. Int. J. Energy Res. 2019, 43 (13), 7384-7396. https://doi.org/10.1002/er.4769

827Salmean, C.; Bonilla, S.; Azimi, Y.; Aitchison, J. S.; Allen, D. G., Design and testing of an externally-coupled planar waveguide photobioreactor. Algal Research 2019, 44, 101684. https://doi.org/https://doi.org/10.1016/j.algal.2019.101684

828Sarch, C.; Suzuki, H.; Master, E. R.; Wang, W., Kinetics and regioselectivity of three GH62 α-L-arabinofuranosidases from plant pathogenic fungi. Biochimica et Biophysica Acta - General Subjects 2019, 1863 (6), 1070-1078. https://doi.org/10.1016/j.bbagen.2019.03.020

829Sinichi, S.; Siañez, A. V. L.; Diosady, L. L., Recovery of phenolic compounds from the by-products of yellow mustard protein isolation. Food Res Int 2019, 115, 460-466. https://doi.org/10.1016/j.foodres.2018.10.047

830Slater, B.; Ng, E.; McGuigan, A. P., Local cell coordination does not alter individual cell migration during collective migration but does impact cellular exchange events. Integrative biology : quantitative biosciences from nano to macro 2019, 11 (4), 163-172. https://doi.org/10.1093/intbio/zyz015

831Srinivasan, S.; Cluett, W. R.; Mahadevan, R., A scalable method for parameter identification in kinetic models of metabolism using steady-state data. Bioinformatics 2019, 35 (24), 5216-5225. https://doi.org/10.1093/bioinformatics/btz445

832Toroghi, M. K.; Cluett, W. R.; Mahadevan, R., A multi-scale model for low-density lipoprotein cholesterol (LDL-C) regulation in the human body: Application to quantitative systems pharmacology. Comput. Chem. Eng. 2019, 130, 106507. https://doi.org/https://doi.org/10.1016/j.compchemeng.2019.06.032

833Venayak, N.; Raj, K.; Mahadevan, R., Impact framework: A python package for writing data analysis workflows to interpret microbial physiology. Metab Eng Commun 2019, 9, e00089. https://doi.org/10.1016/j.mec.2019.e00089

834Wang, P.-H.; Correia, K.; Ho, H.-C.; Venayak, N.; Nemr, K.; Flick, R.; Mahadevan, R.; Edwards, E. A., An interspecies malate–pyruvate shuttle reconciles redox imbalance in an anaerobic microbial community. The ISME Journal 2019, 13 (4), 1042-1055. https://doi.org/10.1038/s41396-018-0333-4

835Al-Fahad, A. J.; Al-Fageeh, M. B.; Kharbatia, N. M.; Sioud, S.; Mahadevan, R., Metabolically engineered recombinant Saccharomyces cerevisiae for the production of 2-Deoxy-scyllo-inosose (2-DOI). Metabolic Engineering Communications 2020, 11, e00134. https://doi.org/https://doi.org/10.1016/j.mec.2020.e00134

836Arefmanesh, M.; Vuong, T. V.; Mobley, J. K.; Alinejad, M.; Master, E. R.; Nejad, M., Bromide-Based Ionic Liquid Treatment of Hardwood Organosolv Lignin Yielded a More Reactive Biobased Polyol. Ind. Eng. Chem. Res. 2020, 59 (42), 18740-18747. https://doi.org/10.1021/acs.iecr.0c03718

837Bargiela, R.; Lanthaler, K.; Potter, C.; Ferrer, M.; Yakunin, A.; Paizs, B.; Golyshin, P.; Golyshina, O., Proteome Cold-Shock Response in the Extremely Acidophilic Archaeon, Cuniculiplasma divulgatum. Microorganisms 2020, 8, 759. https://doi.org/10.3390/microorganisms8050759

838Batyrova, K. A.; Khusnutdinova, A. N.; Wang, P. H.; Di Leo, R.; Flick, R.; Edwards, E. A.; Savchenko, A.; Yakunin, A. F., Biocatalytic in Vitro and in Vivo FMN Prenylation and (De)carboxylase Activation. ACS Chem. Biol. 2020, 15 (7), 1874-1882. https://doi.org/10.1021/acschembio.0c00136

839Biz, A.; Mahadevan, R., Overcoming Challenges in Expressing Iron–Sulfur Enzymes in Yeast. Trends Biotechnol. 2020. https://doi.org/https://doi.org/10.1016/j.tibtech.2020.11.005

840Chen, J.; Liu, Y.; Diep, P.; Jo, A.; Nesbø, C.; Edwards, E.; Papangelakis, V.; Mahadevan, R., Complete Genome Sequence of Acidithiobacillus ferridurans JAGS, Isolated from Acidic Mine Drainage. Microbiology Resource Announcements 2020, 9 (13), e00033-20. https://doi.org/doi:10.1128/MRA.00033-20

841Chen, Z.; Tang, X.; Qiao, W.; Puentes Jácome, L. A.; Edwards, E. A.; He, Y.; Xu, J., Nanoscale zero-valent iron reduction coupled with anaerobic dechlorination to degrade hexachlorocyclohexane isomers in historically contaminated soil. J. Hazard. Mater. 2020, 400, 123298. https://doi.org/10.1016/j.jhazmat.2020.123298

842Cheung, S. L.; Allen, D. G.; Short, S. M., Specific quantification of Scenedesmus obliquus and Chlorella vulgaris in mixed-species algal biofilms. Bioresour. Technol. 2020, 295. https://doi.org/10.1016/j.biortech.2019.122251

843Choudhary, R.; Mahadevan, R., Toward a systematic design of smart probiotics. Curr. Opin. Biotechnol. 2020, 64, 199-209. https://doi.org/https://doi.org/10.1016/j.copbio.2020.05.003

844Correia, K.; Mahadevan, R., Pan-Genome-Scale Network Reconstruction: Harnessing Phylogenomics Increases the Quantity and Quality of Metabolic Models. Biotechnol. J. 2020, 15 (10), 1900519. https://doi.org/10.1002/biot.201900519

845D'Arcangelo, E.; Wu, N. C.; Chen, T.; Shahaj, A.; Cadavid, J. L.; Huang, L.; Ailles, L.; McGuigan, A. P., Gels for Live Analysis of Compartmentalized Environments (GLAnCE): A tissue model to probe tumour phenotypes at tumour-stroma interfaces. Biomaterials 2020, 228, 119572. https://doi.org/10.1016/j.biomaterials.2019.119572

846D’Arcangelo, E.; Wu, N. C.; Cadavid, J. L.; McGuigan, A. P., The life cycle of cancer-associated fibroblasts within the tumour stroma and its importance in disease outcome. Br. J. Cancer 2020, 122 (7), 931-942. https://doi.org/10.1038/s41416-019-0705-1

847Dean, T.; Li, N. T.; Cadavid, J. L.; Ailles, L.; McGuigan, A. P., A TRACER culture invasion assay to probe the impact of cancer associated fibroblasts on head and neck squamous cell carcinoma cell invasiveness. Biomaterials science 2020, 8 (11), 3078-3094. https://doi.org/10.1039/c9bm02017a

848Diep, P.; Mahadevan, R.; Yakunin, A. F., A microplate screen to estimate metal-binding affinities of metalloproteins. Anal. Biochem. 2020, 113836. https://doi.org/https://doi.org/10.1016/j.ab.2020.113836

849Fedorchuk, T. P.; Khusnutdinova, A. N.; Evdokimova, E.; Flick, R.; Di Leo, R.; Stogios, P.; Savchenko, A.; Yakunin, A. F., One-Pot Biocatalytic Transformation of Adipic Acid to 6-Aminocaproic Acid and 1,6-Hexamethylenediamine Using Carboxylic Acid Reductases and Transaminases. J. Am. Chem. Soc. 2020, 142 (2), 1038-1048. https://doi.org/10.1021/jacs.9b11761

850Ghazisaidi, H.; Garcia, R. A.; Tran, H.; Yuan, R.; Allen, D. G., Enhancing biosludge dewaterability with hemoglobin from waste blood as a bioflocculant. Polym. 2020, 12 (11), 1-12. https://doi.org/10.3390/polym12112755

851Hersch, S. J.; Watanabe, N.; Stietz, M. S.; Manera, K.; Kamal, F.; Burkinshaw, B.; Lam, L.; Pun, A.; Li, M.; Savchenko, A.; Dong, T. G., Envelope stress responses defend against type six secretion system attacks independently of immunity proteins. Nat Microbiol 2020. https://doi.org/10.1038/s41564-020-0672-6

852Kanger, K.; Guilford, N. G. H.; Lee, H.; Nesbø, C. L.; Truu, J.; Edwards, E. A., Antibiotic resistome and microbial community structure during anaerobic co-digestion of food waste, paper and cardboard. FEMS Microbiol. Ecol. 2020, 96 (2). https://doi.org/10.1093/femsec/fiaa006

853Karppi, J.; Zhao, H.; Chong, S.-L.; Koistinen, A. E.; Tenkanen, M.; Master, E., Quantitative Comparison of Pyranose Dehydrogenase Action on Diverse Xylooligosaccharides. Frontiers in Chemistry 2020, 8. https://doi.org/10.3389/fchem.2020.00011

854Kim, T.; Stogios, P. J.; Khusnutdinova, A. N.; Nemr, K.; Skarina, T.; Flick, R.; Joo, J. C.; Mahadevan, R.; Savchenko, A.; Yakunin, A. F., Rational engineering of 2-deoxyribose-5-phosphate aldolases for the biosynthesis of (R)-1,3-butanediol. J. Biol. Chem. 2020, 295 (2), 597-609. https://doi.org/10.1074/jbc.RA119.011363

855Klamt, S.; Mahadevan, R.; von Kamp, A., Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks. BMC Bioinformatics 2020, 21 (1), 510. https://doi.org/10.1186/s12859-020-03837-3

856Lau, C. H.-F.; DeJong, E. N.; Dussault, F.; Carrillo, C.; Stogios, P. J.; Savchenko, A.; Topp, E., A penicillin-binding protein that can promote advanced-generation cephalosporin resistance and genome adaptation in the opportunistic pathogen Pseudomonas aeruginosa. Int. J. Antimicrob. Agents 2020, 55 (3), 105896. https://doi.org/https://doi.org/10.1016/j.ijantimicag.2020.105896

857Li, N. T.; Co, I. L.; Landon-Brace, N.; Latour, S.; McGuigan, A. P., Tissue-engineered 3D cancer microenvironment for screening therapeutics. In Biomaterials for 3D Tumor Modeling, Elsevier: 2020; pp 453-479. https://doi.org/10.1016/B978-0-12-818128-7.00019-8

858Li, Y.; Khuu, N.; Prince, E.; Tao, H.; Zhang, N.; Chen, Z.; Gevorkian, A.; McGuigan, A. P.; Kumacheva, E., Matrix Stiffness-Regulated Growth of Breast Tumor Spheroids and Their Response to Chemotherapy. Biomacromolecules 2020. https://doi.org/10.1021/acs.biomac.0c01287

859Lieven, C.; Beber, M. E.; Olivier, B. G.; Bergmann, F. T.; Ataman, M.; Babaei, P.; Bartell, J. A.; Blank, L. M.; Chauhan, S.; Correia, K.; Diener, C.; Dräger, A.; Ebert, B. E.; Edirisinghe, J. N.; Faria, J. P.; Feist, A. M.; Fengos, G.; Fleming, R. M. T.; García-Jiménez, B.; Hatzimanikatis, V.; van Helvoirt, W.; Henry, C. S.; Hermjakob, H.; Herrgård, M. J.; Kaafarani, A.; Kim, H. U.; King, Z.; Klamt, S.; Klipp, E.; Koehorst, J. J.; König, M.; Lakshmanan, M.; Lee, D. Y.; Lee, S. Y.; Lee, S.; Lewis, N. E.; Liu, F.; Ma, H.; Machado, D.; Mahadevan, R.; Maia, P.; Mardinoglu, A.; Medlock, G. L.; Monk, J. M.; Nielsen, J.; Nielsen, L. K.; Nogales, J.; Nookaew, I.; Palsson, B. O.; Papin, J. A.; Patil, K. R.; Poolman, M.; Price, N. D.; Resendis-Antonio, O.; Richelle, A.; Rocha, I.; Sánchez, B. J.; Schaap, P. J.; Malik Sheriff, R. S.; Shoaie, S.; Sonnenschein, N.; Teusink, B.; Vilaça, P.; Vik, J. O.; Wodke, J. A. H.; Xavier, J. C.; Yuan, Q.; Zakhartsev, M.; Zhang, C., MEMOTE for standardized genome-scale metabolic model testing. Nat. Biotechnol. 2020, 38 (3), 272-276. https://doi.org/10.1038/s41587-020-0446-y

860Liu, Y.; Chen, J.; Crisante, D.; Jaramillo Lopez, J. M.; Mahadevan, R., Dynamic Cell Programming with Quorum Sensing-Controlled CRISPRi Circuit. ACS Synthetic Biology 2020, 9 (6), 1284-1291. https://doi.org/10.1021/acssynbio.0c00148

861Liu, Y.; Chen, J.; Khusnutdinova, A. N.; Correia, K.; Diep, P.; Batyrova, K. A.; Nemr, K.; Flick, R.; Stogios, P.; Yakunin, A. F.; Mahadevan, R., A novel C-terminal degron identified in bacterial aldehyde decarbonylases using directed evolution. Biotechnol Biofuels 2020, 13, 114. https://doi.org/10.1186/s13068-020-01753-5

862Lomheim, L.; Laquitaine, L.; Rambinaising, S.; Flick, R.; Starostine, A.; Jean-Marius, C.; Edwards, E. A.; Gaspard, S., Evidence for extensive anaerobic dechlorination and transformation of the pesticide chlordecone (C10Cl10O) by indigenous microbes in microcosms from Guadeloupe soil. PLoS One 2020, 15 (4), e0231219. https://doi.org/10.1371/journal.pone.0231219

863Makarova, K. S.; Wolf, Y. I.; Iranzo, J.; Shmakov, S. A.; Alkhnbashi, O. S.; Brouns, S. J. J.; Charpentier, E.; Cheng, D.; Haft, D. H.; Horvath, P.; Moineau, S.; Mojica, F. J. M.; Scott, D.; Shah, S. A.; Siksnys, V.; Terns, M. P.; Venclovas, Č.; White, M. F.; Yakunin, A. F.; Yan, W.; Zhang, F.; Garrett, R. A.; Backofen, R.; van der Oost, J.; Barrangou, R.; Koonin, E. V., Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants. Nature Reviews Microbiology 2020, 18 (2), 67-83. https://doi.org/10.1038/s41579-019-0299-x

864Milovanoff, A.; Posen, I. D.; Saville, B. A.; MacLean, H. L., Well-to-wheel greenhouse gas implications of mid-level ethanol blend deployment in Canada's light-duty fleet. Renewable and Sustainable Energy Reviews 2020, 131, 110012. https://doi.org/https://doi.org/10.1016/j.rser.2020.110012

865Modupe, O.; Maurras, J. B.; Diosady, L. L., A spectrophotometric method for determining the amount of folic acid in fortified salt. J Agric Food Res 2020, 2, 100060. https://doi.org/10.1016/j.jafr.2020.100060

866Molenda, O.; Puentes Jácome, L. A.; Cao, X.; Nesbø, C. L.; Tang, S.; Morson, N.; Patron, J.; Lomheim, L.; Wishart, D. S.; Edwards, E. A., Insights into origins and function of the unexplored majority of the reductive dehalogenase gene family as a result of genome assembly and ortholog group classification. Environ. Sci. Process. Impacts 2020, 22 (3), 663-678. https://doi.org/10.1039/c9em00605b

867Mottiar, Y.; Gierlinger, N.; Jeremic, D.; Master, E. R.; Mansfield, S. D., Atypical lignification in eastern leatherwood (Dirca palustris). New Phytol. 2020, 226 (3), 704-713. https://doi.org/10.1111/nph.16394

868Obnamia, J. A.; MacLean, H. L.; Saville, B. A., Regional variations in life cycle greenhouse gas emissions of canola-derived jet fuel produced in western Canada. GCB Bioenergy 2020, 12 (10), 818-833. https://doi.org/10.1111/gcbb.12735

869Paquette, A. J.; Sharp, C. E.; Schnurr, P. J.; Allen, D. G.; Short, S. M.; Espie, G. S., Dynamic changes in community composition of Scenedesmus-seeded artificial, engineered microalgal biofilms. Algal Research 2020, 46, 101805. https://doi.org/https://doi.org/10.1016/j.algal.2020.101805

870Popov, G.; Evdokimova, E.; Stogios, P. J.; Savchenko, A., Structure of the full-length Serratia marcescens acetyltransferase AAC(3)-Ia in complex with coenzyme A. Protein Sci. 2020, 29 (3), 803-808. https://doi.org/10.1002/pro.3811

871Qiao, W.; Puentes Jácome, L. A.; Tang, X.; Lomheim, L.; Yang, M. I.; Gaspard, S.; Avanzi, I. R.; Wu, J.; Ye, S.; Edwards, E. A., Microbial Communities Associated with Sustained Anaerobic Reductive Dechlorination of α-, β-, γ-, and δ-Hexachlorocyclohexane Isomers to Monochlorobenzene and Benzene. Environ. Sci. Technol. 2020, 54 (1), 255-265. https://doi.org/10.1021/acs.est.9b05558

872Raj, K.; Venayak, N.; Mahadevan, R., Novel two-stage processes for optimal chemical production in microbes. bioRxiv 2020, 803023. https://doi.org/10.1101/803023

873Semper, C.; Stogios, P.; Meziane-Cherif, D.; Evdokimova, E.; Courvalin, P.; Savchenko, A., Structural characterization of aminoglycoside 4′-O-adenylyltransferase ANT(4′)-IIb from Pseudomonas aeruginosa. Protein Sci. 2020, 29 (3), 758-767. https://doi.org/10.1002/pro.3815

874Soleas, J. P.; D'Arcangelo, E.; Huang, L.; Karoubi, G.; Nostro, M. C.; McGuigan, A. P.; Waddell, T. K., Assembly of lung progenitors into developmentally-inspired geometry drives differentiation via cellular tension. Biomaterials 2020, 254. https://doi.org/10.1016/j.biomaterials.2020.120128

875Stogios, P. J.; Savchenko, A., Molecular mechanisms of vancomycin resistance. Protein Sci. 2020, 29 (3), 654-669. https://doi.org/10.1002/pro.3819

876Toroghi, M. K.; Cluett, W. R.; Mahadevan, R., A Personalized Multiscale Modeling Framework for Dose Selection in Precision Medicine. Ind. Eng. Chem. Res. 2020, 59 (21), 9819-9829. https://doi.org/10.1021/acs.iecr.0c01070

877Tratnyek, P. G.; Edwards, E.; Carpenter, L.; Blossom, S., Environmental occurrence, fate, effects, and remediation of halogenated (semi)volatile organic compounds. Environ. Sci. Process. Impacts 2020, 22 (3), 465-471. https://doi.org/10.1039/d0em90008g

878Varma, R.; Soleas, J. P.; Waddell, T. K.; Karoubi, G.; McGuigan, A. P., Current strategies and opportunities to manufacture cells for modeling human lungs. Adv. Drug Del. Rev. 2020, 161-162, 90-109. https://doi.org/10.1016/j.addr.2020.08.005

879Venkatesh, A.; Posen, I. D.; MacLean, H. L.; Chu, P. L.; Griffin, W. M.; Saville, B. A., Environmental Aspects of Biotechnology. Adv. Biochem. Eng. Biotechnol. 2020, 173, 77-119. https://doi.org/10.1007/10_2019_98

880Vuong, T. V.; Master, E. R., Enzymatic production of 4-O-methyl d-glucaric acid from hardwood xylan. Biotechnol Biofuels 2020, 13, 51. https://doi.org/10.1186/s13068-020-01691-2

881Wang, P. H.; Fujishima, K.; Berhanu, S.; Kuruma, Y.; Jia, T. Z.; Khusnutdinova, A. N.; Yakunin, A. F.; McGlynn, S. E., A Bifunctional Polyphosphate Kinase Driving the Regeneration of Nucleoside Triphosphate and Reconstituted Cell-Free Protein Synthesis. ACS Synthetic Biology 2020, 9 (1), 36-42. https://doi.org/10.1021/acssynbio.9b00456

882Yang, M. I.; Previdsa, M.; Edwards, E. A.; Sleep, B. E., Using cell yields and qPCR to estimate biotic contribution to 1,1,1-trichloroethane dechlorination at a field site treated with granular zero valent iron and guar gum. bioRxiv 2020, 583229. https://doi.org/10.1101/583229

883Yang, M. I.; Previdsa, M.; Edwards, E. A.; Sleep, B. E., Two distinct Dehalobacter strains sequentially dechlorinate 1,1,1-trichloroethane and 1,1-dichloroethane at a field site treated with granular zero valent iron and guar gum. Water Res. 2020, 186, 116310. https://doi.org/10.1016/j.watres.2020.116310

884Bahlmann, L. C.; Baker, A. E. G.; Xue, C.; Liu, S.; Meier-Merziger, M.; Karakas, D.; Zhu, L.; Co, I.; Zhao, S.; Chin, A.; McGuigan, A.; Kuruvilla, J.; Laister, R. C.; Shoichet, M. S., Gelatin-Hyaluronan Click-Crosslinked Cryogels Elucidate Human Macrophage Invasion Behavior. Adv. Funct. Mater. 2021, 31 (28), 2008400. https://doi.org/https://doi.org/10.1002/adfm.202008400

885Biz, A.; Mahadevan, R., Overcoming Challenges in Expressing Iron–Sulfur Enzymes in Yeast. Trends Biotechnol. 2021, 39 (7), 665-677. https://doi.org/10.1016/j.tibtech.2020.11.005

886Bordeleau, E.; Stogios Peter, J.; Evdokimova, E.; Koteva, K.; Savchenko, A.; Wright Gerard, D., ApmA Is a Unique Aminoglycoside Antibiotic Acetyltransferase That Inactivates Apramycin. mBio 2021, 12 (1), e02705-20. https://doi.org/10.1128/mBio.02705-20

887Cerruti, M.; Guo, B.; Delatolla, R.; de Jonge, N.; Hommes - de Vos van Steenwijk, A.; Kadota, P.; Lawson, C. E.; Mao, T.; Oosterkamp, M. J.; Sabba, F.; Stokholm-Bjerregaard, M.; Watson, I.; Frigon, D.; Weissbrodt, D. G., Plant-wide systems microbiology for the wastewater industry. Environmental Science: Water Research & Technology 2021, 7 (10), 1687-1706. https://doi.org/10.1039/D1EW00231G

888Chan, Y. K. K.; Gurumeenakshi, G.; Varadharaju, N.; Cheng, Y.-L.; Diosady, L. L., Debittering Moringa oleifera (Lam.) Leaves in Fortified South Indian Instant Soup. Chemosensory Perception 2021, 14 (1), 11-18. https://doi.org/10.1007/s12078-020-09280-1

889Chen, J.; Liu, Y.; Diep, P.; Mahadevan, R., Genomic analysis of a newly isolated acidithiobacillus ferridurans jags strain reveals its adaptation to acid mine drainage. Minerals 2021, 11 (1), 1-14. https://doi.org/10.3390/min11010074

890Choolaei, Z.; Flick, R.; Khusnutdinova, A. N.; Edwards, E. A.; Yakunin, A. F., Lignin-oxidizing activity of bacterial laccases characterized using soluble substrates and polymeric lignin. J. Biotechnol. 2021, 325, 128-137. https://doi.org/10.1016/j.jbiotec.2020.11.007

891Diep, P.; Boucinha, A.; Kell, B.; Yeung, B. A.; Chen, X.; Tsyplenkov, D.; Serra, D.; Escobar, A.; Gnanapragasam, A.; Emond, C. A.; Sajtovich, V. A.; Mahadevan, R.; Kilkenny, D. M.; Gini-Newman, G.; Kaern, M.; Ingalls, B., Advancing undergraduate synthetic biology education: Insights from a canadian igem student perspective. Can. J. Microbiol. 2021, 67 (10), 749-770. https://doi.org/10.1139/cjm-2020-0549

892Edwards, E. A., Electron Balances for Nutrition and Health. J. Nutr. 2021, 151 (2), 277. https://doi.org/10.1093/jn/nxaa372

893Edwards, E. A.; Toth, C. R. A.; Luo, F.; Bawa, N.; Webb, J.; Guo, S.; Dworatzek, S., Anaerobic benzene biodegradation linked to the growth of highly specific bacterial clades. Environ. Sci. Technol. 2021, 55 (12), 7970-7980. https://doi.org/10.1021/acs.est.1c00508

894Gaona, A.; Lawryshyn, Y.; Saville, B. A., High-solids enzymatic hydrolysis of biomass: Hydrodynamics and reaction kinetics integration via numerical modeling. Phys. Fluids 2021, 33 (3), 037107. https://doi.org/10.1063/5.0036138

895Giannari, D.; Ho, C. H.; Mahadevan, R., A gap-filling algorithm for prediction of metabolic interactions in microbial communities. PLoS Comput. Biol. 2021, 17 (11), e1009060. https://doi.org/10.1371/journal.pcbi.1009060

896Haddad Momeni, M.; Fredslund, F.; Bissaro, B.; Raji, O.; Vuong, T. V.; Meier, S.; Nielsen, T. S.; Lombard, V.; Guigliarelli, B.; Biaso, F.; Haon, M.; Grisel, S.; Henrissat, B.; Welner, D. H.; Master, E. R.; Berrin, J. G.; Abou Hachem, M., Discovery of fungal oligosaccharide-oxidising flavo-enzymes with previously unknown substrates, redox-activity profiles and interplay with LPMOs. Nat Commun 2021, 12 (1), 2132. https://doi.org/10.1038/s41467-021-22372-0

897Hameleers, L.; Penttinen, L.; Ikonen, M.; Jaillot, L.; Fauré, R.; Terrapon, N.; Deuss, P. J.; Hakulinen, N.; Master, E. R.; Jurak, E., Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans. Biotechnol Biofuels 2021, 14 (1), 127. https://doi.org/10.1186/s13068-021-01976-0

898Hart, K.; An, S.; Edwards, A. M.; Mahadevan, R.; Master, E. R.; Edwards, E. A., Could open science stimulate industry partnerships in chemical engineering university research? Can. J. Chem. Eng. 2021, 99 (10), 2186-2194. https://doi.org/10.1002/cjce.24077

899Huyer, L. D.; Mandla, S.; Wang, Y.; Campbell, S.; Yee, B.; Euler, C.; Lai, B. F.; Bannerman, D.; Lin, D. S. Y.; Montgomery, M.; Nemr, K.; Bender, T.; Epelman, S.; Mahadevan, R.; Radisic, M., Macrophage immunomodulation through new polymers that recapitulate functional effects of itaconate as a power house of innate immunity. Adv. Funct. Mater. 2021, 31 (6). https://doi.org/10.1002/adfm.202003341

900Inglis, A. M.; Head, N. A.; Chowdhury, A. I. A.; Nunez Garcia, A.; Reynolds, D. A.; Hogberg, D.; Edwards, E.; Lomheim, L.; Weber, K.; Wallace, S. J.; Austrins, L. M.; Hayman, J.; Auger, M.; Sidebottom, A.; Eimers, J.; Gerhard, J. I.; O'Carroll, D. M., Electrokinetically-enhanced emplacement of lactate in a chlorinated solvent contaminated clay site to promote bioremediation. Water Res. 2021, 201, 117305. https://doi.org/https://doi.org/10.1016/j.watres.2021.117305

901Jacome, L. A. P.; Lomheim, L.; Gaspard, S.; Edwards, E. A., Biodegradation of Lindane (Hexachlorocyclohexane) to Nontoxic End Products by Sequential Treatment with Three Mixed Anaerobic Microbial Cultures. Environ. Sci. Technol. 2021, 55 (5), 2968-2979. https://doi.org/10.1021/acs.est.0c07221

902Landon-Brace, N.; Cadavid, J. L.; Latour, S.; Co, I. L.; Rodenhizer, D.; Li, N. T.; Wu, N. C.; Bugbee, E.; Chebotarev, A.; Zhang, J.; Wouters, B. G.; McGuigan, A. P., An Engineered Patient-Derived Tumor Organoid Model That Can Be Disassembled to Study Cellular Responses in a Graded 3D Microenvironment. Adv. Funct. Mater. 2021, 31 (41), 2105349. https://doi.org/https://doi.org/10.1002/adfm.202105349

903Latour, S.; McGuigan, A. P., Easy and robust micropatterning using fibrinogen anchors. J. Cell Biol. 2021, 220 (2), e202012105. https://doi.org/10.1083/jcb.202012105

904Lawson, C. E., Retooling Microbiome Engineering for a Sustainable Future. mSystems 2021, e0092521. https://doi.org/10.1128/mSystems.00925-21

905Lemak, S.; Serbanescu, M. A.; Khusnutdinova, A. N.; Ruszkowski, M.; Beloglazova, N.; Xu, X.; Brown, G.; Cui, H.; Tan, K.; Joachimiak, A.; Cvitkovitch, D. G.; Savchenko, A.; Yakunin, A. F., Structural and biochemical insights into CRISPR RNA processing by the Cas5c ribonuclease SMU1763 from Streptococcus mutans. J. Biol. Chem. 2021, 297 (5), 101251. https://doi.org/10.1016/j.jbc.2021.101251

906Li, Y.; Khuu, N.; Prince, E.; Tao, H.; Zhang, N.; Chen, Z.; Gevorkian, A.; McGuigan, A. P.; Kumacheva, E., Matrix Stiffness-Regulated Growth of Breast Tumor Spheroids and Their Response to Chemotherapy. Biomacromolecules 2021, 22 (2), 419-429. https://doi.org/10.1021/acs.biomac.0c01287

907Liu, Y.; Benitez, M. G.; Chen, J.; Harrison, E.; Khusnutdinova, A. N.; Mahadevan, R., Opportunities and Challenges for Microbial Synthesis of Fatty Acid-Derived Chemicals (FACs). Front Bioeng Biotechnol 2021, 9, 613322. https://doi.org/10.3389/fbioe.2021.613322

908Lomheim, L.; Flick, R.; Rambinaising, S.; Gaspard, S.; Edwards, E. A., Identification of a fully dechlorinated product of chlordecone in soil microcosms and enrichment cultures. Environ. Sci. Techno. Lett. 2021, 8 (8), 662-667. https://doi.org/10.1021/acs.estlett.1c00505

909MacAlpine, J.; Daniel-Ivad, M.; Liu, Z.; Yano, J.; Revie, N. M.; Todd, R. T.; Stogios, P. J.; Sanchez, H.; O'Meara, T. R.; Tompkins, T. A.; Savchenko, A.; Selmecki, A.; Veri, A. O.; Andes, D. R.; Fidel, P. L., Jr.; Robbins, N.; Nodwell, J.; Whitesell, L.; Cowen, L. E., A small molecule produced by Lactobacillus species blocks Candida albicans filamentation by inhibiting a DYRK1-family kinase. Nat Commun 2021, 12 (1), 6151. https://doi.org/10.1038/s41467-021-26390-w

910Mejdani, M.; Haddadi, K.; Pham, C.; Mahadevan, R., SARS-CoV-2 receptor-binding mutations and antibody contact sites. Antib. ther. 2021, 4 (3), 149-158. https://doi.org/10.1093/abt/tbab015

911Modupe, O.; Diosady, L. L., Quadruple fortification of salt for the delivery of iron, iodine, folic acid, and vitamin B(12) to vulnerable populations. J. Food Eng. 2021, 300, 110525. https://doi.org/10.1016/j.jfoodeng.2021.110525

912Modupe, O.; Krishnaswamy, K.; Li, Y. O.; Diosady, L. L., Optimization of Unit Operations for Microencapsulating Ferrous Fumarate During Scale-Up of Double Fortification of Salt with Iron and Iodine. Food Quality and Safety 2021, 5. https://doi.org/10.1093/fqsafe/fyab023

913Modupe, O.; Siddiqui, J.; Jonnalagadda, A.; Diosady, L. L., Folic acid fortification of double fortified salt. Sci. Rep. 2021, 11 (1), 14561. https://doi.org/10.1038/s41598-021-93194-9

914Nayfach, S.; Roux, S.; Seshadri, R.; Udwary, D.; Varghese, N.; Schulz, F.; Wu, D.; Paez-Espino, D.; Chen, I. M.; Huntemann, M.; Palaniappan, K.; Ladau, J.; Mukherjee, S.; Reddy, T. B. K.; Nielsen, T.; Kirton, E.; Faria, J. P.; Edirisinghe, J. N.; Henry, C. S.; Jungbluth, S. P.; Chivian, D.; Dehal, P.; Wood-Charlson, E. M.; Arkin, A. P.; Tringe, S. G.; Visel, A.; Abreu, H.; Acinas, S. G.; Allen, E.; Allen, M. A.; Alteio, L. V.; Andersen, G.; Anesio, A. M.; Attwood, G.; Avila-Magaña, V.; Badis, Y.; Bailey, J.; Baker, B.; Baldrian, P.; Barton, H. A.; Beck, D. A. C.; Becraft, E. D.; Beller, H. R.; Beman, J. M.; Bernier-Latmani, R.; Berry, T. D.; Bertagnolli, A.; Bertilsson, S.; Bhatnagar, J. M.; Bird, J. T.; Blanchard, J. L.; Blumer-Schuette, S. E.; Bohannan, B.; Borton, M. A.; Brady, A.; Brawley, S. H.; Brodie, J.; Brown, S.; Brum, J. R.; Brune, A.; Bryant, D. A.; Buchan, A.; Buckley, D. H.; Buongiorno, J.; Cadillo-Quiroz, H.; Caffrey, S. M.; Campbell, A. N.; Campbell, B.; Carr, S.; Carroll, J. L.; Cary, S. C.; Cates, A. M.; Cattolico, R. A.; Cavicchioli, R.; Chistoserdova, L.; Coleman, M. L.; Constant, P.; Conway, J. M.; Mac Cormack, W. P.; Crowe, S.; Crump, B.; Currie, C.; Daly, R.; DeAngelis, K. M.; Denef, V.; Denman, S. E.; Desta, A.; Dionisi, H.; Dodsworth, J.; Dombrowski, N.; Donohue, T.; Dopson, M.; Driscoll, T.; Dunfield, P.; Dupont, C. L.; Dynarski, K. A.; Edgcomb, V.; Edwards, E. A.; Elshahed, M. S.; Figueroa, I.; Flood, B.; Fortney, N.; Fortunato, C. S.; Francis, C.; Gachon, C. M. M.; Garcia, S. L.; Gazitua, M. C.; Gentry, T.; Gerwick, L.; Gharechahi, J.; Girguis, P.; Gladden, J.; Gradoville, M.; Grasby, S. E.; Gravuer, K.; Grettenberger, C. L.; Gruninger, R. J.; Guo, J.; Habteselassie, M. Y.; Hallam, S. J.; Hatzenpichler, R.; Hausmann, B.; Hazen, T. C.; Hedlund, B.; Henny, C.; Herfort, L.; Hernandez, M.; Hershey, O. S.; Hess, M.; Hollister, E. B.; Hug, L. A.; Hunt, D.; Jansson, J.; Jarett, J.; Kadnikov, V. V.; Kelly, C.; Kelly, R.; Kelly, W.; Kerfeld, C. A.; Kimbrel, J.; Klassen, J. L.; Konstantinidis, K. T.; Lee, L. L.; Li, W. J.; Loder, A. J.; Loy, A.; Lozada, M.; MacGregor, B.; Magnabosco, C.; Maria da Silva, A.; McKay, R. M.; McMahon, K.; McSweeney, C. S.; Medina, M.; Meredith, L.; Mizzi, J.; Mock, T.; Momper, L.; Moran, M. A.; Morgan-Lang, C.; Moser, D.; Muyzer, G.; Myrold, D.; Nash, M.; Nesbø, C. L.; Neumann, A. P.; Neumann, R. B.; Noguera, D.; Northen, T.; Norton, J.; Nowinski, B.; Nüsslein, K.; O’Malley, M. A.; Oliveira, R. S.; Maia de Oliveira, V.; Onstott, T.; Osvatic, J.; Ouyang, Y.; Pachiadaki, M.; Parnell, J.; Partida-Martinez, L. P.; Peay, K. G.; Pelletier, D.; Peng, X.; Pester, M.; Pett-Ridge, J.; Peura, S.; Pjevac, P.; Plominsky, A. M.; Poehlein, A.; Pope, P. B.; Ravin, N.; Redmond, M. C.; Reiss, R.; Rich, V.; Rinke, C.; Rodrigues, J. L. M.; Rodriguez-Reillo, W.; Rossmassler, K.; Sackett, J.; Salekdeh, G. H.; Saleska, S.; Scarborough, M.; Schachtman, D.; Schadt, C. W.; Schrenk, M.; Sczyrba, A.; Sengupta, A.; Setubal, J. C.; Shade, A.; Sharp, C.; Sherman, D. H.; Shubenkova, O. V.; Sierra-Garcia, I. N.; Simister, R.; Simon, H.; Sjöling, S.; Slonczewski, J.; Correa de Souza, R. S.; Spear, J. R.; Stegen, J. C.; Stepanauskas, R.; Stewart, F.; Suen, G.; Sullivan, M.; Sumner, D.; Swan, B. K.; Swingley, W.; Tarn, J.; Taylor, G. T.; Teeling, H.; Tekere, M.; Teske, A.; Thomas, T.; Thrash, C.; Tiedje, J.; Ting, C. S.; Tully, B.; Tyson, G.; Ulloa, O.; Valentine, D. L.; Van Goethem, M. W.; VanderGheynst, J.; Verbeke, T. J.; Vollmers, J.; Vuillemin, A.; Waldo, N. B.; Walsh, D. A.; Weimer, B. C.; Whitman, T.; van der Wielen, P.; Wilkins, M.; Williams, T. J.; Woodcroft, B.; Woolet, J.; Wrighton, K.; Ye, J.; Young, E. B.; Youssef, N. H.; Yu, F. B.; Zemskaya, T. I.; Ziels, R.; Woyke, T.; Mouncey, N. J.; Ivanova, N. N.; Kyrpides, N. C.; Eloe-Fadrosh, E. A., A genomic catalog of Earth’s microbiomes. Nat. Biotechnol. 2021, 39 (4), 499-509. https://doi.org/10.1038/s41587-020-0718-6

915Nouraei, M.; Collymore, C.; Diosady, L.; Acosta, E., HLD-NAC design and evaluation of a fully dilutable lecithin-linker SMEDDS for ibuprofen. Int J Pharm 2021, 610, 121237. https://doi.org/10.1016/j.ijpharm.2021.121237

916Pandit, A. V.; Harrison, E.; Mahadevan, R., Engineering Escherichia coli for the utilization of ethylene glycol. Microbial Cell Factories 2021, 20 (1), 22. https://doi.org/10.1186/s12934-021-01509-2

917Paraskevopoulos, M.; McGuigan, A. P., Application of CRISPR screens to investigate mammalian cell competition. Brief. Funct. Genomics 2021, 20 (3), 135-147. https://doi.org/10.1093/bfgp/elab020

918Pieters, V. M.; Co, I. L.; Wu, N. C.; McGuigan, A. P., Applications of Omics Technologies for Three-Dimensional in Vitro Disease Models. Tissue Eng. Part. C Methods 2021, 27 (3), 183-199. https://doi.org/10.1089/ten.tec.2020.0300

919Raj, K.; Venayak, N.; Diep, P.; Golla, S. A.; Yakunin, A. F.; Mahadevan, R., Automation assisted anaerobic phenotyping for metabolic engineering. Microb Cell Fact 2021, 20 (1), 184. https://doi.org/10.1186/s12934-021-01675-3

920Raji, O.; Arnling Bååth, J.; Vuong, T. V.; Larsbrink, J.; Olsson, L.; Master, E. R., The coordinated action of glucuronoyl esterase and α-glucuronidase promotes the disassembly of lignin–carbohydrate complexes. FEBS Lett. 2021, 595 (3), 351-359. https://doi.org/10.1002/1873-3468.14019

921Saffarionpour, S.; Diosady, L. L., Multiple Emulsions for Enhanced Delivery of Vitamins and Iron Micronutrients and Their Application for Food Fortification. Food and Bioprocess Technology 2021, 14 (4), 587-625. https://doi.org/10.1007/s11947-021-02586-2

922Saffarionpour, S.; Diosady, L. L., Preparation of iron-loaded water-in-oil-in-water (W1/O/W2) double emulsions: optimization using response surface methodology. J. Dispersion Sci. Technol. 2021, 1-10. https://doi.org/10.1080/01932691.2021.2008422

923Schneider, P.; Mahadevan, R.; Klamt, S., Systematizing the different notions of growth-coupled product synthesis and a single framework for computing corresponding strain designs. Biotechnol. J. 2021, 16 (12), e2100236. https://doi.org/10.1002/biot.202100236

924Soleas, J. P.; Huang, L.; D’Arcangelo, E.; Nostro, M. C.; Waddell, T. K.; McGuigan, A. P.; Karoubi, G., Guided Self-Assembly of ES-Derived Lung Progenitors into Biomimetic Tube Structures That Impact Cell Differentiation. Bioengineering 2021, 8 (12), 209. https://doi.org/10.3390/bioengineering8120209

925Stephens, S.; Mahadevan, R.; Allen, D. G., Engineering Photosynthetic Bioprocesses for Sustainable Chemical Production: A Review. Frontiers in Bioengineering and Biotechnology 2021, 8. https://doi.org/10.3389/fbioe.2020.610723

926Vatandoust, A.; Mannar, M. G. V.; Diosady, L. L., Organoleptic Effects of Salt Fortification with Iron and Iodine: A Review. J. Nutr. 2021, 151 (7), 1690-1702. https://doi.org/10.1093/jn/nxab078

927Vuong, T. V.; Singh, R.; Eltis, L. D.; Master, E. R., The Comparative Abilities of a Small Laccase and a Dye-Decoloring Peroxidase From the Same Bacterium to Transform Natural and Technical Lignins. Front. Microbiol. 2021, 12, 723524. https://doi.org/10.3389/fmicb.2021.723524

928Wu, B.; Gaskell, J.; Held, B. W.; Toapanta, C.; Vuong, T. V.; Ahrendt, S.; Lipzen, A.; Zhang, J.; Schilling, J. S.; Master, E.; Grigoriev, I. V.; Blanchette, R. A.; Cullen, D.; Hibbett, D. S., Retracted and Republished from: "Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola". Appl Environ Microbiol 2021, 87 (16), e0032921. https://doi.org/10.1128/aem.00329-21

929Yan, R.; Wang, W.; Vuong, T. V.; Xiu, Y.; Skarina, T.; Di Leo, R.; Gatenholm, P.; Toriz, G.; Tenkanen, M.; Stogios, P. J.; Master, E. R., Structural characterization of the family GH115 α-glucuronidase from Amphibacillus xylanus yields insight into its coordinated action with α-arabinofuranosidases. N. Biotechnol. 2021, 62, 49-56. https://doi.org/10.1016/j.nbt.2021.01.005

930Zhu, L.; Pei, W.; DiCiano, P.; Brands, B.; Wickens, C. M.; Foll, B. L.; Kwong, B.; Parashar, M.; Sivananthan, A.; Mahadevan, R., Physiologically-based pharmacokinetic model for predicting blood and tissue tetrahydrocannabinol concentrations. Comput. Chem. Eng. 2021, 154, 107461. https://doi.org/https://doi.org/10.1016/j.compchemeng.2021.107461

931Zhu, L.; Pei, W.; Thiele, I.; Mahadevan, R., Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism. PLoS Comput. Biol. 2021, 17 (8), e1009110. https://doi.org/10.1371/journal.pcbi.1009110

932Arefmanesh, M.; Nikafshar, S.; Master, E. R.; Nejad, M., From acetone fractionation to lignin-based phenolic and polyurethane resins. Industrial Crops and Products 2022, 178, 114604. https://doi.org/https://doi.org/10.1016/j.indcrop.2022.114604

933Arefmanesh, M.; Vuong, T. V.; Nikafshar, S.; Wallmo, H.; Nejad, M.; Master, E. R., Enzymatic synthesis of kraft lignin-acrylate copolymers using an alkaline tolerant laccase. Applied Microbiology and Biotechnology 2022, 106 (8), 2969-2979. https://doi.org/10.1007/s00253-022-11916-z

934Arellano-Saab, A.; McErlean, C. S. P.; Lumba, S.; Savchenko, A.; Stogios, P. J.; McCourt, P., A novel strigolactone receptor antagonist provides insights into the structural inhibition, conditioning, and germination of the crop parasite Striga. J. Biol. Chem. 2022, 298 (4), 101734. https://doi.org/10.1016/j.jbc.2022.101734

935Cadavid, J. L.; Latour, S.; Nowlan, F.; Co, I. L.; Landon-Brace, N.; Wouters, B. G.; Grünwald, B. T.; Nitz, M.; Jackson, H. W.; McGuigan, A. P., An Engineered Paper-Based 3D Coculture Model of Pancreatic Cancer to Study the Impact of Tissue Architecture and Microenvironmental Gradients on Cell Phenotype. Advanced Healthcare Materials 2022, n/a (n/a), 2201846. https://doi.org/https://doi.org/10.1002/adhm.202201846

936Chan, P. W. Y.; Chakrabarti, N.; Ing, C.; Halgas, O.; To, T. K. W.; Wälti, M.; Petit, A.-P.; Tran, C.; Savchenko, A.; Yakunin, A. F.; Edwards, E. A.; Pomès, R.; Pai, E. F., Defluorination Capability of l-2-Haloacid Dehalogenases in the HAD-Like Hydrolase Superfamily Correlates with Active Site Compactness. ChemBioChem 2022, 23 (1), e202100414. https://doi.org/https://doi.org/10.1002/cbic.202100414

937Chen, J.; Liu, Y.; Diep, P.; Mahadevan, R., Genetic engineering of extremely acidophilic Acidithiobacillus species for biomining: Progress and perspectives. J. Hazard. Mater. 2022, 438, 129456. https://doi.org/10.1016/j.jhazmat.2022.129456

938Chen, J.; Liu, Y.; Diep, P.; Mahadevan, R., Harnessing synthetic biology for sustainable biomining with Fe/S-oxidizing microbes. Front Bioeng Biotechnol 2022, 10, 920639. https://doi.org/10.3389/fbioe.2022.920639

939Cheung, S. L.; Short, S. M.; Allen, D. G., The influence of wastewater pretreatment, attachment material, and inoculation strategy on the growth of target algal species in cultivated biofilms. J. Appl. Phycol. 2022, 34 (1), 113-125. https://doi.org/10.1007/s10811-021-02637-3

940Cruz, M. R.; Cristy, S.; Guha, S.; De Cesare, G. B.; Evdokimova, E.; Sanchez, H.; Borek, D.; Miramón, P.; Yano, J.; Fidel, P. L., Jr.; Savchenko, A.; Andes, D. R.; Stogios, P. J.; Lorenz, M. C.; Garsin, D. A., Structural and functional analysis of EntV reveals a 12 amino acid fragment protective against fungal infections. Nat Commun 2022, 13 (1), 6047. https://doi.org/10.1038/s41467-022-33613-1

941D'Aoust, P. M.; Tian, X.; Towhid, S. T.; Xiao, A.; Mercier, E.; Hegazy, N.; Jia, J. J.; Wan, S.; Kabir, M. P.; Fang, W.; Fuzzen, M.; Hasing, M.; Yang, M. I.; Sun, J.; Plaza-Diaz, J.; Zhang, Z.; Cowan, A.; Eid, W.; Stephenson, S.; Servos, M. R.; Wade, M. J.; MacKenzie, A. E.; Peng, H.; Edwards, E. A.; Pang, X. L.; Alm, E. J.; Graber, T. E.; Delatolla, R., Wastewater to clinical case (WC) ratio of COVID-19 identifies insufficient clinical testing, onset of new variants of concern and population immunity in urban communities. Sci. Total Environ. 2022, 853, 158547. https://doi.org/10.1016/j.scitotenv.2022.158547

942Davoudi, S.; Xu, B.; Jacques, E.; Cadavid, J. L.; McFee, M.; Chin, C.-Y.; Meysami, A.; Ebrahimi, M.; Bakooshli, M. A.; Tung, K.; Ahn, H.; Ginsberg, H. J.; McGuigan, A. P.; Gilbert, P. M., MEndR: An In Vitro Functional Assay to Predict In Vivo Muscle Stem Cell-Mediated Repair. Adv. Funct. Mater. 2022, 32 (2), 2106548. https://doi.org/https://doi.org/10.1002/adfm.202106548

943Diep, P.; Cadavid, J. L.; Yakunin, A. F.; McGuigan, A. P.; Mahadevan, R., REVOLVER: A low-cost automated protein purifier based on parallel preparative gravity column workflows. HardwareX 2022, 11, e00291. https://doi.org/10.1016/j.ohx.2022.e00291

944Du Bois, A. C.; Xue, A.; Pham, C.; Revie, N. M.; Meyer, K. J.; Yashiroda, Y.; Boone, C.; Nodwell, J. R.; Stogios, P.; Savchenko, A.; Robbins, N.; Iyer, K. R.; Cowen, L. E., High-Throughput Chemical Screen Identifies a 2,5-Disubstituted Pyridine as an Inhibitor of Candida albicans Erg11. mSphere 2022, 7 (3), e0007522. https://doi.org/10.1128/msphere.00075-22

945Euler, C.; Mahadevan, R., On the design principles of metabolic flux sensing. Biophys. J. 2022, 121 (2), 237-247. https://doi.org/10.1016/j.bpj.2021.12.022

946Gonçalves, M. C. P.; Romanelli, J. P.; Cansian, A. B. M.; Pucci, E. F. Q.; Guimarães, J. R.; Tardioli, P. W.; Saville, B. A., A review on the production and recovery of sugars from lignocellulosics for use in the synthesis of bioproducts. Industrial Crops and Products 2022, 186, 115213. https://doi.org/https://doi.org/10.1016/j.indcrop.2022.115213

947Guo, S.; Toth, C. R. A.; Luo, F.; Chen, X.; Xiao, J.; Edwards, E. A., Transient Oxygen Exposure Causes Profound and Lasting Changes to a Benzene-Degrading Methanogenic Community. Environ Sci Technol 2022, 56 (18), 13036-13045. https://doi.org/10.1021/acs.est.2c02624

948Haas, D.; Thamm, A. M.; Sun, J.; Huang, L.; Sun, L.; Beaudoin, G. A. W.; Wise, K. S.; Lerma-Ortiz, C.; Bruner, S. D.; Breuer, M.; Luthey-Schulten, Z.; Lin, J.; Wilson, M. A.; Brown, G.; Yakunin, A. F.; Kurilyak, I.; Folz, J.; Fiehn, O.; Glass, J. I.; Hanson, A. D.; Henry, C. S.; de Crécy-Lagard, V., Metabolite Damage and Damage Control in a Minimal Genome. mBio 2022, 13 (4), e0163022. https://doi.org/10.1128/mbio.01630-22

949Haddadi, K.; Ahmed Barghout, R.; Mahadevan, R., KinMod database: a tool for investigating metabolic regulation. Database (Oxford) 2022, 2022. https://doi.org/10.1093/database/baac081

950Hayes, A. C.; Nesbø, C.; Edwards, E. A.; Jenson, E., Anaerobic Digestion of Kraft Pulp Mill Foul Condensate Under Thermophilic and Mesophilic Conditions. Environ. Eng. Sci. 2022, 39 (6), 573-583. https://doi.org/10.1089/ees.2021.0183

951Hezaveh, K.; Shinde, R. S.; Klötgen, A.; Halaby, M. J.; Lamorte, S.; Ciudad, M. T.; Quevedo, R.; Neufeld, L.; Liu, Z. Q.; Jin, R.; Grünwald, B. T.; Foerster, E. G.; Chaharlangi, D.; Guo, M.; Makhijani, P.; Zhang, X.; Pugh, T. J.; Pinto, D. M.; Co, I. L.; McGuigan, A. P.; Jang, G. H.; Khokha, R.; Ohashi, P. S.; O'Kane, G. M.; Gallinger, S.; Navarre, W. W.; Maughan, H.; Philpott, D. J.; Brooks, D. G.; McGaha, T. L., Tryptophan-derived microbial metabolites activate the aryl hydrocarbon receptor in tumor-associated macrophages to suppress anti-tumor immunity. Immunity 2022, 55 (2), 324-340.e8. https://doi.org/10.1016/j.immuni.2022.01.006

952Li, J.; Goddard-Borger, E. D.; Raji, O.; Saxena, H.; Solhi, L.; Mathieu, Y.; Master, E. R.; Wakarchuk, W. W.; Brumer, H., Chitin-Active Lytic Polysaccharide Monooxygenases Are Rare in Cellulomonas Species. Appl Environ Microbiol 2022, 88 (15), e0096822. https://doi.org/10.1128/aem.00968-22

953Li, N. T.; Wu, N. C.; Cao, R.; Cadavid, J. L.; Latour, S.; Lu, X.; Zhu, Y.; Mijalkovic, M.; Roozitalab, R.; Landon-Brace, N.; Notta, F.; McGuigan, A. P., An off-the-shelf multi-well scaffold-supported platform for tumour organoid-based tissues. Biomaterials 2022, 291, 121883. https://doi.org/10.1016/j.biomaterials.2022.121883

954Liu, Y.; Khusnutdinova, A.; Chen, J.; Crisante, D.; Batyrova, K.; Raj, K.; Feigis, M.; Shirzadi, E.; Wang, X.; Dorakhan, R.; Wang, X.; Stogios, P. J.; Yakunin, A. F.; Sargent, E. H.; Mahadevan, R., Systems engineering of Escherichia coli for n-butane production. Metab. Eng. 2022, 74, 98-107. https://doi.org/10.1016/j.ymben.2022.10.001

955Mahmoud, A.; Bilton, A.; Huang, M.; Diosady, L.; Cheng, Y. L., Mobilizing higher education and research toward engineering for global development: The approach taken by the Centre for Global Engineering. In Handbook of Innovation & Appropriate Technologies for International Development, Edward Elgar Publishing Ltd.: 2022; pp 103-124.

956Manchel, A.; Hoek, J. B.; Bataller, R.; Mahadevan, R.; Vadigepalli, R., Patient-Specific Genome-Scale Metabolic Models for Individualized Predictions of Liver Disease. IFAC-PapersOnLine 2022, 55 (23), 148-149. https://doi.org/https://doi.org/10.1016/j.ifacol.2023.01.032

957Manchel, A.; Mahadevan, R.; Bataller, R.; Hoek, J. B.; Vadigepalli, R., Genome-Scale Metabolic Modeling Reveals Sequential Dysregulation of Glutathione Metabolism in Livers from Patients with Alcoholic Hepatitis. Metabolites 2022, 12 (12). https://doi.org/10.3390/metabo12121157

958Modupe, O.; Krishnaswamy, K.; Siddiqui, J.; Li, Y. O.; Diosady, L. L., Development and scale-up of microencapsulation-based technology for multimicronutrient fortification of salt. In Microencapsulation in the Food Industry: A Practical Implementation Guide, Elsevier: 2022; pp 529-553. https://doi.org/10.1016/B978-0-12-821683-5.00012-1

959Modupe, O.; Li, Y. O.; Diosady, L. L., Optimization of the color masking and coating unit operations for microencapsulating ferrous fumarate for double fortification of salt. J. Food Sci. Technol. 2022, 59 (8), 3120-3129. https://doi.org/10.1007/s13197-022-05426-z

960Monschein, M.; Jurak, E.; Paasela, T.; Koitto, T.; Lambauer, V.; Pavicic, M.; Enjalbert, T.; Dumon, C.; Master, E. R., PACER: a novel 3D plant cell wall model for the analysis of non-catalytic and enzymatic responses. Biotechnol Biofuels Bioprod 2022, 15 (1), 30. https://doi.org/10.1186/s13068-022-02128-8

961Nouri, S.; Holcroft, J.; Caruso, L. L.; Vuong, T. V.; Simmons, C. A.; Master, E. R.; Ganss, B., An SCPPPQ1/LAM332 protein complex enhances the adhesion and migration of oral epithelial cells: Implications for dentogingival regeneration. Acta Biomater. 2022, 147, 209-220. https://doi.org/10.1016/j.actbio.2022.05.035

962Peng, J.; Sun, J.; Yang, M. I.; Gibson, R. M.; Arts, E. J.; Olabode, A. S.; Poon, A. F. Y.; Wang, X.; Wheeler, A. R.; Edwards, E. A.; Peng, H., Early Warning Measurement of SARS-CoV-2 Variants of Concern in Wastewaters by Mass Spectrometry. Environmental Science & Technology Letters 2022, 9 (7), 638-644. https://doi.org/10.1021/acs.estlett.2c00280

963Penttinen, L.; Kouhi, V.; Fauré, R.; Skarina, T.; Stogios, P.; Master, E.; Jurak, E., Elucidating Sequence and Structural Determinants of Carbohydrate Esterases for Complete Deacetylation of Substituted Xylans. Molecules 2022, 27 (9), 2655. https://doi.org/10.3390/molecules27092655

964Peter, J. S.; Sean, D. L.; Cameron, S.; Bradley, Q.; Karolina, M.; Elena, E.; Shane, R.; Zbyszek, O.; Dominika, B.; Leah, E. C.; Alexei, S., Molecular analysis and essentiality of Aro1 shikimate biosynthesis multi-enzyme in Candida albicans. Life Science Alliance 2022, 5 (8), e202101358. https://doi.org/10.26508/lsa.202101358

965Pham, C.; Stogios, P. J.; Savchenko, A.; Mahadevan, R., Advances in engineering and optimization of transcription factor-based biosensors for plug-and-play small molecule detection. Curr. Opin. Biotechnol. 2022, 76, 102753. https://doi.org/10.1016/j.copbio.2022.102753

966Phillips, E.; Bergquist, B. A.; Chartrand, M. M. G.; Chen, W.; Edwards, E. A.; Elsner, M.; Gilevska, T.; Hirschorn, S.; Horst, A.; Lacrampe-Couloume, G.; Mancini, S. A.; McKelvie, J.; Morrill, P. L.; Ojeda, A. S.; Slater, G. F.; Sleep, B. E.; De Vera, J.; Warr, O.; Passeport, E., Compound specific isotope analysis in hydrogeology. Journal of Hydrology 2022, 615, 128588. https://doi.org/https://doi.org/10.1016/j.jhydrol.2022.128588

967Phillips, E.; Bulka, O.; Picott, K.; Kümmel, S.; Edwards, E. A.; Nijenhuis, I.; Gehre, M.; Dworatzek, S.; Webb, J.; Sherwood Lollar, B., Investigation of active site amino acid influence on carbon and chlorine isotope fractionation during reductive dechlorination. FEMS Microbiol. Ecol. 2022, 98 (8). https://doi.org/10.1093/femsec/fiac072

968Picott, K. J.; Flick, R.; Edwards, E. A., Heterologous Expression of Active Dehalobacter Respiratory Reductive Dehalogenases in Escherichia coli. Appl Environ Microbiol 2022, 88 (3), e0199321. https://doi.org/10.1128/aem.01993-21

969Pieters, V. M.; Rjaibi, S. T.; Singh, K.; Li, N. T.; Khan, S. T.; Nunes, S. S.; Dal Cin, A.; Gilbert, P. M.; McGuigan, A. P., A three-dimensional human adipocyte model of fatty acid-induced obesity. Biofabrication 2022, 14 (4), 045009. https://doi.org/10.1088/1758-5090/ac84b1

970Pileggi, V.; Shurgold, J.; Sun, J. S.; Yang, M. I.; Edwards, E. A.; Peng, H.; Tehrani, A.; Gilbride, K. A.; Oswald, C. J.; Wijayasri, S.; Al-Bargash, D.; Stuart, R.; Khansari, Z.; Raby, M.; Thomas, J.; Fletcher, T.; Simhon, A., Quantitative Trend Analysis of SARS-CoV-2 RNA in Municipal Wastewater Exemplified with Sewershed-Specific COVID-19 Clinical Case Counts. ACS ES&T Water 2022, 2 (11), 2070-2083. https://doi.org/10.1021/acsestwater.2c00058

971Prince, E.; Cruickshank, J.; Ba-Alawi, W.; Hodgson, K.; Haight, J.; Tobin, C.; Wakeman, A.; Avoulov, A.; Topolskaia, V.; Elliott, M. J.; McGuigan, A. P.; Berman, H. K.; Haibe-Kains, B.; Cescon, D. W.; Kumacheva, E., Biomimetic hydrogel supports initiation and growth of patient-derived breast tumor organoids. Nat Commun 2022, 13 (1), 1466. https://doi.org/10.1038/s41467-022-28788-6

972Prince, E.; Kheiri, S.; Wang, Y.; Xu, F.; Cruickshank, J.; Topolskaia, V.; Tao, H.; Young, E. W. K.; McGuigan, A. P.; Cescon, D. W.; Kumacheva, E., Microfluidic Arrays of Breast Tumor Spheroids for Drug Screening and Personalized Cancer Therapies. Advanced Healthcare Materials 2022, 11 (1), 2101085. https://doi.org/https://doi.org/10.1002/adhm.202101085

973Puri, S.; Rekhi, T. K.; Thomas, T.; Jadhav, M. H.; Mannar, V.; Diosady, L. L., Sensory Trial of Quintuple Fortified Salt-Salt Fortified With Iodine, Iron, Folic Acid, Vitamin B(12), and Zinc-Among Consumers in New Delhi, India. Food Nutr. Bull. 2022, 43 (3), 340-350. https://doi.org/10.1177/03795721221078361

974Qiao, W.; Liu, G.; Li, M.; Su, X.; Lu, L.; Ye, S.; Wu, J.; Edwards, E. A.; Jiang, J., Complete Reductive Dechlorination of 4-Hydroxy-chlorothalonil by Dehalogenimonas Populations. Environ Sci Technol 2022, 56 (17), 12237-12246. https://doi.org/10.1021/acs.est.2c02574

975Sabat, G.; Ahrendt, S.; Wu, B.; Gaskell, J.; Held, B. W.; Toapanta, C.; Vuong, T. V.; Lipzen, A.; Zhang, J.; Schilling, J. S.; Master, E.; Grigoriev, I. V.; Blanchette, R. A.; Hibbett, D. S.; Bhatnagar, J.; Cullen, D., Proteome of the Wood Decay Fungus Fomitopsis pinicola Is Altered by Substrate. Microbiol Resour Announc 2022, 11 (9), e0058622. https://doi.org/10.1128/mra.00586-22

976Saffarionpour, S.; Diosady, L. L., Delivery of Ferric Sodium EDTA by Water-in-Oil-in-Water (W1/O/W2) Double Emulsions: Influence of Carrier Oil on its in Vitro Bioaccessibility. Food and Bioprocess Technology 2022, 15 (2), 421-439. https://doi.org/10.1007/s11947-021-02756-2

977Saffarionpour, S.; Diosady, L. L., Delivery of curcumin through colloidal systems and its applications in functional foods. Current Opinion in Food Science 2022, 43, 155-162. https://doi.org/https://doi.org/10.1016/j.cofs.2021.12.003

978Saffarionpour, S.; Diosady, L. L., The influence of iron source, hydrophilic emulsifiers, and positioning of encapsulates on in vitro bioaccessibility and simultaneous delivery of iron and curcumin by water-in-oil-in-water (W1/O/W2) double emulsions. Journal of Food Measurement and Characterization 2022, 1-22. https://doi.org/10.1007/s11694-022-01691-w

979Saffarionpour, S.; Diosady, L. L., Curcumin, a potent therapeutic nutraceutical and its enhanced delivery and bioaccessibility by pickering emulsions. Drug Deliv Transl Res 2022, 12 (1), 124-157. https://doi.org/10.1007/s13346-021-00936-3

980Scarborough, M. J.; Lawson, C. E.; DeCola, A. C.; Gois, I. M., Microbiomes for sustainable biomanufacturing. Curr. Opin. Microbiol. 2022, 65, 8-14. https://doi.org/10.1016/j.mib.2021.09.015

981Siddiqui, J.; Modupe, O.; Vatandoust, A.; Diosady, L. L., Predicting the Stability of Double Fortified Salt by Determining the Coating Quality of the Encapsulated Iron Premix. J. Food Qual. 2022, 2022, 7812022. https://doi.org/10.1155/2022/7812022

982Sonawane, J. M.; Mahadevan, R.; Pandey, A.; Greener, J., Recent progress in microbial fuel cells using substrates from diverse sources. Heliyon 2022, 8 (12), e12353. https://doi.org/10.1016/j.heliyon.2022.e12353

983Stogios, P. J.; Bordeleau, E.; Xu, Z.; Skarina, T.; Evdokimova, E.; Chou, S.; Diorio-Toth, L.; D'Souza, A. W.; Patel, S.; Dantas, G.; Wright, G. D.; Savchenko, A., Structural and molecular rationale for the diversification of resistance mediated by the Antibiotic_NAT family. Commun Biol 2022, 5 (1), 263. https://doi.org/10.1038/s42003-022-03219-w

984Turner, M.; Saville, B., Technoeconomic evaluation of protein-rich animal feed and ethanol production from palm kernel cake. Biofuels, Bioproducts and Biorefining 2022, 16 (1), 105-121. https://doi.org/10.1002/bbb.2259

985Varma, R.; Poon, J.; Liao, Z.; Aitchison, J. S.; Waddell, T. K.; Karoubi, G.; McGuigan, A. P., Planar organization of airway epithelial cell morphology using hydrogel grooves during ciliogenesis fails to induce ciliary alignment. Biomaterials Science 2022, 10 (2), 396-409. https://doi.org/10.1039/d1bm01327k

986Vatandoust, A.; Diosady, L., Iron compounds and their organoleptic properties in salt fortification with iron and iodine: an overview. Current Opinion in Food Science 2022, 43, 232-236. https://doi.org/https://doi.org/10.1016/j.cofs.2021.12.007

987Venkatesan, M.; Semper, C.; Skrivergaard, S.; Di Leo, R.; Mesa, N.; Rasmussen, M. K.; Young, J. F.; Therkildsen, M.; Stogios, P. J.; Savchenko, A., Recombinant production of growth factors for application in cell culture. iScience 2022, 25 (10), 105054. https://doi.org/10.1016/j.isci.2022.105054

988Vuong, T. V.; Master, E. R., Enzymatic upgrading of heteroxylans for added-value chemicals and polymers. Curr. Opin. Biotechnol. 2022, 73, 51-60. https://doi.org/10.1016/j.copbio.2021.07.001

989Wu, N. C.; Cadavid, J. L.; Tan, X.; Latour, S.; Scaini, S.; Makhijani, P.; McGaha, T. L.; Ailles, L.; McGuigan, A. P., 3D microgels to quantify tumor cell properties and therapy response dynamics. Biomaterials 2022, 283, 121417. https://doi.org/10.1016/j.biomaterials.2022.121417

990Xu, Z.; Mahadevan, R., Efficient Enumeration of Branched Novel Biochemical Pathways Using a Probabilistic Technique. Ind. Eng. Chem. Res. 2022, 61 (25), 8645-8657. https://doi.org/10.1021/acs.iecr.1c02211

991Yi, S.; Morson, N.; Edwards, E. A.; Yang, D.; Liu, R.; Zhu, L.; Mabury, S. A., Anaerobic Microbial Dechlorination of 6:2 Chlorinated Polyfluorooctane Ether Sulfonate and the Underlying Mechanisms. Environ. Sci. Technol. 2022, 56 (2), 907-916. https://doi.org/10.1021/acs.est.1c05475

992Zhang, X.; Kushner, P. J.; Saville, B. A.; Posen, I. D., Cold Temperature Limits to Biodiesel Use under Present and Future Climates in North America. Environ. Sci. Technol. 2022, 56 (12), 8640-8649. https://doi.org/10.1021/acs.est.2c01699

993Zhao, H.; Karppi, J.; Nguyen, T. T. M.; Bellemare, A.; Tsang, A.; Master, E.; Tenkanen, M., Characterization of a novel AA3_1 xylooligosaccharide dehydrogenase from Thermothelomyces myriococcoides CBS 398.93. Biotechnol Biofuels Bioprod 2022, 15 (1), 135. https://doi.org/10.1186/s13068-022-02231-w

994Ghazisaidi, H.; Tran, H.; Meyer, T.; Allen, D. G., Enhancement of biosludge dewatering using proteins through dual conditioning. The Canadian Journal of Chemical Engineering 2023, 101 (6), 3226-3233. https://doi.org/https://doi.org/10.1002/cjce.24705

995Ghazisaidi, H.; Wang, V.; Fatehi, P.; Tran, H.; Meyer, T.; Allen, D. G., Determining the performance of lignin-based flocculants in improving biosludge dewaterability. J. Environ. Manage. 2023, 325. https://doi.org/10.1016/j.jenvman.2022.116509

996Mdoe, P.; Mannar, V.; Paulo, B.; Guga, G.; Mushi, C.; Kimathi, C.; Paschal, J.; Jatosh, S.; Assey, V.; Abdallah, F.; Mduma, E.; Diosady, L., Multiple micronutrients fortified salt: consumers’ acceptability survey, Tanzania. BMC Public Health 2023, 23 (1), 73. https://doi.org/10.1186/s12889-023-15000-7

997Venkatesan, M.; Fruci, M.; Verellen, L. A.; Skarina, T.; Mesa, N.; Flick, R.; Pham, C.; Mahadevan, R.; Stogios, P. J.; Savchenko, A., Molecular mechanism of plasmid-borne resistance to sulfonamide antibiotics. Nat Commun 2023, 14 (1), 4031. https://doi.org/10.1038/s41467-023-39778-7

998Yan, S.; Cheng, K. Y.; Bohu, T.; Morris, C.; Lomheim, L.; Yang, I.; Ginige, M. P.; Edwards, E.; Zheng, G.; Zhou, L.; Kaksonen, A. H., Microbial community dynamics in a feedback-redox controlled bioreactor process that enabled sequential selenate, nitrate and sulfate removal, and elemental selenium recovery. Journal of Water Process Engineering 2023, 54, 103881. https://doi.org/https://doi.org/10.1016/j.jwpe.2023.103881

999de Oliveira, R. D.; Le Roux, G. A. C.; Mahadevan, R., Nonlinear programming reformulation of dynamic flux balance analysis models. Comput. Chem. Eng. 2023, 170, 108101. https://doi.org/https://doi.org/10.1016/j.compchemeng.2022.108101

1000Liu, Y.; Chen, J.; Raj, K.; Baerg, L.; Nathan, N.; Philpott, D. J.; Mahadevan, R., A Universal Strategy to Promote Secretion of G+/G- Bacterial Extracellular Vesicles and Its Application in Host Innate Immune Responses. ACS Synthetic Biology 2023, 12 (1), 319-328. https://doi.org/10.1021/acssynbio.2c00583

1001Derba-Maceluch, M.; Mitra, M.; Hedenström, M.; Liu, X.; Gandla, M. L.; Barbut, F. R.; Abreu, I. N.; Donev, E. N.; Urbancsok, J.; Moritz, T.; Jönsson, L. J.; Tsang, A.; Powlowski, J.; Master, E. R.; Mellerowicz, E. J., Xylan glucuronic acid side chains fix suberin-like aliphatic compounds to wood cell walls. New Phytol. 2023, 238 (1), 297-312. https://doi.org/10.1111/nph.18712

1002Khan, S.; Shoaib, M.; Molaei, N.; Wani, O. B.; Chen, Z.; Vuong, T. V.; Roth, E. W.; Fiddes, L. K.; Kuzmenko, I.; Master, E. R.; Bobicki, E. R., Cellulose Nanocrystals’ Role in Critical Mineral Beneficiation: Dual Aggregate-Dispersant Behavior Supports Environmentally Benign Nickel Processing. ACS Sustainable Chem. Eng. 2023, 11 (4), 1294-1304. https://doi.org/10.1021/acssuschemeng.2c05923

1003Monschein, M.; Ioannou, E.; Koitto, T.; Al Amin, L.; Varis, J. J.; Wagner, E. R.; Mikkonen, K. S.; Cosgrove, D. J.; Master, E. R., Loosenin-Like Proteins from Phanerochaete carnosa Impact Both Cellulose and Chitin Fiber Networks. Appl Environ Microbiol 2023, 89 (1), e0186322. https://doi.org/10.1128/aem.01863-22

1004Distaso, M. A.; Chernikova, T. N.; Bargiela, R.; Coscolín, C.; Stogios, P.; Gonzalez-Alfonso, J. L.; Lemak, S.; Khusnutdinova, A. N.; Plou, F. J.; Evdokimova, E.; Savchenko, A.; Lunev, E. A.; Yakimov, M. M.; Golyshina, O. V.; Ferrer, M.; Yakunin, A. F.; Golyshin, P. N., Thermophilic Carboxylesterases from Hydrothermal Vents of the Volcanic Island of Ischia Active on Synthetic and Biobased Polymers and Mycotoxins. Appl Environ Microbiol 2023, 89 (2), e0170422. https://doi.org/10.1128/aem.01704-22

1005Popov, G.; Fiebig-Comyn, A.; Syriste, L.; Little, D. J.; Skarina, T.; Stogios, P. J.; Birstonas, S.; Coombes, B. K.; Savchenko, A., Distinct Molecular Features of NleG Type 3 Secreted Effectors Allow for Different Roles during Citrobacter rodentium Infection in Mice. Infect Immun 2023, 91 (1), e0050522. https://doi.org/10.1128/iai.00505-22

1006Okeke, I. J.; Saville, B. A.; MacLean, H. L., Low carbon hydrogen production in Canada via natural gas pyrolysis. Int. J. Hydrogen Energy 2023, 48 (34), 12581-12599. https://doi.org/https://doi.org/10.1016/j.ijhydene.2022.12.169

1007Karlikow, M.; Amalfitano, E.; Yang, X.; Doucet, J.; Chapman, A.; Mousavi, P. S.; Homme, P.; Sutyrina, P.; Chan, W.; Lemak, S.; Yakunin, A. F.; Dolezal, A. G.; Kelley, S.; Foster, L. J.; Harpur, B. A.; Pardee, K., CRISPR-induced DNA reorganization for multiplexed nucleic acid detection. Nat Commun 2023, 14 (1), 1505. https://doi.org/10.1038/s41467-023-36874-6

1008Guo, Y.; Karimullina, E.; Emde, T.; Otwinowski, Z.; Borek, D.; Savchenko, A., Monomer and dimer structures of cytochrome bo(3) ubiquinol oxidase from Escherichia coli. Protein Sci. 2023, 32 (4), e4616. https://doi.org/10.1002/pro.4616

1009Lee, H.; Fitamo, T. M.; Nesbø, C. L.; Guilford, N. G. H.; Kanger, K.; Yang, M. I.; Edwards, E. A., Microbial community dynamics of a sequentially fed anaerobic digester treating solid organic waste. FEMS Microbiol. Ecol. 2023, 99 (3), fiad017. https://doi.org/10.1093/femsec/fiad017

1010Lash, E.; Prudent, V.; Stogios, P. J.; Savchenko, A.; Noble, S. M.; Robbins, N.; Cowen, L. E., Ent2 Governs Morphogenesis and Virulence in Part through Regulation of the Cdc42 Signaling Cascade in the Fungal Pathogen Candida albicans. mBio 2023, 14 (2), e0343422. https://doi.org/10.1128/mbio.03434-22

1011Lee, D.; Latour, S.; Emblem, M.; Clark, H. J.; Santos, J. T.; Jang, J.; McGuigan, A. P.; Nitz, M., Characterization of an N-Allylglyoxylamide-Based Bioorthogonal Nitrone Trap. Bioconjug. Chem. 2023, 34 (12), 2358-2365. https://doi.org/10.1021/acs.bioconjchem.3c00463

1012Cao, R.; Li, N. T.; Latour, S.; Cadavid, J. L.; Tan, C. M.; Forman, A.; Jackson, H. W.; McGuigan, A. P., An Automation Workflow for High-Throughput Manufacturing and Analysis of Scaffold-Supported 3D Tissue Arrays. Adv Healthc Mater 2023, e2202422. https://doi.org/10.1002/adhm.202202422

1013Semper, C.; Savchenko, A., Protein expression and purification of bioactive growth factors for use in cell culture and cellular agriculture. STAR Protoc 2023, 4 (3), 102351. https://doi.org/10.1016/j.xpro.2023.102351

1014Fuzzen, M.; Harper, N. B. J.; Dhiyebi, H. A.; Srikanthan, N.; Hayat, S.; Bragg, L. M.; Peterson, S. W.; Yang, I.; Sun, J. X.; Edwards, E. A.; Giesy, J. P.; Mangat, C. S.; Graber, T. E.; Delatolla, R.; Servos, M. R., An improved method for determining frequency of multiple variants of SARS-CoV-2 in wastewater using qPCR assays. Sci. Total Environ. 2023, 881, 163292. https://doi.org/10.1016/j.scitotenv.2023.163292

1015Diep, P.; Leo Shen, H.; Wiesner, J. A.; Mykytczuk, N.; Papangelakis, V.; Yakunin, A. F.; Mahadevan, R., Engineered nickel bioaccumulation in Escherichia coli by NikABCDE transporter and metallothionein overexpression. Eng. Life Sci. 2023. https://doi.org/10.1002/elsc.202200133

1016Chen, X.; Molenda, O.; Brown, C. T.; Toth, C. R. A.; Guo, S.; Luo, F.; Howe, J.; Nesbø, C. L.; He, C.; Montabana, E. A.; Cate, J. H. D.; Banfield, J. F.; Edwards, E. A., "Candidatus Nealsonbacteria" Are Likely Biomass Recycling Ectosymbionts of Methanogenic Archaea in a Stable Benzene-Degrading Enrichment Culture. Appl Environ Microbiol 2023, 89 (5), e0002523. https://doi.org/10.1128/aem.00025-23

1017Arellano-Saab, A.; Skarina, T.; Xu, Z.; McErlean, C. S. P.; Savchenko, A.; Lumba, S.; Stogios, P. J.; McCourt, P., Structural analysis of a hormone-bound Striga strigolactone receptor. Nat Plants 2023. https://doi.org/10.1038/s41477-023-01423-y

1018Siddiqui, J.; McGee, E. J. T.; Mhasavade, D.; Palagiri, S.; Balamurugan, V.; Diosady, L. L., Spray Encapsulation of Iron in Chitosan Biopolymer for Tea Fortification. J. Food Qual. 2023, 2023, 4127663. https://doi.org/10.1155/2023/4127663

1019Zak, M. T. E.; Papangelakis, V. G.; Allen, D. G., Biosorption of lanthanum by acidophile Euglena mutabilis biofilms and the role of extracellular polymeric substances. Algal Research 2023, 72, 103111. https://doi.org/https://doi.org/10.1016/j.algal.2023.103111

1020Vatandoust, A.; Krishnaswamy, K.; Li, Y. O.; Diosady, L., Triple fortification of salt with iron, iodine and zinc oxide using extrusion. J. Food Eng. 2023, 339, 111258. https://doi.org/https://doi.org/10.1016/j.jfoodeng.2022.111258

1021Gonçalves, M. C. P.; Cansian, A. B. M.; Tardioli, P. W.; Saville, B. A., Production of sugars from mixed hardwoods for use in the synthesis of sugar fatty acid esters catalyzed by immobilized-stabilized derivatives of Candida antarctica lipase B. Biofuels, Bioproducts and Biorefining 2023. https://doi.org/10.1002/bbb.2517

1022Venturelli, O. S.; Wang, H. H.; Estrela, S.; Huang, K. C.; Ledesma-Amaro, R.; Fedorec, A. J. H.; Stecher, B.; Lawson, C. E.; Zarrinpar, A.; Guo, C.-J.; Soyer, O. S., What is the key challenge in engineering microbiomes? Cell Systems 2023, 14 (2), 85-90. https://doi.org/https://doi.org/10.1016/j.cels.2023.01.002

1023Panda, S.; Zhou, J. F. J.; Feigis, M.; Harrison, E.; Ma, X.; Fung Kin Yuen, V.; Mahadevan, R.; Zhou, K., Engineering Escherichia coli to produce aromatic chemicals from ethylene glycol. Metab. Eng. 2023, 79, 38-48. https://doi.org/10.1016/j.ymben.2023.06.012

1024Suchana, S.; Edwards, E.; Mack, E. E.; Lomheim, L.; Melo, N.; Gavazza, S.; Passeport, E., Compatibility of polar organic chemical integrative sampler (POCIS) with compound specific isotope analysis (CSIA) of substituted chlorobenzenes. Sci. Total Environ. 2023, 906, 167628. https://doi.org/10.1016/j.scitotenv.2023.167628

1025Melo, N.; Araújo, S. P.; de Paula Queiroz Kraus, S.; Lomheim, L.; Quintero, P. B.; Mack, E. E.; Edwards, E. A.; Spain, J.; Gavazza, S., Strategies for Bioremediation of Soil from an Industrial Site Exposed to Chlorinated and Nitroaromatic Compounds. Groundwater Monit. Rem. 2023. https://doi.org/10.1111/gwmr.12596

1026Diep, P.; Kell, B.; Yakunin, A.; Hilfinger, A.; Mahadevan, R., Quantifying metal-binding specificity of CcNikZ-II from Clostridium carboxidivorans in the presence of competing metal ions. Anal. Biochem. 2023, 676, 115182. https://doi.org/10.1016/j.ab.2023.115182

1027Khusnutdinova, A. N.; Batyrova, K. A.; Brown, G.; Fedorchuk, T.; Chai, Y. S.; Skarina, T.; Flick, R.; Petit, A. P.; Savchenko, A.; Stogios, P.; Yakunin, A. F., Structural insights into hydrolytic defluorination of difluoroacetate by microbial fluoroacetate dehalogenases. FEBS J. 2023. https://doi.org/10.1111/febs.16903

1028Chen, J.; Liu, Y.; Mahadevan, R., Genetic Engineering of Acidithiobacillus ferridurans Using CRISPR Systems To Mitigate Toxic Release in Biomining. Environ Sci Technol 2023, 57 (33), 12315-12324. https://doi.org/10.1021/acs.est.3c02492

1029Landon-Brace, N.; Li, N. T.; McGuigan, A. P., Exploring New Dimensions of Tumor Heterogeneity: The Application of Single Cell Analysis to Organoid-Based 3D In Vitro Models. Adv Healthc Mater 2023, e2300903. https://doi.org/10.1002/adhm.202300903

1030Mathieu, Y.; Raji, O.; Bellemare, A.; Di Falco, M.; Nguyen, T. T. M.; Viborg, A. H.; Tsang, A.; Master, E.; Brumer, H., Functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation. Biotechnol Biofuels Bioprod 2023, 16 (1), 132. https://doi.org/10.1186/s13068-023-02383-3

1031Skrivergaard, S.; Young, J. F.; Sahebekhtiari, N.; Semper, C.; Venkatesan, M.; Savchenko, A.; Stogios, P. J.; Therkildsen, M.; Rasmussen, M. K., A simple and robust serum-free media for the proliferation of muscle cells. Food Res. Int. 2023, 172, 113194. https://doi.org/https://doi.org/10.1016/j.foodres.2023.113194

1032Saffarionpour, S.; Diosady, L. L., Preparation and characterization of an iron-β-cyclodextrin inclusion complex: factors influencing the host-guest interaction. Food Funct. 2023. https://doi.org/10.1039/d3fo00090g

1033Toth, C. R. A.; Molenda, O.; Nesbø, C.; Luo, F.; Devine, C.; Guo, S.; Chen, X.; Edwards, E. A., Metagenomic and Genomic Sequences from a Methanogenic Benzene-Degrading Consortium. Microbiol Resour Announc 2023, 12 (5), e0134222. https://doi.org/10.1128/mra.01342-22

1034Barghout, R. A.; Xu, Z.; Betala, S.; Mahadevan, R., Advances in generative modeling methods and datasets to design novel enzymes for renewable chemicals and fuels. Curr. Opin. Biotechnol. 2023, 84, 103007. https://doi.org/10.1016/j.copbio.2023.103007

1035Oyewole, A. O.; Diosady, L. L., Evaluating the potential of Hibiscus sabdariffa beverage to address the prevalence of iron deficiency in sub-Saharan Africa. LWT 2023, 188. https://doi.org/10.1016/j.lwt.2023.115433

1036Lin, J. D.; Stogios, P. J.; Abe, K. T.; Wang, A.; MacPherson, J.; Skarina, T.; Gingras, A. C.; Savchenko, A.; Ensminger, A. W., Functional diversification despite structural congruence in the HipBST toxin-antitoxin system of Legionella pneumophila. mBio 2023, 14 (5), e0151023. https://doi.org/10.1128/mbio.01510-23

1037Bordeleau, E.; Stogios, P. J.; Evdokimova, E.; Koteva, K.; Savchenko, A.; Wright, G. D., Mechanistic plasticity in ApmA enables aminoglycoside promiscuity for resistance. Nat. Chem. Biol. 2023. https://doi.org/10.1038/s41589-023-01483-3

1038Liu, J.; Edwards, E.; Van Hamme, J.; Manefield, M.; Higgins, C. P.; Blotevogel, J.; Liu, J.; Lee, L. S., Correspondence on "Defluorination of Perfluorooctanoic Acid (PFOA) and Perfluorooctane Sulfonate (PFOS) by Acidimicrobium sp. Strain A6". Environ Sci Technol 2023, 57 (48), 20440-20442. https://doi.org/10.1021/acs.est.3c06681

1039Bulka, O.; Webb, J.; Dworatzek, S.; Mahadevan, R.; Edwards, E. A., A Multifunctional Dehalobacter? Tandem Chloroform and Dichloromethane Degradation in a Mixed Microbial Culture. Environ Sci Technol 2023, 57 (48), 19912-19920. https://doi.org/10.1021/acs.est.3c06686

1040Raji, O.; Eijsink, V. G. H.; Master, E.; Forsberg, Z., Modularity impacts cellulose surface oxidation by a lytic polysaccharide monooxygenase from Streptomyces coelicolor. Cellulose 2023. https://doi.org/10.1007/s10570-023-05551-8

1041Dahiya, D.; Koitto, T.; Kutvonen, K.; Wang, Y.; Haddad Momeni, M.; de Ruijter, S.; Master, E. R., Fungal loosenin-like proteins boost the cellulolytic enzyme conversion of pretreated wood fiber and cellulosic pulps. Bioresour. Technol. 2023, 394, 130188. https://doi.org/10.1016/j.biortech.2023.130188

1042Robbins, B.; Gaona, A.; Tavasoli, A.; Bergerson, J. A.; Saville, B. A.; MacLean, H. L., Life cycle environmental performance of methanol production through photocatalytic dry methane reforming. J. CO2 Util. 2024, 79. https://doi.org/10.1016/j.jcou.2023.102638

1043Sharan, A. A.; Bellemare, A.; DiFalco, M.; Tsang, A.; Vuong, T. V.; Edwards, E. A.; Master, E. R., Functional screening pipeline to uncover laccase-like multicopper oxidase enzymes that transform industrial lignins. Bioresour. Technol. 2024, 393, 130084. https://doi.org/10.1016/j.biortech.2023.130084

1044Nesbø, C. L.; Fitamo, T. M.; Lee, H.; Edwards, E. A., Metagenomes and metagenome-assembled genomes from a sequentially fed anaerobic digester treating solid organic municipal waste. Microbiol Resour Announc 2024, 13 (1), e0091923. https://doi.org/10.1128/mra.00919-23

1045Potter, N.; Latour, S.; Wong, E. C. N.; Winnik, M. A.; Jackson, H. W.; McGuigan, A. P.; Nitz, M., Design Parameters for a Mass Cytometry Detectable HaloTag Ligand. Bioconjugate Chemistry 2024, 35 (1), 80-91. https://doi.org/10.1021/acs.bioconjchem.3c00434

1046Hiltunen, S.; Sapkota, J.; Ioannou, E.; Haddad Momeni, M.; Master, E.; Ristolainen, M., Comparative assessment of chemical and biochemical approaches for the activation of lignocellulosic materials and emerging opportunities for expansin-related proteins. Cellulose 2024, 31 (1), 147-168. https://doi.org/10.1007/s10570-023-05637-3

1047Chan, Y. K. K.; Sodhi, R. N. S.; Cheng, Y.-L.; Diosady, L. L., Characterization of granular micronutrient premixes for food fortification. J. Food Process Eng. 2024, 47 (2), e14543. https://doi.org/https://doi.org/10.1111/jfpe.14543

1048Leshuk, T. M. C.; Young, Z. W.; Wilson, B.; Chen, Z. Q.; Smith, D. A.; Lazaris, G.; Gopanchuk, M.; McLay, S.; Seelemann, C. A.; Paradis, T.; Bekele, A.; Guest, R.; Massara, H.; White, T.; Zubot, W.; Letinski, D. J.; Redman, A. D.; Allen, D. G.; Gu, F., A Light Touch: Solar Photocatalysis Detoxifies Oil Sands Process-Affected Waters Prior to Significant Treatment of Naphthenic Acids. ACS ES&T Water 2024. https://doi.org/10.1021/acsestwater.3c00616

1049Feng, X.; Hong, S.; Zhao, H.; Vuong, T. V.; Master, E. R., Biocatalytic cascade to polysaccharide amination. Biotechnol Biofuels Bioprod 2024, 17 (1), 34. https://doi.org/10.1186/s13068-024-02477-6

1050Syriste, L.; Patel, D. T.; Stogios, P. J.; Skarina, T.; Patel, D.; Savchenko, A., An acetyltransferase effector conserved across Legionella species targets the eukaryotic eIF3 complex to modulate protein translation. mBio 2024, 15 (3), e0322123. https://doi.org/10.1128/mbio.03221-23

1051Kastenhofer, J.; Spadiut, O.; Papangelakis, V. G.; Allen, D. G., Roles of pH and phosphate in rare earth element biosorption with living acidophilic microalgae. Appl Microbiol Biotechnol 2024, 108 (1), 262. https://doi.org/10.1007/s00253-024-13068-8

1052Pattisapu, J. V.; Manda, V. V.; Kottakki, M. N. R.; Kajana, P. M.; Kancherla, V.; Bhaganagarapu, H. R.; Veerappan, V.; Ediga, A.; Mannar, V.; Diosady, L.; Oakley, G. P., Jr., Folic Acid-Fortified Iodized Salt and Serum Folate Levels in Reproductive-Aged Women of Rural India: A Nonrandomized Controlled Trial. JAMA Netw Open 2024, 7 (3), e241777. https://doi.org/10.1001/jamanetworkopen.2024.1777

1053Zhao, H.; Karppi, J.; Mototsune, O.; Poshina, D.; Svartström, J.; Nguyen, T. T. M.; Vo, T. M.; Tsang, A.; Master, E.; Tenkanen, M., Substrate specificity mapping of fungal CAZy AA3_2 oxidoreductases. Biotechnol Biofuels Bioprod 2024, 17 (1), 47. https://doi.org/10.1186/s13068-024-02491-8

1054Diep, P.; Stogios, P. J.; Evdokimova, E.; Savchenko, A.; Mahadevan, R.; Yakunin, A. F., Ni(II)-binding affinity of CcNikZ-II and its homologs: the role of the HH-prong and variable loop revealed by structural and mutational studies. FEBS J. 2024. https://doi.org/10.1111/febs.17125

1055Sun, J.; Yang, M. I.; Peng, J.; Khan, I.; Lopez, J. J.; Chan, R.; Edwards, E. A.; Peng, H., Underestimation of SARS-CoV-2 in wastewater due to single or double mutations in the N1 qPCR probe binding region. Water Res X 2024, 22, 100221. https://doi.org/10.1016/j.wroa.2024.100221

1056Garieri, T.; Allen, D. G.; Gao, W.; Liao, B., A review of emerging membrane-based microalgal-bacterial processes for wastewater treatment: Process configurations, biological and membrane performance, and perspectives. Sci. Total Environ. 2024, 927, 172141. https://doi.org/10.1016/j.scitotenv.2024.172141

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