Publications

Number
Publication
1Diosady, L. L.; Sleggs, P.; Kaji, T., Chemical degumming of canola oils. J. Am. Oil Chem. Soc. 1982, 59 (7), 313-316. https://doi.org/10.1007/BF02662234
2Kulakova, S. M.; Yakunin, A. F.; Gogotov, I. N., Resistance of hydrogenase and nitrogenase of purple bacteria to oxygen and products of its reduction. Prikladnaya Biokhimiya i Mikrobiologiya 1982, 18 (3), 324-330.

3Tsygankov, A. A.; Yakunin, A. F.; Gogotov, I. N., Hydrogenase activity of Rhodopseudomonas capsulata growing in organic media. Mikrobiologiya 1982, 51 (4), 533-537.

4Diosady, L. L.; Rubin, L. J.; Ting, N.; Trass, O., Rapid extraction of canola oil. J. Am. Oil Chem. Soc. 1983, 60 (9), 1658-1661. https://doi.org/10.1007/BF02662427
5Sefton, M. V.; Horvath, V.; Allen, D. G.; Zingg, W., Insulin delivery from an implanted controlled release micropump in pancreatectomized dogs. Trans. Am. Soc. Artif. Intern. Organs 1983, 29 (1), 714-718.

6Tsygankov, A. A.; Yakunin, A. F.; Gogotov, I. N., The effect of pO2 on the growth and hydrogenase and nitrogenase activities of Rhodopseudomonas capsulata and Azotobacter vinelandii cells. Mikrobiologiya 1983, 52 (4), 543-547.

7Yakunin, A. F.; Gogotov, I. N., Properties and regulation of synthesis of two ferredoxins from Rhodopseudomonas capsulata. BBA - Bioenergetics 1983, 725 (2), 298-308. https://doi.org/10.1016/0005-2728(83)90203-7
8Davidson, V. J.; Paton, D.; Diosady, L. L.; Larocque, G., Degradation of wheat starch in a single screw extruder: Characteristics of extruded starch polymers. J. Food Sci. 1984, 49 (2), 453-458. https://doi.org/10.1111/j.1365-2621.1984.tb12441.x
9Davidson, V. J.; Paton, D.; Diosady, L. L.; Rubin, L. J., A model for mechanical degradation of wheat starch in a single‐screw extruder. J. Food Sci. 1984, 49 (4), 1154-1157. https://doi.org/10.1111/j.1365-2621.1984.tb10416.x
10Diosady, L. L.; Sleggs, P. W.; Kaji, T., Scale-up of canola oil degumming. J. Am. Oil Chem. Soc. 1984, 61 (8), 1366-1369. https://doi.org/10.1007/BF02542244
11Shahidi, F.; Naczk, M.; Rubin, L. J.; Diosady, L. L., Functional properties of blood globin. J. Food Sci. 1984, 49 (2), 370-372. https://doi.org/10.1111/j.1365-2621.1984.tb12424.x
12Yakunin, A. F.; Gogotov, I. N., The activity of two forms of nitrogenase from Rhodopseudomonas capsulata in the presence of different electron donors. FEMS Microbiol. Lett. 1984, 23 (2-3), 217-220.

13Bello, C.; Diosady, L. L.; Graydon, W. F.; Rubin, L. J., Homogeneous catalytic hydrogenation of canola oil using a ruthenium catalyst. Journal of the American Oil Chemists’ Society 1985, 62 (11), 1587-1592. https://doi.org/10.1007/BF02541693
14Caceres, L.; Diosady, L. L.; Graydon, W. F.; Rubin, L. J., Supported gold catalysis in the hydrogenation of canola oil. J. Am. Oil Chem. Soc. 1985, 62 (5), 906-910. https://doi.org/10.1007/BF02541755
15Diosady, L. L.; Naczk, M.; Rubin, L. J., The effect of ammonia concentration on the properties of canola meals produced by the ammonia-methanol/hexane extraction system. Food Chem. 1985, 18 (2), 121-130. https://doi.org/10.1016/0308-8146(85)90135-9
16Diosady, L. L.; Paton, D.; Rosen, N.; Rubin, L. J.; Athanassoulias, C., Degradation of wheat starch in a single‐screw extruder: Mechano‐kinetic breakdown of cooked starch. J. Food Sci. 1985, 50 (6), 1697-1699. https://doi.org/10.1111/j.1365-2621.1985.tb10568.x
17Naczk, M.; Diosady, L. L.; Rubin, L. J., Functional properties of canola meals produced by a two‐phase solvent extraction system. J. Food Sci. 1985, 50 (6), 1685-1688. https://doi.org/10.1111/j.1365-2621.1985.tb10565.x
18Shahidi, F.; Rubin, L. J.; Diosady, L. L.; Wood, D. F., Effect of sulfanilamide on the TBA values of cured meats. J. Food Sci. 1985, 50 (1), 274-275. https://doi.org/10.1111/j.1365-2621.1985.tb13332.x
19Shahidi, F.; Rubin, L. J.; Diosady, L. L.; Wood, D. F., Preparation of the cooked cured‐meat pigment, dinitrosyl ferrohemochrome, from gemin and nitric oxide. J. Food Sci. 1985, 50 (1), 272-273. https://doi.org/10.1111/j.1365-2621.1985.tb13331.x
20Yakunin, A. F.; Tsygankov, A. A.; Gogotov, I. N., Ratio of two forms of nitrogenase and the effect of its turnoff in cells of Rhodopseudomonas capsulata grown under conditions of ammonium limitation. Dokl. Biochem. 1985, 281 (1-6), 79-82.

21Allen, D. G.; Sefton, M. V., A model of insulin delivery by a controlled release micropump. Ann. Biomed. Eng. 1986, 14 (3), 257-276. https://doi.org/10.1007/BF00000004
22Diosady, L. L.; Rubin, L. J.; Tar, C. G.; Etkin, B., Air classification of rapeseed meal using the tervel separator. Can. J. Chem. Eng. 1986, 64 (5), 768-774. https://doi.org/10.1002/cjce.5450640508
23Hsu, N.; Diosady, L. L.; Graydon, W. F.; Rubin, L. J., Heterogeneous catalytic hydrogenation of canola oil using palladium. J. Am. Oil Chem. Soc. 1986, 63 (8), 1036-1042. https://doi.org/10.1007/BF02673794
24Naczk, M.; Diosady, L. L.; Rubin, L. J., The phytate and complex phenol content of meals produced by alkanol-ammonia/hexane extraction of canola. LWT - Food Science and Technology 1986, 19 (1), 13-16.

25Rubin, L. J.; Köseoglu, S. S.; Diosady, L. L.; Graydon, W. F., Hydrogenation of canola oil in the presence of nickel and the methyl benzoate-chrome carbonyl complex. J. Am. Oil Chem. Soc. 1986, 63 (12), 1551-1557. https://doi.org/10.1007/BF02553083
26Saville, B. A.; Gray, M. R.; Tam, Y. K., The metabolism of lidocaine in the liver: Steady‐state and dynamic modelling. Can. J. Chem. Eng. 1986, 64 (4), 617-624. https://doi.org/10.1002/cjce.5450640412
27Shahidi, F.; Rubin, L. J.; Diosady, L. L.; Kassam, N.; Fong, J. C. L. S.; Wood, D. F., Effect of sequestering agents on lipid oxidation in cooked meats. Food Chem. 1986, 21 (2), 145-152. https://doi.org/10.1016/0308-8146(86)90159-7
28Allen, D. G.; Robinson, C. W., The influence of "slip" on rheological measurements on a mycelial broth of Aspergillus niger. Ann. N. Y. Acad. Sci. 1987, 506, 589-99. https://doi.org/10.1111/j.1749-6632.1987.tb23853.x
29Gray, M. R.; Saville, B. A.; Tam, Y. K., Mechanisms of lidocaine kinetics in the isolated perfused rat liver. III. Evaluation of liver models for time-dependent behavior. Drug Metab. Disposition 1987, 15 (1), 22-26.

30Moo‐Young, M.; Halard, B.; Allen, D. G.; Burrell, R.; Kawase, Y., Oxygen transfer to mycelial fermentation broths in an airlift fermentor. Biotechnology and Bioengineering 1987, 30 (6), 746-753. https://doi.org/10.1002/bit.260300607
31Saville, B. A.; Gray, M. R.; Tam, Y. K., Mechanisms of lidocaine kinetics in the isolated perfused rat liver. II. Kinetics of steady state elimination. Drug Metab. Disposition 1987, 15 (1), 17-21.

32Tzeng, Y. M.; Diosady, L. L.; Rubin, L. J., Preparation of rapeseed protein isolate by sodium hexametaphosphate extraction, ultrafiltration, diafiltration, and ion‐exchange. J. Food Sci. 1988, 53 (5), 1537-1541. https://doi.org/10.1111/j.1365-2621.1988.tb09318.x
33Yakunin, A. F.; Gogotov, I. N., Formation of two forms of nitrogenase and effects of its switch-off by ammonia in purple bacteria. Microbiol. Sci. 1988, 5 (3), 78-81.

34Allen, D. G.; Robinson, C. W., Hydrodynamics and mass transfer in Aspergillus niger fermentations in bubble column and loop bioreactors. Biotechnology and Bioengineering 1989, 34 (6), 731-740. https://doi.org/10.1002/bit.260340602
35Bernstein, P. A.; Graydon, W. F.; Diosady, L. L., Hydrogenation of canola oil using chromium catalysts. J. Am. Oil Chem. Soc. 1989, 66 (5), 680-684. https://doi.org/10.1007/BF02669951
36Ch'ang, W. N.; Yakunin, A. F.; Gogotov, I. N., The ability of the free-living cyanobacterium Anabaena azollae to synthesize alternative nitrogenases. Dokl. Biochem. 1989, 309 (1-6), 361-363.

37Diosady, L. L.; Tar, C. G.; Rubin, L. J.; Sidaway-Wolf, D., Use of liquid cyclones in extraction of oil from ground canola seed. Transactions of the American Society of Agricultural Engineers 1989, 32 (5), 1754-1758.

38Hsu, N.; Diosady, L. L.; Rubin, L. J., Catalytic behavior of palladium in the hydrogenation of edible oils II. Geometrical and positional isomerization characteristics. J. Am. Oil Chem. Soc. 1989, 66 (2), 232-236. https://doi.org/10.1007/BF02546066
39Saville, B. A.; Gray, M. R.; Tam, Y. K., Evidence for lidocaine‐lnduced enzyme inactivation. J. Pharm. Sci. 1989, 78 (12), 1003-1008. https://doi.org/10.1002/jps.2600781207
40Tar, C. G.; Diosady, L. L.; Rubin, L. J.; Sidaway-Wolf, D. M., Simultaneous grinding and extraction of canola in the Szego mill using methanol/ammonia/water and hexane. Transactions of the American Society of Agricultural Engineers 1989, 32 (2), 751-755.

41Yakunin, A. F.; Ch'ang Wang, N.; Gogotov, I. N., Formation of alternative nitrogenases of the heterocystic cyanobacterium Anabaena variabilis. Dokl. Biochem. 1989, 307 (1-6), 239-240.

42Carbohydrate PolymersChan Van, N.; Yakunin, A. F.; Gogotov, I. N., The effect of molybdenum, vanadium and tungsten on the growth of a free-living Anabaena azollae cyanobacterium and on its synthesis of nitrogenase. Mikrobiologiya 1990, 59 (4), 583-586.

43Chan Van, N.; Yakunin, A. F.; Gogotov, I. N., The effect of bound nitrogen forms on the growth and synthesis of different nitrogenases in Anabaena variabilis. Mikrobiologiya 1990, 59 (3), 394-398.

44Tzeng, Y. M.; Diosady, L. L.; Rubin, L. J., Production of canola protein materials by alkaline extraction, precipitation, and membrane processing. J. Food Sci. 1990, 55 (4), 1147-1151. https://doi.org/10.1111/j.1365-2621.1990.tb01619.x
45Yakunin, A. F.; Chan, K.; Gogotov, I. N., The effect of molybdenum on the growth, nitrogenase and nitrate reductase activities of the heterocystic cyanobacterium Anabaena sphaerica. Mikrobiologiya 1990, 59 (6), 956-961.

46Yakunin, A. F.; Chan, K.; Gogotov, I. N., The growth, nitrogenase and nitrate reductase activities of Anabaena sphaerica at a deficiency of certain ions in the medium. Mikrobiologiya 1990, 59 (5), 771-776.

47Yakunin, A. F.; Chan, K.; Laurinavichene, T. V.; Gogotov, I. N., Purification and properties of two ferredoxins from the nitrogen-fixing heterocystous cyanobacterium Anabaena sphaerica. Biokhimiya 1990, 55 (1), 80-86.

48Allen, D. G.; Robinson, C. W., Comments on the communication: On the calculation of shear rate and apparent viscosity in airlift and bubble column bioreactors. Biotechnology and Bioengineering 1991, 38 (2), 212-216. https://doi.org/10.1002/bit.260380214
49Allen, D. G.; Robinson, C. W., The prediction of transport parameters in filamentous fermentation broths based on results obtained in pseudoplastic polymer solutions. The Canadian Journal of Chemical Engineering 1991, 69 (2), 498-505. https://doi.org/10.1002/cjce.5450690214
50Ramarathnam, N.; Rubin, L. J.; Diosady, L. L., Studies on meat flavor. 1. Qualitative and quantitative differences in uncured and cured pork. Journal of Agricultural and Food Chemistry 1991, 39 (2), 344-350.

51Ramarathnam, N.; Rubin, L. J.; Diosady, L. L., Studies on meat flavor. 2. A quantitative investigation of the volatile carbonyls and hydrocarbons in uncured and cured beef and chicken. Journal of Agricultural and Food Chemistry 1991, 39 (10), 1839-1847.

52Tomar, P.; Allen, D. G., Removal of organochlorines from kraft pulp mill effluent by an aerated logoon. Water pollution research journal of Canada 1991, 26 (1), 101-117.

53Ackerman, J. D.; Ethier, C. R.; Allen, D. G.; Spelt, J. K., Investigation of zebra mussel adhesion strength using rotating disks. Journal of Environmental Engineering (United States) 1992, 118 (5), 708-724. https://doi.org/10.1061/(ASCE)0733-9372(1992)118:5(708)
54Cherysh, A.; Liss, S. N.; Allen, D. G., Batch study of the aerobic and anaerobic removal of chlorinated organic compounds in an aerated lagoon. Water pollution research journal of Canada 1992, 27 (3), 621-638.

55Edwards, E. A.; Grbic-Galic, D., Complete mineralization of benzene by aquifer microorganisms under strictly anaerobic conditions. Applied and Environmental Microbiology 1992, 58 (8), 2663-2666. https://doi.org/10.1128/aem.58.8.2663-2666.1992
56Edwards, E. A.; Wills, L. E.; Reinhard, M.; Grbic-Galic, D., Anaerobic degradation of toluene and xylene by aquifer microorganisms under sulfate-reducing conditions. Applied and Environmental Microbiology 1992, 58 (3), 794-800. https://doi.org/10.1128/aem.58.3.794-800.1992
57Leong‐Poi, L.; Allen, D. G., Direct measurement of the yield stress of filamentous fermentation broths with the rotating vane technique. Biotechnology and Bioengineering 1992, 40 (3), 403-412. https://doi.org/10.1002/bit.260400310
58O'Boyle, A. R.; Aladin‐Kassam, N.; Rubin, L. J.; Diosady, L. L., Encapsulated cured‐meat pigment and its application in nitrite‐free ham. J. Food Sci. 1992, 57 (4), 807-812. https://doi.org/10.1111/j.1365-2621.1992.tb14299.x
59Saville, B. A.; Gray, M. R.; Tam, Y. K., Experimental studies of transient mass transfer and reaction in the liver: Interpretation with a heterogeneous compartment model. J. Pharm. Sci. 1992, 81 (3), 265-271. https://doi.org/10.1002/jps.2600810316
60Saville, B. A.; Gray, M. R.; Tam, Y. K., Models of hepatic drug elimination. Drug Metab. Rev. 1992, 24 (1), 49-88.

61Saville, B. A.; Persi, S., The effect of oxygen upon the kinetics of enzyme inactivation: In vitro investigations using glutamine synthetase. Can. J. Chem. Eng. 1992, 70 (6), 1143-1148. https://doi.org/10.1002/cjce.5450700614
62Adu-Peasah, S. P.; Diosady, L. L.; Rubin, L. J., A multistage hydrocyclone/stirred-tank system for countercurrent extraction of canola oil. Journal of the American Oil Chemists’ Society 1993, 70 (8), 755-762. https://doi.org/10.1007/BF02542596
63Cai, W.; Diosady, L. L., Model for gelatinization of wheat starch in a twin‐screw extruder. J. Food Sci. 1993, 58 (4), 872-875. https://doi.org/10.1111/j.1365-2621.1993.tb09380.x
64Friedrich, S. W.; Cheng, Y. L.; Saville, B. A., Theoretical corneal permeation model for ionizable drugs. J. Ocul. Pharmacol. 1993, 9 (3), 229-249.

65Fulthorpe, R. R.; Liss, S. N.; Allen, D. G., Characterization of bacteria isolated from a bleached kraft pulp mill wastewater treatment system. Can. J. Microbiol. 1993, 39 (1), 13-24.

66Ramarathnam, N.; Rubin, L. J.; Diosady, L. L., Studies on meat flavor. 3. A novel method for trapping volatile components from uncured and cured pork. Journal of Agricultural and Food Chemistry 1993, 41 (6), 933-938.

67Ramarathnam, N.; Rubin, L. J.; Diosady, L. L., Studies on meat flavor. 4. Fractionation, characterization, and quantitation of volatiles from uncured and cured beef and chicken. Journal of Agricultural and Food Chemistry 1993, 41 (6), 939-945.

68Tamagnini, P.; Yakunin, A. F.; Gogotov, I. N.; Lindblad, P., Plant-type and bacterial-type ferredoxins in a nitrogen-fixing cyanobacterium: Nostoc sp. strain PCC 73102. FEMS Microbiol. Lett. 1993, 107 (1), 37-42.

69Yakunin, A. F.; Gennaro, G.; Hallenbeck, P. C., Purification and properties of a nif-specific flavodoxin from the photosynthetic bacterium Rhodobacter capsulatus. J. Bacteriol. 1993, 175 (21), 6775-6780.

70Yakunin, A. F.; Hallenbeck, P. C.; Troshina, O. Y.; Gogotov, I. N., Purification and properties of a bacterial-type ferredoxin from the nitrogen-fixing cyanobacterium Anabaena variabilis ATCC29413. Biochim. Biophys. Acta 1993, 1163 (2), 124-130. https://doi.org/10.1016/0167-4838(93)90173-O
71Yakunin, A. F.; Hallenbeck, P. C.; Troshina, O. Y.; Gogotov, I. N., Purification and properties of a flavodoxin from the heterocystous cyanobacterium Anabaena sphaerica. Biochim. Biophys. Acta 1993, 1164 (3), 305-310. https://doi.org/10.1016/0167-4838(93)90263-Q
72Ackerman, J. D.; Wong, L.; Ethier, C. R.; Allen, D. G.; Spelt, J. K., Preston-static tubes for the measurement of wall shear stress. Journal of Fluids Engineering, Transactions of the ASME 1994, 116 (3), 645-649.

73Chiu, R.; Saville, B. A., Effect of oxygen upon the kinetics of tyrosinase inactivation. Food and Bioproducts Processing: Transactions of the Institution of of Chemical Engineers, Part C 1994, 72 (1), 41-46.

74Edwards, E. A.; Edwards, A. M.; Grbic-Galic, D., A method for detection of aromatic metabolites at very low concentrations: Application to detection of metabolites of anaerobic toluene degradation. Applied and Environmental Microbiology 1994, 60 (1), 323-327. https://doi.org/10.1128/aem.60.1.323-327.1994
75Edwards, E. A.; Grbic-Galic, D., Anaerobic degradation of toluene and o-xylene by a methanogenic consortium. Applied and Environmental Microbiology 1994, 60 (1), 313-322. https://doi.org/10.1128/aem.60.1.313-322.1994
76Fulthorpe, R. R.; Allen, D. G., Evaluation of Biolog MT plates for aromatic and chloroaromatic substrate utilization tests. Can. J. Microbiol. 1994, 40 (12), 1067-1071.

77Kautola, H. K.; Allen, D. G., Surface tension measurements on filamentous broths. Biotechnol. Tech. 1994, 8 (2), 83-86. https://doi.org/10.1007/BF00152845
78Oh, C.; Apel, A. J. G.; Saville, B. A.; Cheng, Y. L.; Rootman, D. S., Local efficacy of cyclosporine in corneal transplant therapy. Curr. Eye Res. 1994, 13 (5), 337-343. https://doi.org/10.3109/02713689409167297
79Varga, T. K.; Diosady, L. L., Simultaneous extraction of oil and antinutritional compounds from flaxseed. J. Am. Oil Chem. Soc. 1994, 71 (6), 603-607. https://doi.org/10.1007/BF02540586
80Xu, L.; Diosady, L. L., Functional properties of Chinese rapeseed protein isolates. J. Food Sci. 1994, 59 (5), 1127-1130. https://doi.org/10.1111/j.1365-2621.1994.tb08207.x
81Xu, L.; Diosady, L. L., The production of Chinese rapeseed protein isolates by membrane processing. J. Am. Oil Chem. Soc. 1994, 71 (9), 935-939. https://doi.org/10.1007/BF02542257
82Yan, G.; Allen, D. G., Biosorption of high molecular weight organochlorines in pulp mill effluent. Water Res. 1994, 28 (9), 1933-1941. https://doi.org/10.1016/0043-1354(94)90168-6
83Ackerman, J. D.; Cottrell, C. M.; Ethier, C. R.; Allen, D. G.; Spelt, J. K., A wall jet to measure the attachment strength of zebra mussels. Can. J. Fish. Aquat. Sci. 1995, 52 (1), 126-135. https://doi.org/10.1139/f95-012
84Apel, A.; Oh, C.; Chiu, R.; Saville, B.; Cheng, Y. L.; Rootman, D., A subconjunctival degradable implant for cyclosporine delivery in corneal transplant therapy. Curr. Eye Res. 1995, 14 (8), 659-667. https://doi.org/10.3109/02713689508998493
85Cai, W.; Diosady, L. L.; Rubin, L. J., Degradation of wheat starch in a twin-screw extruder. J. Food Eng. 1995, 26 (3), 289-300. https://doi.org/10.1016/0260-8774(94)00056-F
86Fichtali, J.; van de Voort, F. R.; Diosady, L. L., Performance evaluation of acid casein neutralization process by twin-screw extrusion. J. Food Eng. 1995, 26 (3), 301-318. https://doi.org/10.1016/0260-8774(94)00058-H
87Fulthorpe, R. R.; Allen, D. G., A comparison of organochlorine removal from bleached kraft pulp and paper-mill effluents by dehalogenating Pseudomonas, Ancylobacter and Methylobacterium strains. Applied Microbiology and Biotechnology 1995, 42 (5), 782-789. https://doi.org/10.1007/BF00171962
88Kamilakis, E. G.; Allen, D. G., Cultivating filamentous microorganisms in a cyclone bioreactor: The influence of pumping on cell morphology. Process Biochem. 1995, 30 (4), 353-360. https://doi.org/10.1016/0032-9592(95)87044-X
89Liu, J.; Shi, M.; Diosady, L. L.; Rubin, L. J., Three-phase extraction of Chinese rapeseed using the Karr column. J. Food Eng. 1995, 24 (1), 35-45. https://doi.org/10.1016/0260-8774(94)P1606-X
90Mohseni, M.; Allen, D. G., The effect of particle morphology and concentration on the directly measured yield stress in filamentous suspensions. Biotechnology and Bioengineering 1995, 48 (3), 257-265. https://doi.org/10.1002/bit.260480312
91Oh, C.; Saville, B. A.; Cheng, Y. L.; Rootman, D. S., A compartmental model for the occular pharmacokinetics of cyclosporine in rabbits. Pharmaceutical Research: An Official Journal of the American Association of Pharmaceutical Scientists 1995, 12 (3), 433-437. https://doi.org/10.1023/A:1016268922035
92Pasko, A.; Adzhiev, V.; Sourin, A.; Savchenko, V., Function representation in geometric modeling: concepts, implementation and applications. The Visual Computer 1995, 11 (8), 429-446. https://doi.org/10.1007/BF02464333
93Ackerman, J. D.; Cottrell, C. M.; Ethier, C. R.; Allen, D. G.; Spelt, J. K., Attachment strength of zebra mussels on natural, polymeric, and metallic materials. J. Environ. Eng. 1996, 122 (2), 141-148.

94Diosady, L. L.; Rizvi, S. S. H.; Cai, W.; Jagdeo, D. J., Moisture sorption isotherms of canola meals, and applications to packaging. J. Food Sci. 1996, 61 (1), 204-208.

95Friedrich, S. W.; Saville, B. A.; Cheng, Y. L., Finite element modelling of drug distribution in the vitreous humour of the eye. Invest. Ophthalmol. Vis. Sci. 1996, 37 (3).

96Friedrich, S. W.; Saville, B. A.; Cheng, Y. L.; Rootman, D. S., Pharmacokinetic differences between ocular inserts and eyedrops. J. Ocul. Pharmacol. Ther. 1996, 12 (1), 5-18.

97Gennaro, G.; Hübner, P.; Sandmeier, U.; Yakunin, A. F.; Hallenbeck, P. C., Cloning, characterization, and regulation of nifF from Rhodobacter capsulatus. J. Bacteriol. 1996, 178 (13), 3949-3952.

98Jimenez Hamann, M. C.; Saville, B. A., Enhancement of tyrosinase stability by immobilization on Nylon 66. Food and Bioproducts Processing: Transactions of the Institution of of Chemical Engineers, Part C 1996, 74 (1), 47-52.

99Victorio, L.; Gilbride, K. A.; Allen, D. G.; Liss, S. N., Phenotypic fingerprinting of microbial communities in wastewater treatment systems. Water Res. 1996, 30 (5), 1077-1086. https://doi.org/10.1016/0043-1354(95)00269-3
100Zheng, Y.; Allen, D. G., Biological dechlorination of model organochlorine compounds in bleached kraft mill effluents. Environ. Sci. Technol. 1996, 30 (6), 1890-1895. https://doi.org/10.1021/es950527p
101Diosady, L. L.; Alberti, J. O.; Mannar, M. G. V.; Stone, T. G., Stability of iodine in iodized salt used for correction of iodine-deficiency disorders. Food Nutr. Bull. 1997, 18 (4), 388-396.

102Dong, G.; Vieille, C.; Savchenko, A.; Zeikus, J. G., Cloning, sequencing, and expression of the gene encoding extracellular α-amylase from Pyrococcus furiosus and biochemical characterization of the recombinant enzyme. Applied and Environmental Microbiology 1997, 63 (9), 3569-3576.

103Friedrich, S.; Cheng, Y. L.; Saville, B., Drug distribution in the vitreous humor of the human eye: The effects of intravitreal injection position and volume. Curr. Eye Res. 1997, 16 (7), 663-669. https://doi.org/10.1076/ceyr.16.7.663.5061
104Friedrich, S.; Cheng, Y. L.; Saville, B., Finite element modeling of drug distribution in the vitreous humor of the rabbit eye. Ann. Biomed. Eng. 1997, 25 (2), 303-314. https://doi.org/10.1007/BF02648045
105Friedrich, S.; Saville, B.; Cheng, Y. L., Drug distribution in the vitreous humor of the human eye: The effects of aphakia and changes in retinal permeability and vitreous diffusivity. J. Ocul. Pharmacol. Ther. 1997, 13 (5), 445-459.

106Liu, H.-W.; Liss, S. N.; Allen, D. G., The influence of anoxic conditioning of sludge on enhanced AOX (adsorbable organic halogen) removal in aerobic biological treatment systems. Water Sci. Technol. 1997, 35 (2), 77-84. https://doi.org/https://doi.org/10.1016/S0273-1223(96)00917-1
107Mohseni, M.; Kautola, H.; Allen, D. G., The viscoelastic nature of filamentous fermentation broths and its influence on the directly measured yield stress. Journal of Fermentation and Bioengineering 1997, 83 (3), 281-286. https://doi.org/10.1016/S0922-338X(97)80993-2
108Thobani, M.; Diosady, L. L., Two-phase solvent extraction of canola. J. Am. Oil Chem. Soc. 1997, 74 (3), 207-214. https://doi.org/https://doi.org/10.1007/s11746-997-0125-x
109Thobani, M.; Diosady, L. L., Pilot-scale two-phase extraction of canola. J. Am. Oil Chem. Soc. 1997, 74 (3), 201-206. https://doi.org/10.1007/s11746-997-0124-y
110Tripathi, C. S.; Allen, D. G., Kinetics of organochlorine removal from bleached kraft pulp mill effluent during biological treatment. Can. J. Chem. Eng. 1997, 75 (1), 104-112.

111Xu, L.; Diosady, L. L., Rapid method for total phenolic acid determination in rapeseed/canola meals. Food Res. Int. 1997, 30 (8), 571-574. https://doi.org/10.1016/S0963-9969(98)00022-2
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113Zheng, Y.; Allen, D. G., The effect of pre-hydrolysis of D-stage filtrate on the biotreatability of chlorinated organic compounds in bleached kraft mill effluents. Water Res. 1997, 31 (7), 1595-1600. https://doi.org/10.1016/S0043-1354(96)00401-0
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115Fedorov, A. S.; Troshina, O. Y.; Laurinavichene, T. V.; Glazer, V. M.; Babykin, M. M.; Zinchenko, V. V.; Yakunin, A. F.; Tsygankov, A. A., Regulatory effect of ammonium on the nitrogenase activity of Rhodobacter sphaeroides and Rhodobacter capsulatus is not mediated by ADP-ribosylation of the fe-protein of nitrogenase. Microbiology 1998, 67 (6), 610-615.

116Fortin, N.; Fulthorpe, R. R.; Allen, D. G.; Greer, C. W., Molecular analysis of bacterial isolates and total community DNA from kraft pulp mill effluent treatment systems. Can. J. Microbiol. 1998, 44 (6), 537-546.

117Master, E. R.; Mohn, W. W., Psychrotolerant bacteria isolated from Arctic soil that degrade polychlorinated biphenyls at low temperatures. Applied and Environmental Microbiology 1998, 64 (12), 4823-4829.

118Mohseni, M.; Allen, D. G.; Nichols, K. M., Biofiltration of α-pinene and its application to the treatment of pulp and paper air emissions. Tappi J. 1998, 81 (8), 205-211.

119Nales, M.; Butler, B. J.; Edwards, E. A., Anaerobic benzene biodegradation: A microcosm survey. Bioremediation Journal 1998, 2 (2), 125-144. https://doi.org/10.1080/10889869891214268
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124Zeikus, J. G.; Vieille, C.; Savchenko, A., Thermozymes: Biotechnology and structure-function relationships. Extremophiles 1998, 2 (3), 179-183. https://doi.org/10.1007/s007920050058
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127Diosady, L. L.; Alberti, J. O.; FitzGerald, S.; Venkatesh Mannar, M. G., Field tests for iodide in salt. Food Nutr. Bull. 1999, 20 (2), 215-220.

128Ficker, M.; Krastel, K.; Orlicky, S.; Edwards, E., Molecular characterization of a toluene-degrading methanogenic consortium. Applied and Environmental Microbiology 1999, 65 (12), 5576-5585.

129McKay, R. M. L.; La Roche, J.; Yakunin, A. F.; Durnford, D. G.; Geider, R. J., Accumulation of ferredoxin and flavodoxin in a marine diatom in response to Fe. J. Phycol. 1999, 35 (3 II), 510-519.

130Mohseni, M.; Allen, D. G., Transient performance of biofilters treating mixtures of hydrophilic and hydrophobic volatile organic compounds. Journal of the Air and Waste Management Association 1999, 49 (12), 1434-1441.

131Mollah, A. H.; Allen, D. G., Biodegradation and detoxification of wood leachate from pentachlorophenol-treated poles. Can. J. Chem. Eng. 1999, 77 (5), 942-947.

132Warrington, J. C.; Saville, B. A., The effect of a perfluorochemical emulsion on enzyme reaction stability. Can. J. Chem. Eng. 1999, 77 (5), 877-882.

133Warrington, J. C.; Saville, B. A., Tyrosinase inactivation in organic solvents. Biotechnology and Bioengineering 1999, 65 (3), 325-333. https://doi.org/10.1002/(SICI)1097-0290(19991105)65:3<325::AID-BIT10>3.0.CO;2-Q
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135Yang, H.; Allen, D. G., Model-based scale-up strategy for mycelial fermentation processes. Can. J. Chem. Eng. 1999, 77 (5), 844-854.

136Ahad, J. M. E.; Lollar, B. S.; Edwards, E. A.; Slater, G. F.; Sleep, B. E., Carbon isotope fractionation during anaerobic biodegradation of toluene: Implications for intrinsic bioremediation. Environ. Sci. Technol. 2000, 34 (5), 892-896. https://doi.org/10.1021/es990797y
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143Liao, B. Q.; Allen, D. G.; Droppo, I. G.; Leppard, G. G.; Liss, S. N., Bound water content of activated sludge and its relationship to solids retention time, floc structure, and surface properties. Water Environment Research 2000, 72 (6-7), 722-730.

144Mohseni, M.; Allen, D. G., Biofiltration of mixtures of hydrophilic and hydrophobic volatile organic compounds. Chem. Eng. Sci. 2000, 55 (9), 1545-1558. https://doi.org/10.1016/S0009-2509(99)00420-0
145Shi, G.; Gong, Y.; Savchenko, A.; Zeikus, J. G.; Xiao, B.; Ji, X.; Yan, H., Dissecting the nucleotide binding properties of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase with fluorescent 3'(2)'-o-anthraniloyladenosine 5'-triphosphate. Biochim. Biophys. Acta 2000, 1478 (2), 289-299. https://doi.org/10.1016/S0167-4838(00)00043-1
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151Konduru, R. R.; Liss, S. N.; Allen, D. G., Recalcitrant organics emerging from biological treatment of kraft mill effluents. Water Qual. Res. J. Can. 2001, 36 (4), 737-757.

152Kong, Z.; Farhana, L.; Fulthorpe, R. R.; Allen, D. G., Treatment of volatile organic compounds in a biotrickling filter under thermophilic conditions. Environ. Sci. Technol. 2001, 35 (21), 4347-4352. https://doi.org/10.1021/es010639i
153Liao, B. Q.; Allen, D. G.; Droppo, I. G.; Leppard, G. G.; Liss, S. N., Surface properties of sludge and their role in bioflocculation and settleability. Water Res. 2001, 35 (2), 339-350. https://doi.org/10.1016/S0043-1354(00)00277-3
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156Morgan-Sagastume, F.; Sleep, B. E.; Allen, D. G., Effects of biomass growth on grass pressure drop in biofilters. J. Environ. Eng. 2001, 127 (5), 388-396. https://doi.org/10.1061/(ASCE)0733-9372(2001)127:5(388)
157Savchenko, A.; Vieille, C.; Zeikus, J. G., α-Amylases and amylopullulanase from Pyrococcus furiosus. In Methods Enzymol., Academic Press: 2001; Vol. 330, pp 354-363. https://doi.org/https://doi.org/10.1016/S0076-6879(01)30388-9
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159Slater, G. F.; Lollar, B. S.; Sleep, B. E.; Edwards, E. A., Variability in carbon isotopic fractionation during biodegradation of chlorinated ethenes: Implications for field applications. Environ. Sci. Technol. 2001, 35 (5), 901-907. https://doi.org/10.1021/es001583f
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161Yakunin, A. F.; Fedorov, A. S.; Laurinavichene, T. V.; Glaser, V. M.; Egorov, N. S.; Tsygankov, A. A.; Zinchenko, V. V.; Hallenbeck, P. C., Regulation of nitrogenase in the photosynthetic bacterium Rhodobacter sphaeroides containing draTG and nifHDK genes from Rhodobacter capsulatus. Can. J. Microbiol. 2001, 47 (3), 206-212. https://doi.org/10.1139/cjm-47-3-206
162Zhang, R. G.; Skarina, T.; Katz, J. E.; Beasley, S.; Khachatryan, A.; Vyas, S.; Arrowsmith, C. H.; Clarke, S.; Edwards, A.; Joachimiak, A.; Savchenko, A., Structure of Thermotoga maritima stationary phase survival protein SurE: A novel acid phosphatase. Structure 2001, 9 (11), 1095-1106. https://doi.org/10.1016/S0969-2126(01)00675-X
163Diosady, L. L.; Alberti, J. O.; Ramcharan, K.; Venkatesh Mannar, M. G., Iodine stability in salt double-fortified with iron and iodine. Food Nutr. Bull. 2002, 23 (2), 196-207.

164Diosady, L. L.; Alberti, J. O.; Venkatesh Mannar, M. G., Microencapsulation for iodine stability in salt fortified with ferrous fumarate and potassium iodide. Food Res. Int. 2002, 35 (7), 635-642. https://doi.org/10.1016/S0963-9969(01)00166-1
165Duhamel, M.; Wehr, S. D.; Yu, L.; Rizvi, H.; Seepersad, D.; Dworatzek, S.; Cox, E. E.; Edwards, E. A., Comparison of anaerobic dechlorinating enrichment cultures maintained on tetrachloroethene, trichloroethene, cis-dichloroethene and vinyl chloride. Water Res. 2002, 36 (17), 4193-4202. https://doi.org/10.1016/S0043-1354(02)00151-3
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167Korolev, S.; Ikeguchi, Y.; Skarina, T.; Beasley, S.; Arrowsmith, C.; Edwards, A.; Joachimiak, A.; Pegg, A. E.; Savchenko, A., The crystal structure of spermidine synthase with a multisubstrate adduct inhibitor. Nat. Struct. Biol. 2002, 9 (1), 27-31. https://doi.org/10.1038/nsb737
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170Liss, S. N.; Liao, B. Q.; Droppo, I. G.; Allen, D. G.; Leppard, G. G., Effect of solids retention time on floc structure. Water Sci Technol 2002, 46 (1-2), 431-8.

171Mahadevan, R.; Doyle Iii, F. J.; Allcock, A. C., Control-relevant scheduling of polymer grade transitions. AIChE Journal 2002, 48 (8), 1754-1764. https://doi.org/10.1002/aic.690480816
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177Savchenko, A.; Vieille, C.; Kang, S.; Zeikus, J. G., Pyrococcus furiosus α-amylase is stabilized by calcium and zinc. Biochemistry 2002, 41 (19), 6193-6201. https://doi.org/10.1021/bi012106s
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182Zhang, R. G.; Kim, Y.; Skarina, T.; Beasley, S.; Laskowski, R.; Arrowsmith, C.; Edwards, A.; Joachimiak, A.; Savchenko, A., Crystal structure of Thermotoga maritima 0065, a member of the IclR transcriptional factor family. J. Biol. Chem. 2002, 277 (21), 19183-19190. https://doi.org/10.1074/jbc.M112171200
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187Dirk-Faitakis, C.; Allen, D. G., Biofiltration of cyclic air emissions of α-pinene at low and high frequencies. Journal of the Air and Waste Management Association 2003, 53 (11), 1373-1383.

188Drepper, T.; Groß, S.; Yakunin, A. F.; Hallenbeck, P. C.; Masepohl, B.; Klipp, W., Role of GlnB and GlnK in ammonium control of both nitrogenase systems in the phototrophic bacterium Rhodobacter capsulatus. Microbiology 2003, 149 (8), 2203-2212.

189Francois, E.; Wang, D. Y.; Fulthorpe, R.; Liss, S. N.; Edwards, E. A., DNA microarrays for detecting endocrine-disrupting compounds. Biotechnol. Adv. 2003, 22 (1-2), 17-26. https://doi.org/10.1016/j.biotechadv.2003.08.005
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197McGuigan, A. P.; Briggs, G. A. D.; Burlakov, V. M.; Yanaka, M.; Tsukahara, Y., An elastic–plastic shear lag model for fracture of layered coatings. Thin Solid Films 2003, 424 (2), 219-223. https://doi.org/https://doi.org/10.1016/S0040-6090(02)01124-0
198Miller, D. J.; Ouellette, N.; Evdokimova, E.; Savchenko, A.; Edwards, A.; Anderson, W. F., Crystal complexes of a predicted S-adenosylmethionine-dependent methyltransferase reveal a typical AdoMet binding domain and a substrate recognition domain. Protein Sci. 2003, 12 (7), 1432-1442. https://doi.org/10.1110/ps.0302403
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215Zhang, R. G.; Duke, N.; Laskowski, R.; Evdokimova, E.; Skarina, T.; Edwards, A.; Joachimiak, A.; Savchenko, A., Conserved protein YecM from Escherichia coli shows structural homology to metal-binding isomerases and oxygenases. Proteins: Structure, Function and Genetics 2003, 51 (2), 311-314. https://doi.org/10.1002/prot.10307
216Bray, J. E.; Marsden, R. L.; Rison, S. C. G.; Savchenko, A.; Edwards, A. M.; Thornton, J. M.; Orengo, C. A., A practical and robust sequence search strategy for structural genomics target selection. Bioinformatics 2004, 20 (14), 2288-2295. https://doi.org/10.1093/bioinformatics/bth240
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218Dinglasan, M. J. A.; Ye, Y.; Edwards, E. A.; Mabury, S. A., Fluorotelomer alcohol biodegradation yields poly- and perfluorinated acids. Environ. Sci. Technol. 2004, 38 (10), 2857-2864.

219Duhamel, M.; Mo, K.; Edwards, E. A., Characterization of a highly enriched Dehalococcoides-containing culture that grows on vinyl chloride and trichloroethene. Applied and Environmental Microbiology 2004, 70 (9), 5538-5545. https://doi.org/10.1128/AEM.70.9.5538-5545.2004
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226Miller, M. J.; Allen, D. G., Transport of hydrophobic pollutants through biofilms in biofilters. Chem. Eng. Sci. 2004, 59 (17), 3515-3525. https://doi.org/10.1016/j.ces.2004.05.011
227Oshinowo, T.; Diosady, L.; Yusufali, R.; Laleye, L., Stability of salt double-fortified with ferrous fumarate and potassium iodate or iodide under storage and distribution conditions in Kenya. Food Nutr. Bull. 2004, 25 (3), 264-270.

228Proudfoot, M.; Kuznetsova, E.; Brown, G.; Rao, N. N.; Kitagawa, M.; Mori, H.; Savchenko, A.; Yakunin, A. F., General enzymatic screens identify three new nucleotidases in Escherichia coli: Biochemical characterization of SurE, YfbR, and YjjG. J. Biol. Chem. 2004, 279 (52), 54687-54694. https://doi.org/10.1074/jbc.M411023200
229Sanishvili, R.; Beasley, S.; Skarina, T.; Glesne, D.; Joachimiak, A.; Edwards, A.; Savchenko, A., The crystal structure of Escherichia coli MoaB suggests a probable role in molybdenum cofactor synthesis. J. Biol. Chem. 2004, 279 (40), 42139-42146. https://doi.org/10.1074/jbc.M407694200
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231Savchenko, A.; Skarina, T.; Evdokimova, E.; Watson, J. D.; Laskowski, R.; Arrowsmith, C. H.; Edwards, A. M.; Joachimiak, A.; Zhang, R. G., X-Ray crystal structure of CutA from Thermotoga maritima at 1.4 Å Resolution. Proteins: Structure, Function and Genetics 2004, 54 (1), 162-165. https://doi.org/10.1002/prot.10585
232Saville, B. A.; Khavkine, M.; Seetharam, G.; Marandi, B.; Zuo, Y. L., Characterization and performance of immobilized amylase and cellulase. Applied Biochemistry and Biotechnology - Part A Enzyme Engineering and Biotechnology 2004, 113 (1-3), 251-259. https://doi.org/10.1385/ABAB:113:1-3:251
233Waller, A. S.; Cox, E. E.; Edwards, E. A., Perchlorate-reducing microorganisms isolated from contaminated sites. Environ. Microbiol. 2004, 6 (5), 517-527. https://doi.org/10.1111/j.1462-2920.2004.00598.x
234Wang, D. Y.; Fulthorpe, R.; Liss, S. N.; Edwards, E. A., Identification of estrogen-responsive genes by complementary deoxyribonucleic acid microarray and characterization of a novel early estrogen-induced gene: EEIG1. Mol. Endocrinol. 2004, 18 (2), 402-411. https://doi.org/10.1210/me.2003-0202
235Wang, D. Y.; McKague, B.; Liss, S. N.; Edwards, E. A., Gene expression profiles for detecting and distinguishing potential endocrine-disrupting compounds in environmental samples. Environ. Sci. Technol. 2004, 38 (23), 6396-6406. https://doi.org/10.1021/es049235r
236Wiback, S. J.; Mahadevan, R.; Palsson, B. Ø., Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: The Escherichia coli spectrum. Biotechnology and Bioengineering 2004, 86 (3), 317-331. https://doi.org/10.1002/bit.20011
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240Chartrand, M. M. G.; Waller, A.; Mattes, T. E.; Elsner, M.; Lacrampe-Couloume, G.; Gossett, J. M.; Edwards, E. A.; Lollar, B. S., Carbon isotopic fractionation during aerobic vinyl chloride degradation. Environ. Sci. Technol. 2005, 39 (4), 1064-1070. https://doi.org/10.1021/es0492945
241Chen, S.; Yakunin, A. F.; Proudfoot, M.; Kim, R.; Kim, S. H., Structural and functional characterization of a 5,10- methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087). Proteins: Structure, Function and Genetics 2005, 61 (2), 433-443. https://doi.org/10.1002/prot.20591
242Cuff, M. E.; Miller, D. J.; Korolev, S.; Xu, X.; Anderson, W. F.; Edwards, A.; Joachimiak, A.; Savchenko, A., Crystal structure of a predicted precorrin-8x methylmutase from Thermoplasma acidophilum. Proteins: Structure, Function and Genetics 2005, 58 (3), 751-754. https://doi.org/10.1002/prot.20022
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244Dirk-Faitakis, C.; Allen, D. G., Development and simulation studies of an unsteady state biofilter model for the treatment of cyclic air emissions of an α-pinene gas stream. Journal of Chemical Technology and Biotechnology 2005, 80 (7), 737-745. https://doi.org/10.1002/jctb.1200
245Dobrovetsky, E.; Ming, L. L.; Andorn-Broza, R.; Khutoreskaya, G.; Bray, J. E.; Savchenko, A.; Arrowsmith, C. H.; Edwards, A. M.; Koth, C. M., High-throughput production of prokaryotic membrane proteins. Journal of Structural and Functional Genomics 2005, 6 (1), 33-50. https://doi.org/10.1007/s10969-005-1363-5
246Famili, I.; Mahadevan, R.; Palsson, B. O., k-Cone analysis: Determining all candidate values for kinetic parameters on a network scale. Biophys. J. 2005, 88 (3), 1616-1625. https://doi.org/10.1529/biophysj.104.050385
247Gadkar, K. G.; Doyle Iii, F. J.; Edwards, J. S.; Mahadevan, R., Estimating optimal profiles of genetic alterations using constraint-based models. Biotechnology and Bioengineering 2005, 89 (2), 243-251. https://doi.org/10.1002/bit.20349
248Ghodsvali, A.; Khodaparast, M. H. H.; Vosoughi, M.; Diosady, L. L., Preparation of canola protein materials using membrane technology and evaluation of meals functional properties. Food Res. Int. 2005, 38 (2), 223-231. https://doi.org/10.1016/j.foodres.2004.10.007
249Kuznetsova, E.; Proudfoot, M.; Sanders, S. A.; Reinking, J.; Savchenko, A.; Arrowsmith, C. H.; Edwards, A. M.; Yakunin, A. F., Enzyme genomics: Application of general enzymatic screens to discover new enzymes. FEMS Microbiol. Rev. 2005, 29 (2), 263-279. https://doi.org/10.1016/j.femsre.2004.12.006
250Mahadevan, R.; Burgard, A. P.; Famili, I.; Van Dien, S.; Schilling, C. H., Applications of metabolic modeling to drive bioprocess development for the production of value-added chemicals. Biotechnology and Bioprocess Engineering 2005, 10 (5), 408-417.

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252Master, E. R.; McKinlay, J. J.; Stewart, G. R.; Mohn, W. W., Biphenyl uptake by psychrotolerant Pseudomonas sp. strain Cam-1 and mesophilic Burkholderia sp. strain LB400. Can. J. Microbiol. 2005, 51 (5), 399-404. https://doi.org/10.1139/w05-013
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254Miller, M. J.; Allen, D. G., Modelling transport and degradation of hydrophobic pollutants in biofilter biofilms. Chem. Eng. J. 2005, 113 (2-3), 197-204. https://doi.org/10.1016/j.cej.2005.03.008
255Mohseni, M.; Koh, L. H.; Kuhn, D. C. S.; Allen, D. G., Ultraviolet photooxidation for the biodegradability enhancement of airborne o-xylene. J. Environ. Eng. Sci. 2005, 4 (4), 279-286. https://doi.org/10.1139/s04-060
256Morgan-Sagastume, F.; Allen, D. G., Activated sludge deflocculation under temperature upshifts from 30 to 45°C. Water Res. 2005, 39 (6), 1061-1074. https://doi.org/10.1016/j.watres.2004.12.027
257Morgan-Sagastume, F.; Allen, D. G., Physicochemical properties and stability of activated sludge flocs under temperature upshifts from 30 to 45°C. Journal of Colloid and Interface Science 2005, 281 (1), 136-145. https://doi.org/10.1016/j.jcis.2004.08.026
258Morrill, P. L.; Lacrampe-Couloume, G.; Slater, G. F.; Sleep, B. E.; Edwards, E. A.; McMaster, M. L.; Major, D. W.; Lollar, B. S., Quantifying chlorinated ethene degradation during reductive dechlorination at Kelly AFB using stable carbon isotopes. J. Contam. Hydrol. 2005, 76 (3-4), 279-293. https://doi.org/10.1016/j.jconhyd.2004.11.002
259Qian, S. X.; Jancarik, J.; Lou, Y.; Kuznetsova, K.; Yakunin, A. F.; Yokota, H.; Adams, P.; Kim, R.; Kim, S. H., Crystal structures of a phosphotransacetylase from Bacillus subtilis and its complex with acetyl phosphate. Journal of Structural and Functional Genomics 2005, 6 (4), 269-279. https://doi.org/10.1007/s10969-005-9001-9
260Sanders, D. A. R.; Walker, J. R.; Skarina, T.; Savchenko, A., The X-ray crystal structure of PA3566 from Pseudomonas aureginosa at 1.8 Å resolution. Proteins: Structure, Function and Genetics 2005, 61 (1), 209-212. https://doi.org/10.1002/prot.20503
261Savchenko, A.; Krogatt, N.; Cort, J. R.; Evdokimova, E.; Lew, J. M.; Yee, A. A.; Sánchez-Pulido, L.; Andrade, M. A.; Bochkarev, A.; Watson, J. D.; Kennedy, M. A.; Greenblatt, J.; Hughes, T.; Arrowsmith, C. H.; Rommens, J. M.; Edwards, A. M., The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism. J. Biol. Chem. 2005, 280 (19), 19213-19220. https://doi.org/10.1074/jbc.M414421200
262Scott, H. E.; Liss, S. N.; Farnood, R. R.; Allen, D. G., Ultraviolet disinfection of sequencing batch reactor effluent: A study of physicochemical properties of microbial floc and disinfection performance. J. Environ. Eng. Sci. 2005, 4 (SUPPL. 1), S65-S74. https://doi.org/10.1139/s04-076
263Sosnik, A.; Leung, B.; McGuigan, A. P.; Sefton, M. V., Collagen/poloxamine hydrogels: Cytocompatibility of embedded HepG2 cells and surface-attached endothelial cells. Tissue Eng. 2005, 11 (11-12), 1807-1816. https://doi.org/10.1089/ten.2005.11.1807
264Sun, W.; Xu, X.; Pavlova, M.; Edwards, A. M.; Joachimiak, A.; Savchenko, A.; Christendat, D., The crystal structure of a novel SAM-dependent methyltransferase PH1915 from Pyrococcus horikoshii. Protein Sci. 2005, 14 (12), 3121-3128. https://doi.org/10.1110/ps.051821805
265Ulrich, A. C.; Beller, H. R.; Edwards, E. A., Metabolites detected during biodegradation of 13C 6-benzene in nitrate-reducing and methanogenic enrichment cultures. Environ. Sci. Technol. 2005, 39 (17), 6681-6691. https://doi.org/10.1021/es050294u
266Waller, A. S.; Krajmalnik-Brown, R.; Löffler, F. E.; Edwards, E. A., Multiple reductive-dehalogenase-homologous genes are simultaneously transcribed during dechlorination by Dehalococcoides-containing cultures. Applied and Environmental Microbiology 2005, 71 (12), 8257-8264. https://doi.org/10.1128/AEM.71.12.8257-8264.2005
267Yang, H.; Allen, D. G., Potential improvement in biofilter design through the use of heterogeneous packing and a conical biofilter geometry. J. Environ. Eng. 2005, 131 (4), 504-511. https://doi.org/10.1061/(ASCE)0733-9372(2005)131:4(504)
268Yee, A. A.; Savchenko, A.; Ignachenko, A.; Lukin, J.; Xu, X.; Skarina, T.; Evdokimova, E.; Liu, C. S.; Semesi, A.; Guido, V.; Edwards, A. M.; Arrowsmith, C. H., NMR and X-ray crystallography, complementary tools in structural proteomics of small proteins. Journal of the American Chemical Society 2005, 127 (47), 16512-16517. https://doi.org/10.1021/ja053565+
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271Dinglasan-Panlilio, M. J.; Dworatzek, S.; Mabury, S.; Edwards, E., Microbial oxidation of 1,2-dichloroethane under anoxic conditions with nitrate as electron acceptor in mixed and pure cultures. FEMS Microbiol. Ecol. 2006, 56 (3), 355-364. https://doi.org/10.1111/j.1574-6941.2006.00077.x
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273Duhamel, M.; Edwards, E. A., Microbial composition of chlorinated ethene-degrading cultures dominated by Dehalococcoides. FEMS Microbiol. Ecol. 2006, 58 (3), 538-549. https://doi.org/10.1111/j.1574-6941.2006.00191.x
274Gadkar, K. G.; Mahadevan, R.; Doyle Iii, F. J., Optimal genetic manipulations in batch bioreactor control. Automatica 2006, 42 (10), 1723-1733. https://doi.org/10.1016/j.automatica.2006.05.004
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276Gonzalez, C. F.; Proudfoot, M.; Brown, G.; Korniyenko, Y.; Mori, H.; Savchenko, A. V.; Yakunin, A. F., Molecular basis of formaldehyde detoxification: Characterization of two S-formylglutathione hydrolases from Escherichia coli, FrmB and YeiG. J. Biol. Chem. 2006, 281 (20), 14514-14522. https://doi.org/10.1074/jbc.M600996200
277Gorelik, M.; Lunin, V. V.; Skarina, T.; Savchenko, A., Structural characterization of GntR/HutC family signaling domain. Protein Sci. 2006, 15 (6), 1506-1511. https://doi.org/10.1110/ps.062146906
278Grostern, A.; Edwards, E. A., A 1,1,1-trichloroethane-degrading anaerobic mixed microbial culture enhances biotransformation of mixtures of chlorinated ethenes and ethanes. Applied and Environmental Microbiology 2006, 72 (12), 7849-7856. https://doi.org/10.1128/AEM.01269-06
279Grostern, A.; Edwards, E. A., Growth of Dehalobacter and Dehalococcoides spp. during degradation of chlorinated ethanes. Applied and Environmental Microbiology 2006, 72 (1), 428-436. https://doi.org/10.1128/AEM.72.1.428-436.2006
280Kuznetsova, E.; Proudfoot, M.; Gonzalez, C. F.; Brown, G.; Omelchenko, M. V.; Borozan, I.; Carmel, L.; Wolf, Y. I.; Mori, H.; Savchenko, A. V.; Arrowsmith, C. H.; Koonin, E. V.; Edwards, A. M.; Yakunin, A. F., Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family. J. Biol. Chem. 2006, 281 (47), 36149-36161. https://doi.org/10.1074/jbc.M605449200
281Liu, J. R.; Liu, C. T.; Edwards, E. A.; Liss, S. N., Effect of phosphorus limitation on microbial floc structure and gene expression in activated sludge. Water Sci. Technol. 2006, 54 (1), 247-255. https://doi.org/10.2166/wst.2006.393
282Löffler, F. E.; Edwards, E. A., Harnessing microbial activities for environmental cleanup. Curr. Opin. Biotechnol. 2006, 17 (3), 274-284. https://doi.org/10.1016/j.copbio.2006.05.001
283Mahadevan, R.; Bond, D. R.; Butler, J. E.; Esteve-Nuñez, A.; Coppi, M. V.; Palsson, B. O.; Schilling, C. H.; Lovley, D. R., Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling. Applied and Environmental Microbiology 2006, 72 (2), 1558-1568. https://doi.org/10.1128/AEM.72.2.1558-1568.2006
284Mancini, S. A.; Hirschorn, S. K.; Elsner, M.; Lacrampe-Couloume, G.; Sleep, B. E.; Edwards, E. A.; Lollar, B. S., Effects of trace element concentration on enzyme controlled stable isotope fractionation during aerobic biodegradation of toluene. Environ. Sci. Technol. 2006, 40 (24), 7675-7681. https://doi.org/10.1021/es061363n
285Marnoch, R.; Diosady, L. L., Production of mustard protein isolates from oriental mustard seed (Brassica juncea L.). J. Am. Oil Chem. Soc. 2006, 83 (1), 65-69. https://doi.org/https://doi.org/10.1007/s11746-006-1177-z
286McGuigan, A. P.; Sefton, M. V., Vascularized organoid engineered by modular assembly enables blood perfusion. Proceedings of the National Academy of Sciences of the United States of America 2006, 103 (31), 11461-11466. https://doi.org/10.1073/pnas.0602740103
287Morrill, P. L.; Sleep, B. E.; Slater, G. F.; Edwards, E. A.; Lollar, B. S., Evaluation of isotopic enrichment factors for the biodegradation of chlorinated ethenes using a parameter estimation model: Toward an improved quantification of biodegradation. Environ. Sci. Technol. 2006, 40 (12), 3886-3892. https://doi.org/10.1021/es051513e
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583Lücker, P. B.; Javaherian, S.; Soleas, J. P.; Halverson, D.; Zandstra, P. W.; McGuigan, A. P., A microgroove patterned multiwell cell culture plate for high-throughput studies of cell alignment. Biotechnology and Bioengineering 2014, 111 (12), 2537-2548. https://doi.org/10.1002/bit.25298
584Luo, F.; Gitiafroz, R.; Devine, C. E.; Gong, Y.; Hug, L. A.; Raskin, L.; Edwards, E. A., Metatranscriptome of an anaerobic benzene-degrading, nitrate-reducing enrichment culture reveals involvement of carboxylation in benzene ring activation. Applied and Environmental Microbiology 2014, 80 (14), 4095-4107. https://doi.org/10.1128/AEM.00717-14
585Meyer, T.; Edwards, E. A., Anaerobic digestion of pulp and paper mill wastewater and sludge. Water Res. 2014, 65, 321-349. https://doi.org/10.1016/j.watres.2014.07.022
586Meziane-Cherif, D.; Stogios, P. J.; Evdokimova, E.; Savchenko, A.; Courvalin, P., Structural basis for the evolution of vancomycin resistance D,D-peptidases. Proceedings of the National Academy of Sciences of the United States of America 2014, 111 (16), 5872-5877. https://doi.org/10.1073/pnas.1402259111
587Paz, A. C.; Soleas, J.; Poon, J. C. H.; Trieu, D.; Waddell, T. K.; McGuigan, A. P., Challenges and opportunities for tissue-engineering polarized epithelium. Tissue Engineering - Part B: Reviews 2014, 20 (1), 56-72. https://doi.org/10.1089/ten.teb.2013.0144
588Pérez-De-Mora, A.; Zila, A.; McMaster, M. L.; Edwards, E. A., Bioremediation of chlorinated ethenes in fractured bedrock and associated changes in dechlorinating and nondechlorinating microbial populations. Environ. Sci. Technol. 2014, 48 (10), 5770-5779. https://doi.org/10.1021/es404122y
589Pourbafrani, M.; McKechnie, J.; Shen, T.; Saville, B. A.; Maclean, H. L., Impacts of pre-treatment technologies and co-products on greenhouse gas emissions and energy use of lignocellulosic ethanol production. Journal of Cleaner Production 2014, 78, 104-111. https://doi.org/10.1016/j.jclepro.2014.04.050
590Prapakornwiriya, N.; Diosady, L. L., Recovery of Sinapic Acid from the Waste Effluent of Mustard Protein Isolation by Ion Exchange Chromatography. J. Am. Oil Chem. Soc. 2014, 91 (2), 357-362. https://doi.org/https://doi.org/10.1007/s11746-013-2366-1
591Schnurr, P. J.; Espie, G. S.; Allen, D. G., The effect of light direction and suspended cell concentrations on algal biofilm growth rates. Applied Microbiology and Biotechnology 2014, 98 (20), 8553-8562. https://doi.org/10.1007/s00253-014-5964-4
592Sinichi, S.; Diosady, L. L., Isopropyl Alcohol Extraction of De-hulled Yellow Mustard Flour. J. Am. Oil Chem. Soc. 2014, 91 (12), 2143-2153. https://doi.org/https://doi.org/10.1007/s11746-014-2556-5
593Stogios, P. J.; Kuhn, M. L.; Evdokimova, E.; Courvalin, P.; Anderson, W. F.; Savchenko, A., Potential for reduction of streptogramin a resistance revealed by structural analysis of acetyltransferase VatA. Antimicrobial Agents and Chemotherapy 2014, 58 (12), 7083-7092. https://doi.org/10.1128/AAC.03743-14
594Suzuki, H.; Vuong, T. V.; Gong, Y.; Chan, K.; Ho, C. Y.; Master, E. R.; Kondo, A., Sequence diversity and gene expression analyses of expansin-related proteins in the white-rot basidiomycete, Phanerochaete carnosa. Fungal Genetics and Biology 2014, 72, 115-123. https://doi.org/10.1016/j.fgb.2014.05.008
595Tabtabaei, S.; Boocock, D. G. B.; Diosady, L. L., Biodiesel Feedstock from Emulsions Produced by Aqueous Processing of Yellow Mustard. J. Am. Oil Chem. Soc. 2014, 91 (7), 1269-1282. https://doi.org/https://doi.org/10.1007/s11746-014-2448-8
596Trieu, D.; Waddell, T. K.; McGuigan, A. P., A microfluidic device to apply shear stresses to polarizing ciliated airway epithelium using air flow. Biomicrofluidics 2014, 8 (6). https://doi.org/10.1063/1.4901930
597Vuong, T. V.; Master, E. R., Fusion of a xylan-binding module to gluco-oligosaccharide oxidase increases activity and promotes stable immobilization. PLoS One 2014, 9 (4), e95170. https://doi.org/10.1371/journal.pone.0095170
598Wang, W.; Mai-Gisondi, G.; Stogios, P. J.; Kaur, A.; Xu, X.; Cui, H.; Turunen, O.; Savchenko, A.; Master, E. R., Elucidation of the molecular basis for arabinoxylan-debranching activity of a thermostable family GH62 α-L-arabinofuranosidase from Streptomyces thermoviolaceus. Applied and Environmental Microbiology 2014, 80 (17), 5317-5329. https://doi.org/10.1128/AEM.00685-14
599Alcaide, M.; Stogios, P. J.; Lafraya, A.; Tchigvintsev, A.; Flick, R.; Bargiela, R.; Chernikova, T. N.; Reva, O. N.; Hai, T.; Leggewie, C. C.; Katzke, N.; La Cono, V.; Matesanz, R.; Jebbar, M.; Jaeger, K. E.; Yakimov, M. M.; Yakunin, A. F.; Golyshin, P. N.; Golyshina, O. V.; Savchenko, A.; Ferrer, M., Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats. Environ. Microbiol. 2015, 17 (2), 332-345. https://doi.org/10.1111/1462-2920.12660
600Alcaide, M.; Tchigvintsev, A.; Martínez-Martínez, M.; Popovic, A.; Reva, O. N.; Lafraya, Á.; Bargiela, R.; Nechitaylo, T. Y.; Matesanz, R.; Cambon-Bonavita, M. A.; Jebbar, M.; Yakimov, M. M.; Savchenko, A.; Golyshina, O. V.; Yakunin, A. F.; Golyshin, P. N.; Ferrer, M., Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics. Applied and Environmental Microbiology 2015, 81 (6), 2125-2136. https://doi.org/10.1128/AEM.03387-14
601Beloglazova, N.; Kuznedelov, K.; Flick, R.; Datsenko, K. A.; Brown, G.; Popovic, A.; Lemak, S.; Semenova, E.; Severinov, K.; Yakunin, A. F., CRISPR RNA binding and DNA target recognition by purified Cascade complexes from Escherichia coli. Nucleic Acids Res. 2015, 43 (1), 530-543. https://doi.org/10.1093/nar/gku1285
602Beloglazova, N.; Lemak, S.; Flick, R.; Yakunin, A. F., Analysis of nuclease activity of Cas1 proteins against complex DNA substrates. Methods Mol. Biol. 2015, 1311, 251-64. https://doi.org/10.1007/978-1-4939-2687-9_16
603Bonilla, S.; Tran, H.; Allen, D. G., Enhancing pulp and paper mill biosludge dewaterability using enzymes. Water Res. 2015, 68, 692-700. https://doi.org/10.1016/j.watres.2014.10.057
604Couturier, M.; Navarro, D.; Chevret, D.; Henrissat, B.; Piumi, F.; Ruiz-Dueñas, F. J.; Martinez, A. T.; Grigoriev, I. V.; Riley, R.; Lipzen, A.; Berrin, J. G.; Master, E. R.; Rosso, M. N., Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus. Biotechnol Biofuels 2015, 8, 216. https://doi.org/10.1186/s13068-015-0407-8
605Cox, G.; Stogios, P. J.; Savchenko, A.; Wright, G. D., Structural and molecular basis for resistance to aminoglycoside antibiotics by the adenylyltransferase ANT(2″)-Ia. mBio 2015, 6 (1). https://doi.org/10.1128/mBio.02180-14
606Crowe, A. M.; Stogios, P. J.; Casabon, I.; Evdokimova, E.; Savchenko, A.; Eltis, L. D., Structural and functional characterization of a ketosteroid transcriptional regulator of Mycobacterium tuberculosis. J. Biol. Chem. 2015, 290 (2), 872-882. https://doi.org/10.1074/jbc.M114.607481
607D'Arcangelo, E.; McGuigan, A. P., Micropatterning strategies to engineer controlled cell and tissue architecture in vitro. BioTechniques 2015, 58 (1), 13-23. https://doi.org/10.2144/000114245
608Dumitrache, A.; Eberl, H. J.; Allen, D. G.; Wolfaardt, G. M., Mathematical modeling to validate on-line CO2 measurements as a metric for cellulolytic biofilm activity in continuous-flow bioreactors. Biochem. Eng. J. 2015, 101, 55-67. https://doi.org/10.1016/j.bej.2015.04.022
609Ebrahim, A.; Almaas, E.; Bauer, E.; Bordbar, A.; Burgard, A. P.; Chang, R. L.; Dräger, A.; Famili, I.; Feist, A. M.; Fleming, R. M. T.; Fong, S. S.; Hatzimanikatis, V.; Holder, A.; Hucka, M.; Hyduke, D.; Jamshidi, N.; Lee, S. Y.; Le Novère, N.; Lerman, J. A.; Lewis, N. E.; Ma, D.; Mahadevan, R.; Maranas, C.; Nagarajan, H.; Navid, A.; Nielsen, J.; Nielsen, L. K.; Nogales, J.; Noronha, A.; Pal, C.; Palsson, B. O.; Papin, J. A.; Patil, K. R.; Price, N. D.; Reed, J. L.; Saunders, M.; Senger, R. S.; Sonnenschein, N.; Sun, Y.; Thiele, I., Do genome-scale models need exact solvers or clearer standards? Mol. Syst. Biol. 2015, 11 (10), 831. https://doi.org/10.15252/msb.20156157
610Foumani, M.; Vuong, T. V.; MacCormick, B.; Master, E. R., Enhanced Polysaccharide Binding and Activity on Linear β-Glucans through Addition of Carbohydrate-Binding Modules to Either Terminus of a Glucooligosaccharide Oxidase. PLoS One 2015, 10 (5), e0125398. https://doi.org/10.1371/journal.pone.0125398
611Gandla, M. L.; Derba-Maceluch, M.; Liu, X.; Gerber, L.; Master, E. R.; Mellerowicz, E. J.; Jönsson, L. J., Expression of a fungal glucuronoyl esterase in Populus: Effects on wood properties and saccharification efficiency. Phytochemistry 2015, 112 (1), 210-220. https://doi.org/10.1016/j.phytochem.2014.06.002
612Gaona, A.; Lawryshyn, Y.; Saville, B., The effect of fed-batch operation and rotational speed on high-solids enzymatic hydrolysis of hardwood substrates. Industrial Biotechnology 2015, 11 (5), 277-283. https://doi.org/10.1089/ind.2014.0031
613Gawand, P.; Said Abukar, F.; Venayak, N.; Partow, S.; Motter, A. E.; Mahadevan, R., Sub-optimal phenotypes of double-knockout mutants of Escherichia coli depend on the order of gene deletions. Integrative biology : quantitative biosciences from nano to macro 2015, 7 (8), 930-939. https://doi.org/10.1039/c5ib00096c
614Genin, S. N.; Aitchison, J. S.; Allen, D. G., Novel waveguide reactor design for enhancing algal biofilm growth. Algal Research 2015, 12, 529-538. https://doi.org/10.1016/j.algal.2015.10.013
615Gold, N. D.; Gowen, C. M.; Lussier, F.-X.; Cautha, S. C.; Mahadevan, R.; Martin, V. J. J., Metabolic engineering of a tyrosine-overproducing yeast platform using targeted metabolomics. Microbial Cell Factories 2015, 14 (1), 73. https://doi.org/10.1186/s12934-015-0252-2
616Halavaty, A. S.; Rich, R. L.; Chen, C.; Joo, J. C.; Minasov, G.; Dubrovska, I.; Winsor, J. R.; Myszka, D. G.; Duban, M.; Shuvalova, L.; Yakunin, A. F.; Anderson, W. F., Structural and functional analysis of betaine aldehyde dehydrogenase from Staphylococcus aureus. Acta Crystallogr. Sect. D. Biol. Crystallogr. 2015, 71, 1159-1175. https://doi.org/10.1107/S1399004715004228
617Hug, L. A.; Edwards, E. A., Corrigendum: Diversity of reductive dehalogenase genes from environmental samples and enrichment cultures identified with degenerate primer PCR screens. Front. Microbiol. 2015, 6, 30. https://doi.org/10.3389/fmicb.2015.00030
618Huynh, E.; Leung, B. Y. C.; Helfield, B. L.; Shakiba, M.; Gandier, J. A.; Jin, C. S.; Master, E. R.; Wilson, B. C.; Goertz, D. E.; Zheng, G., In situ conversion of porphyrin microbubbles to nanoparticles for multimodality imaging. Nature Nanotechnology 2015, 10 (4), 325-332. https://doi.org/10.1038/nnano.2015.25
619Islam, M. A.; Zengler, K.; Edwards, E. A.; Mahadevan, R.; Stephanopoulos, G., Investigating Moorella thermoacetica metabolism with a genome-scale constraint-based metabolic model. Integrative biology : quantitative biosciences from nano to macro 2015, 7 (8), 869-882. https://doi.org/10.1039/c5ib00095e
620Javaherian, S.; D'Arcangelo, E.; Slater, B.; Zulueta-Coarasa, T.; Fernandez-Gonzalez, R.; McGuigan, A. P., An in vitro model of tissue boundary formation for dissecting the contribution of different boundary forming mechanisms. Integrative biology : quantitative biosciences from nano to macro 2015, 7 (3), 298-312. https://doi.org/10.1039/c4ib00272e
621Kaur, A. P.; Nocek, B. P.; Xu, X.; Lowden, M. J.; Leyva, J. F.; Stogios, P. J.; Cui, H.; Di Leo, R.; Powlowski, J.; Tsang, A.; Savchenko, A., Functional and structural diversity in GH62 α-L-arabinofuranosidases from the thermophilic fungus Scytalidium thermophilum. Microb. Biotechnol. 2015, 8 (3), 419-433. https://doi.org/10.1111/1751-7915.12168
622Klamt, S.; Mahadevan, R., On the feasibility of growth-coupled product synthesis in microbial strains. Metab. Eng. 2015, 30, 166-178. https://doi.org/10.1016/j.ymben.2015.05.006
623Kocur, C. M. D.; Lomheim, L.; Boparai, H. K.; Chowdhury, A. I. A.; Weber, K. P.; Austrins, L. M.; Edwards, E. A.; Sleep, B. E.; O'Carroll, D. M., Contributions of abiotic and biotic dechlorination following carboxymethyl cellulose stabilized nanoscale zero valent iron injection. Environ. Sci. Technol. 2015, 49 (14), 8648-8656. https://doi.org/10.1021/acs.est.5b00719
624Kuznetsova, E.; Nocek, B.; Brown, G.; Makarova, K. S.; Flick, R.; Wolf, Y. I.; Khusnutdinova, A.; Evdokimova, E.; Jin, K.; Tan, K.; Hanson, A. D.; Hasnain, G.; Zallot, R.; De Crécy-Lagard, V.; Babu, M.; Savchenko, A.; Joachimiak, A.; Edwards, A. M.; Koonin, E. V.; Yakunin, A. F., Functional diversity of haloacid dehalogenase superfamily phosphatases from Saccharomyces cerevisiae: Biochemical, structural, and evolutionary insights. J. Biol. Chem. 2015, 290 (30), 18678-18698. https://doi.org/10.1074/jbc.M115.657916
625Liang, X.; Molenda, O.; Tang, S.; Edwards, E. A., Identity and substrate specificity of reductive dehalogenases expressed in Dehalococcoides-containing enrichment cultures maintained on different chlorinated ethenes. Applied and Environmental Microbiology 2015, 81 (14), 4626-4633. https://doi.org/10.1128/AEM.00536-15
626Littunen, K.; Kilpeläinen, P.; Junka, K.; Sipponen, M.; Master, E. R.; Seppälä, J., Effect of xylan structure on reactivity in graft copolymerization and subsequent binding to cellulose. Biomacromolecules 2015, 16 (4), 1102-1111. https://doi.org/10.1021/bm501732b
627Luk, J. M.; Saville, B. A.; MacLean, H. L., Life cycle air emissions impacts and ownership costs of light-duty vehicles using natural gas as a primary energy source. Environ. Sci. Technol. 2015, 49 (8), 5151-5160. https://doi.org/10.1021/es5045387
628Mahadevan, R.; Von Kamp, A.; Klamt, S., Genome-scale strain designs based on regulatory minimal cut sets. Bioinformatics 2015, 31 (17), 2844-2851. https://doi.org/10.1093/bioinformatics/btv217
629Mai-Gisondi, G.; Turunen, O.; Pastinen, O.; Pahimanolis, N.; Master, E. R., Enhancement of acetyl xylan esterase activity on cellulose acetate through fusion to a family 3 cellulose binding module. Enzyme and Microbial Technology 2015, 79-80, 27-33. https://doi.org/10.1016/j.enzmictec.2015.07.001
630Makarova, K. S.; Wolf, Y. I.; Alkhnbashi, O. S.; Costa, F.; Shah, S. A.; Saunders, S. J.; Barrangou, R.; Brouns, S. J. J.; Charpentier, E.; Haft, D. H.; Horvath, P.; Moineau, S.; Mojica, F. J. M.; Terns, R. M.; Terns, M. P.; White, M. F.; Yakunin, A. F.; Garrett, R. A.; Van Der Oost, J.; Backofen, R.; Koonin, E. V., An updated evolutionary classification of CRISPR-Cas systems. Nature Reviews Microbiology 2015, 13 (11), 722-736. https://doi.org/10.1038/nrmicro3569
631McKechnie, J.; Pourbafrani, M.; Saville, B. A.; MacLean, H. L., Environmental and financial implications of ethanol as a bioethylene feedstock versus as a transportation fuel. Environmental Research Letters 2015, 10 (12). https://doi.org/10.1088/1748-9326/10/12/124018
632McKechnie, J.; Pourbafrani, M.; Saville, B. A.; MacLean, H. L., Exploring impacts of process technology development and regional factors on life cycle greenhouse gas emissions of corn stover ethanol. Renewable Energy 2015, 76, 726-734. https://doi.org/10.1016/j.renene.2014.11.088
633Meyer, T.; Edwards, E. A., Corrigendum to "Anaerobic digestion of pulp and paper mill wastewater and sludge" [Water Res. 65 (2014) 321-349]. Water Res. 2015, 68, 849. https://doi.org/10.1016/j.watres.2014.10.059
634Meziane-Cherif, D.; Stogios, P. J.; Evdokimova, E.; Egorova, O.; Savchenko, A.; Courvalin, P., Structural and functional adaptation of vancomycin resistance vant serine racemases. mBio 2015, 6 (4). https://doi.org/10.1128/mBio.00806-15
635Morar, M.; Evdokimova, E.; Chang, C.; Ensminger, A. W.; Savchenko, A., Crystal structure of the Legionella pneumophila lem 10 effector reveals a new member of the HD protein superfamily. Proteins: Structure, Function and Bioinformatics 2015, 83 (12), 2319-2325. https://doi.org/10.1002/prot.24933
636Mulder, D. T.; McPhee, J. B.; Reid-Yu, S. A.; Stogios, P. J.; Savchenko, A.; Coombes, B. K., Multiple histidines in the periplasmic domain of the Salmonella enterica sensor kinase SsrA enhance signaling in response to extracellular acidification. Mol. Microbiol. 2015, 95 (4), 678-691. https://doi.org/10.1111/mmi.12895
637Nakayasu, E. S.; Sydor, M. A.; Brown, R. N.; Sontag, R. L.; Sobreira, T. J. P.; Slysz, G. W.; Humphrys, D. R.; Skarina, T.; Onoprienko, O.; Di Leo, R.; Deatherage Kaiser, B. L.; Li, J.; Ansong, C.; Cambronne, E. D.; Smith, R. D.; Savchenko, A.; Adkins, J. N., Identification of Salmonella typhimurium deubiquitinase SseL substrates by immunoaffinity enrichment and quantitative proteomic analysis. J. Proteome Res. 2015, 14 (9), 4029-4038. https://doi.org/10.1021/acs.jproteome.5b00574
638Namazi, A. B.; Allen, D. G.; Jia, C. Q., Effect of chemical components in white liquor on carbon activation. Can. J. Chem. Eng. 2015, 93 (10), 1705-1712. https://doi.org/10.1002/cjce.22281
639Namazi, A. B.; Allen, D. G.; Jia, C. Q., Microwave-assisted pyrolysis and activation of pulp mill sludge. Biomass Bioenergy 2015, 73, 217-224. https://doi.org/10.1016/j.biombioe.2014.12.023
640Namazi, A. B.; Allen, D. G.; Jia, C. Q., Probing microwave heating of lignocellulosic biomasses. J. Anal. Appl. Pyrolysis 2015, 112, 121-128. https://doi.org/10.1016/j.jaap.2015.02.009
641Pahimanolis, N.; Kilpeläinen, P.; Master, E.; Ilvesniemi, H.; Seppälä, J., Novel thiol- amine- and amino acid functional xylan derivatives synthesized by thiol-ene reaction. Carbohydr. Polym. 2015, 131, 392-398. https://doi.org/10.1016/j.carbpol.2015.06.007
642Parikka, K.; Master, E.; Tenkanen, M., Oxidation with galactose oxidase: Multifunctional enzymatic catalysis. J. Mol. Catal. B: Enzym. 2015, 120, 47-59. https://doi.org/10.1016/j.molcatb.2015.06.006
643Placido, A.; Hai, T.; Ferrer, M.; Chernikova, T. N.; Distaso, M.; Armstrong, D.; Yakunin, A. F.; Toshchakov, S. V.; Yakimov, M. M.; Kublanov, I. V.; Golyshina, O. V.; Pesole, G.; Ceci, L. R.; Golyshin, P. N., Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase. Applied Microbiology and Biotechnology 2015, 99 (23), 10031-10046. https://doi.org/10.1007/s00253-015-6873-x
644Popovic, A.; Tchigvintsev, A.; Tran, H.; Chernikova, T. N.; Golyshina, O. V.; Yakimov, M. M.; Golyshin, P. N.; Yakunin, A. F., Metagenomics as a Tool for Enzyme Discovery: Hydrolytic Enzymes from Marine-Related Metagenomes. Adv Exp Med Biol 2015, 883, 1-20. https://doi.org/10.1007/978-3-319-23603-2_1
645Quaile, A. T.; Urbanus, M. L.; Stogios, P. J.; Nocek, B.; Skarina, T.; Ensminger, A. W.; Savchenko, A., Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila. Structure 2015, 23 (8), 1459-1469. https://doi.org/10.1016/j.str.2015.05.020
646Samadifard, N.; Devine, C. E.; Edwards, E.; Mahadevan, K.; Papangelakis, V. G., Ferric sulfate leaching of pyrrhotite tailings between 30 to 55 °C. Minerals 2015, 5 (4), 801-814. https://doi.org/10.3390/min5040526
647Schnurr, P. J.; Allen, D. G., Factors affecting algae biofilm growth and lipid production: A review. Renewable and Sustainable Energy Reviews 2015, 52, 418-429. https://doi.org/10.1016/j.rser.2015.07.090
648Selig, M. J.; Thygesen, L. G.; Felby, C.; Master, E. R., Debranching of soluble wheat arabinoxylan dramatically enhances recalcitrant binding to cellulose. Biotechnology Letters 2015, 37 (3), 633-641. https://doi.org/10.1007/s10529-014-1705-0
649Selig, M. J.; Vuong, T. V.; Gudmundsson, M.; Forsberg, Z.; Westereng, B.; Felby, C.; Master, E. R., Modified cellobiohydrolase–cellulose interactions following treatment with lytic polysaccharide monooxygenase CelS2 (ScLPMO10C) observed by QCM-D. Cellulose 2015, 22 (4), 2263-2270. https://doi.org/10.1007/s10570-015-0635-x
650Semenova, E.; Kuznedelov, K.; Datsenko, K. A.; Boudry, P. M.; Savitskaya, E. E.; Medvedeva, S.; Beloglazova, N.; Logacheva, M.; Yakunin, A. F.; Severinov, K., The Cas6e ribonuclease is not required for interference and adaptation by the E. Coli type I-E CRISPR-Cas system. Nucleic Acids Res. 2015, 43 (12), 6049-6061. https://doi.org/10.1093/nar/gkv546
651Serbanescu, M. A.; Cordova, M.; Krastel, K.; Flick, R.; Beloglazova, N.; Latos, A.; Yakunin, A. F.; Senadheera, D. B.; Cvitkovitch, D. G., Role of the Streptococcus mutans CRISPR-Cas systems in immunity and cell physiology. J. Bacteriol. 2015, 197 (4), 749-761. https://doi.org/10.1128/JB.02333-14
652Sinichi, S.; Diosady, L. L., Isopropyl alcohol extraction of mustard oil. International News on Fats, Oils and Related Materials 2015, 26 (3), 179-182. https://doi.org/10.21748/inform.03.2015.178
653Soleas, J. P.; Waddell, T. K.; McGuigan, A. P., Topographically grooved gel inserts for aligning epithelial cells during air-liquid-interface culture. Biomaterials Science 2015, 3 (1), 121-133. https://doi.org/10.1039/c4bm00237g
654Sontag, R. L.; Mihai, C.; Orr, G.; Savchenko, A.; Skarina, T.; Cui, H.; Cort, J. R.; Adkins, J. N.; Brown, R. N., Electroporation of functional bacterial effectors into mammalian cells. Journal of Visualized Experiments 2015, (95). https://doi.org/10.3791/52296
655Srinivasan, S.; Cluett, W. R.; Mahadevan, R., Constructing kinetic models of metabolism at genome-scales: A review. Biotechnol. J. 2015, 10 (9), 1345-1359. https://doi.org/10.1002/biot.201400522
656Stogios, P. J.; Evdokimova, E.; Morar, M.; Koteva, K.; Wright, G. D.; Courvalin, P.; Savchenko, A., Structural and functional plasticity of antibiotic resistance nucleotidylyltransferases revealed by molecular characterization of lincosamide nucleotidylyltransferases Lnu(A) and Lnu(D). J. Mol. Biol. 2015, 427 (12), 2229-2243. https://doi.org/10.1016/j.jmb.2015.04.008
657Tabtabaei, S.; Boocock, D. G. B.; Diosady, L. L., Biodiesel Production from Mustard Emulsion by a Combined Destabilization/Adsorption Process. J. Am. Oil Chem. Soc. 2015, 92 (8), 1205-1217. https://doi.org/10.1007/s11746-015-2677-5
658Tchigvintsev, A.; Tran, H.; Popovic, A.; Kovacic, F.; Brown, G.; Flick, R.; Hajighasemi, M.; Egorova, O.; Somody, J. C.; Tchigvintsev, D.; Khusnutdinova, A.; Chernikova, T. N.; Golyshina, O. V.; Yakimov, M. M.; Savchenko, A.; Golyshin, P. N.; Jaeger, K. E.; Yakunin, A. F., The environment shapes microbial enzymes: Five cold-active and salt-resistant carboxylesterases from marine metagenomes. Applied Microbiology and Biotechnology 2015, 99 (5), 2165-2178. https://doi.org/10.1007/s00253-014-6038-3
659Toh, S.; Holbrook-Smith, D.; Stogios, P. J.; Onopriyenko, O.; Lumba, S.; Tsuchiya, Y.; Savchenko, A.; McCourt, P., Structure-function analysis identifies highly sensitive strigolactone receptors in Striga. Science 2015, 350 (6257), 203-207. https://doi.org/10.1126/science.aac9476
660Tsai, A. Y. L.; Goacher, R. E.; Master, E. R., Detecting changes in Arabidopsis cell wall composition using time-of-flight secondary ion mass spectrometry. Surf. Interface Anal. 2015, 47 (5), 626-631. https://doi.org/10.1002/sia.5756
661Venayak, N.; Anesiadis, N.; Cluett, W. R.; Mahadevan, R., Engineering metabolism through dynamic control. Curr. Opin. Biotechnol. 2015, 34, 142-152. https://doi.org/10.1016/j.copbio.2014.12.022
662Wallenius, J.; Pahimanolis, N.; Zoppe, J.; Kilpeläinen, P.; Master, E.; Ilvesniemi, H.; Seppälä, J.; Eerikäinen, T.; Ojamo, H., Continuous propionic acid production with Propionibacterium acidipropionici immobilized in a novel xylan hydrogel matrix. Bioresour. Technol. 2015, 197, 1-6. https://doi.org/10.1016/j.biortech.2015.08.037
663Yang, L.; Srinivasan, S.; Mahadevan, R.; Cluett, W. R., Characterizing metabolic pathway diversification in the context of perturbation size. Metab. Eng. 2015, 28, 114-122. https://doi.org/10.1016/j.ymben.2014.11.013
664Bonilla T, S.; Allen, D. G., Flocculation with lysozyme: A Non-Enzymatic Application. Can. J. Chem. Eng. 2016, 94 (2), 231-237. https://doi.org/10.1002/cjce.22386
665Chen, S.; White, C. E.; diCenzo, G. C.; Zhang, Y.; Stogios, P. J.; Savchenko, A.; Finan, T. M., L-Hydroxyproline and D-proline catabolism in Sinorhizobium meliloti. J. Bacteriol. 2016, 198 (7), 1171-1181. https://doi.org/10.1128/JB.00961-15
666Chu, P. L.; Vanderghem, C.; MacLean, H. L.; Saville, B. A., Financial analysis and risk assessment of hydroprocessed renewable jet fuel production from camelina, carinata and used cooking oil. Applied Energy 2016, 198, 401-409. https://doi.org/10.1016/j.apenergy.2016.12.001
667Euler, C. K.; Mahadevan, R., Protein-level control of metabolism: Design principles and prospects from a representative system. IFAC-PapersOnLine 2016, 49 (26), 165-170. https://doi.org/10.1016/j.ifacol.2016.12.120
668Fitamo, T. M.; Dahl, O.; Master, E.; Meyer, T., Biochemical methane potential of kraft bleaching effluent and codigestion with other in-mill streams. Tappi J. 2016, 15 (2), 80-88. https://doi.org/10.32964/tj15.2.80
669Gagarinova, A.; Stewart, G.; Samanfar, B.; Phanse, S.; White, C. A.; Aoki, H.; Deineko, V.; Beloglazova, N.; Yakunin, A. F.; Golshani, A.; Brown, E. D.; Babu, M.; Emili, A., Systematic genetic screens reveal the dynamic global functional organization of the bacterial translation machinery. Cell Rep. 2016, 17 (3), 904-916. https://doi.org/10.1016/j.celrep.2016.09.040
670Gerbrandt, K.; Chu, P. L.; Simmonds, A.; Mullins, K. A.; MacLean, H. L.; Griffin, W. M.; Saville, B. A., Life cycle assessment of lignocellulosic ethanol: A review of key factors and methods affecting calculated GHG emissions and energy use. Curr. Opin. Biotechnol. 2016, 38, 63-70. https://doi.org/10.1016/j.copbio.2015.12.021
671Griffin, W. M.; Saville, B. A.; MacLean, H. L., Chapter 2 - Ethanol Use in the United States: Status, Threats and the Potential Future. In Global Bioethanol, Salles-Filho, S. L. M.; Cortez, L. A. B.; da Silveira, J. M. F. J.; Trindade, S. C.; Fonseca, M. d. G. D., Eds. Academic Press: 2016; pp 34-62. https://doi.org/https://doi.org/10.1016/B978-0-12-803141-4.00002-2
672Hajighasemi, M.; Nocek, B. P.; Tchigvintsev, A.; Brown, G.; Flick, R.; Xu, X.; Cui, H.; Hai, T.; Joachimiak, A.; Golyshin, P. N.; Savchenko, A.; Edwards, E. A.; Yakunin, A. F., Biochemical and structural insights into enzymatic depolymerization of polylactic acid and other polyesters by microbial carboxylesterases. Biomacromolecules 2016, 17 (6), 2027-2039. https://doi.org/10.1021/acs.biomac.6b00223
673Huang, L.; Khusnutdinova, A.; Nocek, B.; Brown, G.; Xu, X.; Cui, H.; Petit, P.; Flick, R.; Zallot, R.; Balmant, K.; Ziemak, M. J.; Shanklin, J.; De Crécy-Lagard, V.; Fiehn, O.; Gregory, J. F.; Joachimiak, A.; Savchenko, A.; Yakunin, A. F.; Hanson, A. D., A family of metal-dependent phosphatases implicated in metabolite damage-control. Nat. Chem. Biol. 2016, 12 (8), 621-627. https://doi.org/10.1038/nchembio.2108
674Islam, M. A.; Tchigvintsev, A.; Yim, V.; Savchenko, A.; Yakunin, A. F.; Mahadevan, R.; Edwards, E. A., Experimental validation of in silico model-predicted isocitrate dehydrogenase and phosphomannose isomerase from Dehalococcoides mccartyi. Microb. Biotechnol. 2016, 9 (1), 47-60. https://doi.org/10.1111/1751-7915.12315
675Khaksar Toroghi, M.; Cluett, W. R.; Mahadevan, K., Multi-scale metabolic modelling approach for predicting blood alcohol concentration. IEEE Life Sciences Letters 2016, 2 (4), 59-62.

676Kocur, C. M. D.; Lomheim, L.; Molenda, O.; Weber, K. P.; Austrins, L. M.; Sleep, B. E.; Boparai, H. K.; Edwards, E. A.; O'Carroll, D. M., Long-term field study of microbial community and dechlorinating activity following carboxymethyl cellulose-stabilized nanoscale zero-valent iron injection. Environ. Sci. Technol. 2016, 50 (14), 7658-7670. https://doi.org/10.1021/acs.est.6b01745
677Kumar, A.; Beloglazova, N.; Bundalovic-Torma, C.; Phanse, S.; Deineko, V.; Gagarinova, A.; Musso, G.; Vlasblom, J.; Lemak, S.; Hooshyar, M.; Minic, Z.; Wagih, O.; Mosca, R.; Aloy, P.; Golshani, A.; Parkinson, J.; Emili, A.; Yakunin, A. F.; Babu, M., Conditional epistatic interaction maps reveal global functional rewiring of genome integrity pathways in Escherichia coli. Cell Rep. 2016, 14 (3), 648-661. https://doi.org/10.1016/j.celrep.2015.12.060
678Luk, J. M.; Saville, B. A.; MacLean, H. L., Impact of non-petroleum vehicle fuel economy on GHG mitigation potential. Environmental Research Letters 2016, 11 (4). https://doi.org/10.1088/1748-9326/11/4/044001
679Luk, J. M.; Saville, B. A.; MacLean, H. L., Vehicle attribute trade-offs to meet the 2025 CAFE fuel economy target. Transportation Research Part D: Transport and Environment 2016, 49, 154-171. https://doi.org/10.1016/j.trd.2016.09.005
680MacDonald, J.; Goacher, R. E.; Abou-Zaid, M.; Master, E. R., Comparative analysis of lignin peroxidase and manganese peroxidase activity on coniferous and deciduous wood using ToF-SIMS. Applied Microbiology and Biotechnology 2016, 100 (18), 8013-8020. https://doi.org/10.1007/s00253-016-7560-2
681Mayer-Blackwell, K.; Fincker, M.; Molenda, O.; Callahan, B.; Sewell, H.; Holmes, S.; Edwards, E. A.; Spormann, A. M., 1,2-Dichloroethane exposure alters the population structure, metabolism, and kinetics of a trichloroethene-dechlorinating Dehalococcoides mccartyi consortium. Environ. Sci. Technol. 2016, 50 (22), 12187-12196. https://doi.org/10.1021/acs.est.6b02957
682McGregor, N.; Morar, M.; Fenger, T. H.; Stogios, P.; Lenfant, N.; Yin, V.; Xu, X.; Evdokimova, E.; Cui, H.; Henrissat, B.; Savchenko, A.; Brumer, H., Structure-function analysis of a mixed-linkage β-glucanase/xyloglucanase from the key ruminal bacteroidetes Prevotella bryantii B14. J. Biol. Chem. 2016, 291 (3), 1175-1197. https://doi.org/10.1074/jbc.M115.691659
683McGuigan, A. P.; Javaherian, S., Tissue Patterning: Translating Design Principles from In Vivo to In Vitro. Annu. Rev. Biomed. Eng. 2016, 18, 1-24. https://doi.org/10.1146/annurev-bioeng-083115-032943
684McKechnie, J.; Saville, B.; MacLean, H. L., Steam-treated wood pellets: Environmental and financial implications relative to fossil fuels and conventional pellets for electricity generation. Applied Energy 2016, 180, 637-649. https://doi.org/10.1016/j.apenergy.2016.08.024
685Meyer, T.; Yang, M. I.; Tran, H. N.; Allen, D. G.; Edwards, E. A., Impact of resin and fatty acids on full-scale anaerobic treatment of pulp and paper mill effluents. Environ. Eng. Sci. 2016, 33 (6), 394-403. https://doi.org/10.1089/ees.2015.0395
686Mimura, M.; Zallot, R.; Niehaus, T. D.; Hasnain, G.; Gidda, S. K.; Nguyen, T. N. D.; Anderson, E. M.; Mullen, R. T.; Brown, G.; Yakunin, A. F.; de Crécy-Lagard, V.; Gregory, J. F., III; McCarty, D. R.; Hanson, A. D., Arabidopsis TH2 encodes the orphan enzyme thiamin monophosphate phosphatase. Plant Cell 2016, 28 (10), 2683-2696. https://doi.org/10.1105/tpc.16.00600
687Molenda, O.; Quaile, A. T.; Edwards, E. A., Dehalogenimonas sp. Strain WBC-2 genome and identification of its trans-dichloroethene reductive dehalogenase, TdrA. Applied and Environmental Microbiology 2016, 82 (1), 40-50. https://doi.org/10.1128/AEM.02017-15
688Molenda, O.; Tang, S.; Edwards Elizabeth, A., Complete Genome Sequence of Dehalococcoides mccartyi Strain WBC-2, Capable of Anaerobic Reductive Dechlorination of Vinyl Chloride. Genome Announcements 2016, 4 (6), e01375-16. https://doi.org/10.1128/genomeA.01375-16
689Mollerup, F.; Master, E., Influence of a family 29 carbohydrate binding module on the recombinant production of galactose oxidase in Pichia pastoris. Data in Brief 2016, 6, 176-183. https://doi.org/10.1016/j.dib.2015.11.032
690Mollerup, F.; Parikka, K.; Vuong, T. V.; Tenkanen, M.; Master, E., Influence of a family 29 carbohydrate binding module on the activity of galactose oxidase from Fusarium graminearum. Biochimica et Biophysica Acta - General Subjects 2016, 1860 (2), 354-362. https://doi.org/10.1016/j.bbagen.2015.10.023
691Namazi, A. B.; Allen, D. G.; Jia, C. Q., Benefits of microwave heating method in production of activated carbon. Can. J. Chem. Eng. 2016, 94 (7), 1262-1268. https://doi.org/10.1002/cjce.22521
692Otani, H.; Stogios, P. J.; Xu, X.; Nocek, B.; Li, S. N.; Savchenko, A.; Eltis, L. D., The activity of CouR, a MarR family transcriptional regulator, is modulated through a novel molecular mechanism. Nucleic Acids Res. 2016, 44 (2), 595-607. https://doi.org/10.1093/nar/gkv955
693Peniuk, G. T.; Schnurr, P. J.; Allen, D. G., Identification and quantification of suspended algae and bacteria populations using flow cytometry: applications for algae biofuel and biochemical growth systems. J. Appl. Phycol. 2016, 28 (1), 95-104. https://doi.org/10.1007/s10811-015-0569-6
694Rodenhizer, D.; Cojocari, D.; Wouters, B. G.; McGuigan, A. P., Development of TRACER: Tissue roll for analysis of cellular environment and response. Biofabrication 2016, 8 (4). https://doi.org/10.1088/1758-5090/8/4/045008
695Rodenhizer, D.; Gaude, E.; Cojocari, D.; Mahadevan, R.; Frezza, C.; Wouters, B. G.; McGuigan, A. P., A three-dimensional engineered tumour for spatial snapshot analysis of cell metabolism and phenotype in hypoxic gradients. Nature Materials 2016, 15 (2), 227-234. https://doi.org/10.1038/nmat4482
696Rolando, M.; Escoll, P.; Nora, T.; Botti, J.; Boitez, V.; Bedia, C.; Daniels, C.; Abraham, G.; Stogios, P. J.; Skarina, T.; Christophe, C.; Dervins-Ravault, D.; Cazalet, C.; Hilbi, H.; Rupasinghe, T. W. T.; Tull, D.; McConville, M. J.; Ong, S. Y.; Hartland, E. L.; Codogno, P.; Levade, T.; Naderer, T.; Savchenko, A.; Buchrieser, C., Legionella pneumophila S1P-lyase targets host sphingolipid metabolism and restrains autophagy. Proceedings of the National Academy of Sciences of the United States of America 2016, 113 (7), 1901-1906. https://doi.org/10.1073/pnas.1522067113
697Saville, B. A.; Griffin, W. M.; MacLean, H. L., Ethanol Production Technologies in the US: Status and Future Developments. In Global Bioethanol: Evolution, Risks, and Uncertainties, Elsevier Inc.: 2016; pp 163-180. https://doi.org/10.1016/B978-0-12-803141-4.00007-1
698Schnurr, P. J.; Espie, G. S.; Allen, G. D., The effect of photon flux density on algal biofilm growth and internal fatty acid concentrations. Algal Research 2016, 16, 349-356. https://doi.org/10.1016/j.algal.2016.04.001
699Schnurr, P. J.; Molenda, O.; Edwards, E.; Espie, G. S.; Allen, D. G., Improved biomass productivity in algal biofilms through synergistic interactions between photon flux density and carbon dioxide concentration. Bioresour. Technol. 2016, 219, 72-79. https://doi.org/10.1016/j.biortech.2016.06.129
700Shen, A. H.; Howell, D.; Edwards, E.; Warde, P.; Matthew, A.; Jones, J. M., The experience of patients with early-stage testicular cancer during the transition from active treatment to follow-up surveillance. Urologic Oncology: Seminars and Original Investigations 2016, 34 (4). https://doi.org/10.1016/j.urolonc.2015.09.016
701Stogios, P. J.; Cox, G.; Spanogiannopoulos, P.; Pillon, M. C.; Waglechner, N.; Skarina, T.; Koteva, K.; Guarné, A.; Savchenko, A.; Wright, G. D., Rifampin phosphotransferase is an unusual antibiotic resistance kinase. Nature Communications 2016, 7, 1-12. https://doi.org/10.1038/ncomms11343
702Tabtabaei, S.; Hijar, B.; Chen, B. K.; Diosady, L. L., Functional properties of protein isolates produced by aqueous extraction of de-hulled yellow mustard. J. Am. Oil Chem. Soc. 2016, 94 (1), 149-160. https://doi.org/10.1007/s11746-016-2922-6
703Tang, S.; Wang, P. H.; Higgins, S. A.; Löffler, F. E.; Edwards, E. A., Sister Dehalobacter Genomes Reveal Specialization in Organohalide Respiration and Recent Strain Differentiation Likely Driven by Chlorinated Substrates. Front. Microbiol. 2016, 7, 100. https://doi.org/10.3389/fmicb.2016.00100
704Toroghi, M. K.; Cluett, W. R.; Mahadevan, R., Multiscale metabolic modeling approach for predicting blood alcohol concentration. IEEE Life Sciences Letters 2016, 2 (4), 59-62. https://doi.org/10.1109/LLS.2016.2644647
705Toroghi, M. K.; Cluett, W. R.; Mahadevan, R., A multi-scale model of the whole human body based on dynamic parsimonious flux balance analysis. IFAC-PapersOnLine 2016, 49 (7), 937-942. https://doi.org/10.1016/j.ifacol.2016.07.319
706Urbanus, M. L.; Quaile, A. T.; Stogios, P. J.; Morar, M.; Rao, C.; Di Leo, R.; Evdokimova, E.; Lam, M.; Oatway, C.; Cuff, M. E.; Osipiuk, J.; Michalska, K.; Nocek, B. P.; Taipale, M.; Savchenko, A.; Ensminger, A. W., Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila. Mol. Syst. Biol. 2016, 12 (12). https://doi.org/10.15252/msb.20167381
707Vuong, T. V.; Foumani, M.; MacCormick, B.; Kwan, R.; Master, E. R., Direct comparison of gluco-oligosaccharide oxidase variants and glucose oxidase: substrate range and H(2)O(2) stability. Sci. Rep. 2016, 6, 37356. https://doi.org/10.1038/srep37356
708Wang, P. H.; Tang, S.; Nemr, K.; Flick, R.; Yan, J.; Mahadevan, R.; F Yakunin, A.; Löffler, F. E.; Edwards, E. A., Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring Dehalobacter isolates. ISME Journal 2016, 11 (3), 626-640. https://doi.org/10.1038/ismej.2016.158
709Wang, W.; Yan, R.; Nocek, B. P.; Vuong, T. V.; Leo, R. D.; Xu, X.; Cui, H.; Gatenholm, P.; Toriz, G.; Tenkanen, M.; Savchenko, A.; Master, E. R., Biochemical and structural characterization of a five-domain GH115 α-Glucuronidase from the marine bacterium Saccharophagus degradans 2-40T. J. Biol. Chem. 2016, 291 (27), 14120-14133. https://doi.org/10.1074/jbc.M115.702944
710Wei, K.; Grostern, A.; Chan, W. W. M.; Richardson, R. E.; Edwards, E. A., Electron acceptor interactions between organohalide-respiring bacteria: Cross-feeding, competition, and inhibition. In Organohalide-Respiring Bacteria, Springer Berlin Heidelberg: 2016; pp 283-308. https://doi.org/10.1007/978-3-662-49875-0_13
711Wong, M. T.; Wang, W.; Lacourt, M.; Couturier, M.; Edwards, E. A.; Master, E. R., Substrate-Driven Convergence of the Microbial Community in Lignocellulose-Amended Enrichments of Gut Microflora from the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus). Front. Microbiol. 2016, 7, 961. https://doi.org/10.3389/fmicb.2016.00961
712Xiao, Y.; Reis, L. A.; Feric, N.; Knee, E. J.; Gu, J.; Cao, S.; Laschinger, C.; Londono, C.; Antolovich, J.; McGuigan, A. P.; Radisic, M., Diabetic wound regeneration using peptide-modified hydrogels to target re-epithelialization. Proceedings of the National Academy of Sciences of the United States of America 2016, 113 (40), E5792-E5801. https://doi.org/10.1073/pnas.1612277113
713Xu, B.; Rodenhizer, D.; Lakhani, S.; Zhang, X.; Soleas, J. P.; Ailles, L.; McGuigan, A. P., Patterning cellular compartments within TRACER cultures using sacrificial gelatin printing. Biofabrication 2016, 8 (3). https://doi.org/10.1088/1758-5090/8/3/035018
714Andberg, M.; Mollerup, F.; Parikka, K.; Koutaniemi, S.; Boer, H.; Juvonen, M.; Master, E.; Tenkanen, M.; Kruus, K., A Novel Colletotrichum graminicola Raffinose Oxidase in the AA5 Family. Applied and Environmental Microbiology 2017, 83 (20), e01383-17. https://doi.org/10.1128/AEM.01383-17
715Azimi, Y.; Liu, Y.; Tan, T. C.; Allen, D. G.; Farnood, R. R., The tail of two models: Impact of circularity and biomass non-homogeneity on UV disinfection of wastewater flocs. Water Res. 2017, 126, 70-78. https://doi.org/10.1016/j.watres.2017.09.011
716Chu, P. L.; Vanderghem, C.; MacLean, H. L.; Saville, B. A., Process modeling of hydrodeoxygenation to produce renewable jet fuel and other hydrocarbon fuels. Fuel 2017, 196, 298-305. https://doi.org/10.1016/j.fuel.2017.01.097
717Currie, M. A.; Brown, G.; Wong, A.; Ohira, T.; Sugiyama, K.; Suzuki, T.; Yakunin, A. F.; Jia, Z., Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases. RNA 2017, 23 (3), 346-354. https://doi.org/10.1261/rna.057943
718Dueik, V.; Chen, B. K.; Diosady, L. L., Iron-Polyphenol Interaction Reduces Iron Bioavailability in Fortified Tea: Competing Complexation to Ensure Iron Bioavailability. J. Food Qual. 2017, 2017, 1805047. https://doi.org/10.1155/2017/1805047
719Dueik, V.; Diosady, L. L., Microencapsulation of iron in a reversed enteric coating using spray drying technology for double fortification of salt with iodine and iron. J. Food Process Eng. 2017, 40 (2), e12376. https://doi.org/https://doi.org/10.1111/jfpe.12376
720Gandier, J. A.; Langelaan, D. N.; Won, A.; O'Donnell, K.; Grondin, J. L.; Spencer, H. L.; Wong, P.; Tillier, E.; Yip, C.; Smith, S. P.; Master, E. R., Characterization of a Basidiomycota hydrophobin reveals the structural basis for a high-similarity Class I subdivision. Sci. Rep. 2017, 7, 45863. https://doi.org/10.1038/srep45863
721Garg, S.; Judd, K.; Mahadevan, R.; Edwards, E.; Papangelakis, V. G., Leaching characteristics of nickeliferous pyrrhotite tailings from the Sudbury, Ontario area. Can. Metall. Q. 2017, 56 (4), 372-381. https://doi.org/10.1080/00084433.2017.1361162
722Garg, S.; Papangelakis, V.; Edwards, E.; Mahadevan, R., Application of a selective dissolution protocol to quantify the terminal dissolution extents of pyrrhotite and pentlandite from pyrrhotite tailings. Int. J. Miner. Process. 2017, 158, 27-34. https://doi.org/10.1016/j.minpro.2016.11.004
723Gaskell, J.; Kersten, P.; Larrondo, L. F.; Canessa, P.; Martinez, D.; Hibbett, D.; Schmoll, M.; Kubicek, C. P.; Martinez, A. T.; Yadav, J.; Master, E.; Magnuson, J. K.; Yaver, D.; Berka, R.; Lail, K.; Chen, C.; LaButti, K.; Nolan, M.; Lipzen, A.; Aerts, A.; Riley, R.; Barry, K.; Henrissat, B.; Blanchette, R.; Grigoriev, I. V.; Cullen, D., Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12. Genomics Data 2017, 14, 21-23. https://doi.org/10.1016/j.gdata.2017.08.003
724Golyshina, O. V.; Tran, H.; Reva, O. N.; Lemak, S.; Yakunin, A. F.; Goesmann, A.; Nechitaylo, T. Y.; Lacono, V.; Smedile, F.; Slesarev, A.; Rojo, D.; Barbas, C.; Ferrer, M.; Yakimov, M. M.; Golyshin, P. N., Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT. Sci. Rep. 2017, 7 (1). https://doi.org/10.1038/s41598-017-03904-5
725Guzman, I.; Thorpe, S. J.; Papangelakis, V. G., Redox potential measurement during pressure oxidation (POX) of a refractory gold ore. Can. Metall. Q. 2017, 1-8. https://doi.org/10.1080/00084433.2017.1386363
726Javaherian, S.; D'Arcangelo, E.; Slater, B.; Londono, C.; Xu, B.; McGuigan, A. P., Modulation of cellular polarization and migration by ephrin/Eph signal-mediated boundary formation. Integrative Biology (United Kingdom) 2017, 9 (12), 934-946. https://doi.org/10.1039/c7ib00176b
727Joo, J. C.; Khusnutdinova, A. N.; Flick, R.; Kim, T.; Bornscheuer, U. T.; Yakunin, A. F.; Mahadevan, R., Alkene hydrogenation activity of enoate reductases for an environmentally benign biosynthesis of adipic acid. Chemical Science 2017, 8 (2), 1406-1413. https://doi.org/10.1039/c6sc02842j
728Kalami, S.; Arefmanesh, M.; Master, E.; Nejad, M., Replacing 100% of phenol in phenolic adhesive formulations with lignin. J. Appl. Polym. Sci. 2017, 134 (30), 45124. https://doi.org/https://doi.org/10.1002/app.45124
729Khojasteh Salkuyeh, Y.; Saville, B. A.; MacLean, H. L., Techno-economic analysis and life cycle assessment of hydrogen production from natural gas using current and emerging technologies. Int. J. Hydrogen Energy 2017. https://doi.org/10.1016/j.ijhydene.2017.05.219
730Khusnutdinova, A. N.; Flick, R.; Popovic, A.; Brown, G.; Tchigvintsev, A.; Nocek, B.; Correia, K.; Joo, J. C.; Mahadevan, R.; Yakunin, A. F., Exploring Bacterial Carboxylate Reductases for the Reduction of Bifunctional Carboxylic Acids. Biotechnol. J. 2017, 12 (11), 1600751. https://doi.org/https://doi.org/10.1002/biot.201600751
731Klamt, S.; Regensburger, G.; Gerstl, M. P.; Jungreuthmayer, C.; Schuster, S.; Mahadevan, R.; Zanghellini, J.; Müller, S., From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Comput. Biol. 2017, 13 (4), e1005409. https://doi.org/10.1371/journal.pcbi.1005409
732Kolliopoulos, G.; Holland, A. M.; Papangelakis, V. G., Modeling of density and electrical conductivity of aqueous carbonated trimethylamine (TMA–CO2–H2O) solutions at 20 °C. Monatsh. Chem. 2017, 1-8. https://doi.org/10.1007/s00706-017-2091-9
733Littunen, K.; Mai-Gisondi, G.; Seppälä, J.; Master, E. R., Enzymatically debranched xylans in graft copolymerization. Biomacromolecules 2017, 18 (5), 1634-1641. https://doi.org/10.1021/acs.biomac.7b00229
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762Gandier, J. A.; Master, E. R., Pichia pastoris is a Suitable Host for the Heterologous Expression of Predicted Class I and Class II Hydrophobins for Discovery, Study, and Application in Biotechnology. Microorganisms 2018, 6 (1), 3. https://doi.org/10.3390/microorganisms6010003
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767MacCormick, B.; Vuong, T. V.; Master, E. R., Chemo-enzymatic Synthesis of Clickable Xylo-oligosaccharide Monomers from Hardwood 4-O-Methylglucuronoxylan. Biomacromolecules 2018, 19 (2), 521-530. https://doi.org/10.1021/acs.biomac.7b01642
768Maurício da Fonseca, M. J.; Jurak, E.; Kataja, K.; Master, E. R.; Berrin, J. G.; Stals, I.; Desmet, T.; Van Landschoot, A.; Briers, Y., Analysis of the substrate specificity of α-L-arabinofuranosidases by DNA sequencer-aided fluorophore-assisted carbohydrate electrophoresis. Appl Microbiol Biotechnol 2018, 102 (23), 10091-10102. https://doi.org/10.1007/s00253-018-9389-3
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813Heavner, G. L. W.; Mansfeldt, C. B.; Wilkins, M. J.; Nicora, C. D.; Debs, G. E.; Edwards, E. A.; Richardson, R. E., Detection of Organohalide-Respiring Enzyme Biomarkers at a Bioaugmented TCE-Contaminated Field Site. Front. Microbiol. 2019, 10, 1433. https://doi.org/10.3389/fmicb.2019.01433
814Heckel, B.; Phillips, E.; Edwards, E.; Sherwood Lollar, B.; Elsner, M.; Manefield, M. J.; Lee, M., Reductive Dehalogenation of Trichloromethane by Two Different Dehalobacter restrictus Strains Reveal Opposing Dual Element Isotope Effects. Environ. Sci. Technol. 2019, 53 (5), 2332-2343. https://doi.org/10.1021/acs.est.8b03717
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818Lihl, C.; Douglas, L. M.; Franke, S.; Pérez-de-Mora, A.; Meyer, A. H.; Daubmeier, M.; Edwards, E. A.; Nijenhuis, I.; Sherwood Lollar, B.; Elsner, M., Mechanistic Dichotomy in Bacterial Trichloroethene Dechlorination Revealed by Carbon and Chlorine Isotope Effects. Environ Sci Technol 2019, 53 (8), 4245-4254. https://doi.org/10.1021/acs.est.8b06643
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821Mollerup, F.; Aumala, V.; Parikka, K.; Mathieu, Y.; Brumer, H.; Tenkanen, M.; Master, E., A family AA5_2 carbohydrate oxidase from Penicillium rubens displays functional overlap across the AA5 family. PLoS One 2019, 14 (5), e0216546. https://doi.org/10.1371/journal.pone.0216546
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825Puentes Jácome, L. A.; Wang, P. H.; Molenda, O.; Li, Y. X. J.; Islam, M. A.; Edwards, E. A., Sustained Dechlorination of Vinyl Chloride to Ethene in Dehalococcoides-Enriched Cultures Grown without Addition of Exogenous Vitamins and at Low pH. Environ Sci Technol 2019, 53 (19), 11364-11374. https://doi.org/10.1021/acs.est.9b02339
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828Sarch, C.; Suzuki, H.; Master, E. R.; Wang, W., Kinetics and regioselectivity of three GH62 α-L-arabinofuranosidases from plant pathogenic fungi. Biochimica et Biophysica Acta - General Subjects 2019, 1863 (6), 1070-1078. https://doi.org/10.1016/j.bbagen.2019.03.020
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832Toroghi, M. K.; Cluett, W. R.; Mahadevan, R., A multi-scale model for low-density lipoprotein cholesterol (LDL-C) regulation in the human body: Application to quantitative systems pharmacology. Comput. Chem. Eng. 2019, 130, 106507. https://doi.org/https://doi.org/10.1016/j.compchemeng.2019.06.032
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836Arefmanesh, M.; Vuong, T. V.; Mobley, J. K.; Alinejad, M.; Master, E. R.; Nejad, M., Bromide-Based Ionic Liquid Treatment of Hardwood Organosolv Lignin Yielded a More Reactive Biobased Polyol. Ind. Eng. Chem. Res. 2020, 59 (42), 18740-18747. https://doi.org/10.1021/acs.iecr.0c03718
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840Chen, J.; Liu, Y.; Diep, P.; Jo, A.; Nesbø, C.; Edwards, E.; Papangelakis, V.; Mahadevan, R., Complete Genome Sequence of Acidithiobacillus ferridurans JAGS, Isolated from Acidic Mine Drainage. Microbiology Resource Announcements 2020, 9 (13), e00033-20. https://doi.org/doi:10.1128/MRA.00033-20
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847Dean, T.; Li, N. T.; Cadavid, J. L.; Ailles, L.; McGuigan, A. P., A TRACER culture invasion assay to probe the impact of cancer associated fibroblasts on head and neck squamous cell carcinoma cell invasiveness. Biomaterials science 2020, 8 (11), 3078-3094. https://doi.org/10.1039/c9bm02017a
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852Kanger, K.; Guilford, N. G. H.; Lee, H.; Nesbø, C. L.; Truu, J.; Edwards, E. A., Antibiotic resistome and microbial community structure during anaerobic co-digestion of food waste, paper and cardboard. FEMS Microbiol. Ecol. 2020, 96 (2). https://doi.org/10.1093/femsec/fiaa006
853Karppi, J.; Zhao, H.; Chong, S.-L.; Koistinen, A. E.; Tenkanen, M.; Master, E., Quantitative Comparison of Pyranose Dehydrogenase Action on Diverse Xylooligosaccharides. Frontiers in Chemistry 2020, 8. https://doi.org/10.3389/fchem.2020.00011
854Kim, T.; Stogios, P. J.; Khusnutdinova, A. N.; Nemr, K.; Skarina, T.; Flick, R.; Joo, J. C.; Mahadevan, R.; Savchenko, A.; Yakunin, A. F., Rational engineering of 2-deoxyribose-5-phosphate aldolases for the biosynthesis of (R)-1,3-butanediol. J. Biol. Chem. 2020, 295 (2), 597-609. https://doi.org/10.1074/jbc.RA119.011363
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856Lau, C. H.-F.; DeJong, E. N.; Dussault, F.; Carrillo, C.; Stogios, P. J.; Savchenko, A.; Topp, E., A penicillin-binding protein that can promote advanced-generation cephalosporin resistance and genome adaptation in the opportunistic pathogen Pseudomonas aeruginosa. Int. J. Antimicrob. Agents 2020, 55 (3), 105896. https://doi.org/https://doi.org/10.1016/j.ijantimicag.2020.105896
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858Li, Y.; Khuu, N.; Prince, E.; Tao, H.; Zhang, N.; Chen, Z.; Gevorkian, A.; McGuigan, A. P.; Kumacheva, E., Matrix Stiffness-Regulated Growth of Breast Tumor Spheroids and Their Response to Chemotherapy. Biomacromolecules 2020. https://doi.org/10.1021/acs.biomac.0c01287
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860Liu, Y.; Chen, J.; Crisante, D.; Jaramillo Lopez, J. M.; Mahadevan, R., Dynamic Cell Programming with Quorum Sensing-Controlled CRISPRi Circuit. ACS Synthetic Biology 2020, 9 (6), 1284-1291. https://doi.org/10.1021/acssynbio.0c00148
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862Lomheim, L.; Laquitaine, L.; Rambinaising, S.; Flick, R.; Starostine, A.; Jean-Marius, C.; Edwards, E. A.; Gaspard, S., Evidence for extensive anaerobic dechlorination and transformation of the pesticide chlordecone (C10Cl10O) by indigenous microbes in microcosms from Guadeloupe soil. PLoS One 2020, 15 (4), e0231219. https://doi.org/10.1371/journal.pone.0231219
863Makarova, K. S.; Wolf, Y. I.; Iranzo, J.; Shmakov, S. A.; Alkhnbashi, O. S.; Brouns, S. J. J.; Charpentier, E.; Cheng, D.; Haft, D. H.; Horvath, P.; Moineau, S.; Mojica, F. J. M.; Scott, D.; Shah, S. A.; Siksnys, V.; Terns, M. P.; Venclovas, Č.; White, M. F.; Yakunin, A. F.; Yan, W.; Zhang, F.; Garrett, R. A.; Backofen, R.; van der Oost, J.; Barrangou, R.; Koonin, E. V., Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants. Nature Reviews Microbiology 2020, 18 (2), 67-83. https://doi.org/10.1038/s41579-019-0299-x
864Milovanoff, A.; Posen, I. D.; Saville, B. A.; MacLean, H. L., Well-to-wheel greenhouse gas implications of mid-level ethanol blend deployment in Canada's light-duty fleet. Renewable and Sustainable Energy Reviews 2020, 131, 110012. https://doi.org/https://doi.org/10.1016/j.rser.2020.110012
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866Molenda, O.; Puentes Jácome, L. A.; Cao, X.; Nesbø, C. L.; Tang, S.; Morson, N.; Patron, J.; Lomheim, L.; Wishart, D. S.; Edwards, E. A., Insights into origins and function of the unexplored majority of the reductive dehalogenase gene family as a result of genome assembly and ortholog group classification. Environ. Sci. Process. Impacts 2020, 22 (3), 663-678. https://doi.org/10.1039/c9em00605b
867Mottiar, Y.; Gierlinger, N.; Jeremic, D.; Master, E. R.; Mansfield, S. D., Atypical lignification in eastern leatherwood (Dirca palustris). New Phytol. 2020, 226 (3), 704-713. https://doi.org/10.1111/nph.16394
868Obnamia, J. A.; MacLean, H. L.; Saville, B. A., Regional variations in life cycle greenhouse gas emissions of canola-derived jet fuel produced in western Canada. GCB Bioenergy 2020, 12 (10), 818-833. https://doi.org/10.1111/gcbb.12735
869Paquette, A. J.; Sharp, C. E.; Schnurr, P. J.; Allen, D. G.; Short, S. M.; Espie, G. S., Dynamic changes in community composition of Scenedesmus-seeded artificial, engineered microalgal biofilms. Algal Research 2020, 46, 101805. https://doi.org/https://doi.org/10.1016/j.algal.2020.101805
870Popov, G.; Evdokimova, E.; Stogios, P. J.; Savchenko, A., Structure of the full-length Serratia marcescens acetyltransferase AAC(3)-Ia in complex with coenzyme A. Protein Sci. 2020, 29 (3), 803-808. https://doi.org/10.1002/pro.3811
871Qiao, W.; Puentes Jácome, L. A.; Tang, X.; Lomheim, L.; Yang, M. I.; Gaspard, S.; Avanzi, I. R.; Wu, J.; Ye, S.; Edwards, E. A., Microbial Communities Associated with Sustained Anaerobic Reductive Dechlorination of α-, β-, γ-, and δ-Hexachlorocyclohexane Isomers to Monochlorobenzene and Benzene. Environ. Sci. Technol. 2020, 54 (1), 255-265. https://doi.org/10.1021/acs.est.9b05558
872Raj, K.; Venayak, N.; Mahadevan, R., Novel two-stage processes for optimal chemical production in microbes. bioRxiv 2020, 803023. https://doi.org/10.1101/803023
873Semper, C.; Stogios, P.; Meziane-Cherif, D.; Evdokimova, E.; Courvalin, P.; Savchenko, A., Structural characterization of aminoglycoside 4′-O-adenylyltransferase ANT(4′)-IIb from Pseudomonas aeruginosa. Protein Sci. 2020, 29 (3), 758-767. https://doi.org/10.1002/pro.3815
874Soleas, J. P.; D'Arcangelo, E.; Huang, L.; Karoubi, G.; Nostro, M. C.; McGuigan, A. P.; Waddell, T. K., Assembly of lung progenitors into developmentally-inspired geometry drives differentiation via cellular tension. Biomaterials 2020, 254. https://doi.org/10.1016/j.biomaterials.2020.120128
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876Toroghi, M. K.; Cluett, W. R.; Mahadevan, R., A Personalized Multiscale Modeling Framework for Dose Selection in Precision Medicine. Ind. Eng. Chem. Res. 2020, 59 (21), 9819-9829. https://doi.org/10.1021/acs.iecr.0c01070
877Tratnyek, P. G.; Edwards, E.; Carpenter, L.; Blossom, S., Environmental occurrence, fate, effects, and remediation of halogenated (semi)volatile organic compounds. Environ. Sci. Process. Impacts 2020, 22 (3), 465-471. https://doi.org/10.1039/d0em90008g
878Varma, R.; Soleas, J. P.; Waddell, T. K.; Karoubi, G.; McGuigan, A. P., Current strategies and opportunities to manufacture cells for modeling human lungs. Adv. Drug Del. Rev. 2020, 161-162, 90-109. https://doi.org/10.1016/j.addr.2020.08.005
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880Vuong, T. V.; Master, E. R., Enzymatic production of 4-O-methyl d-glucaric acid from hardwood xylan. Biotechnol Biofuels 2020, 13, 51. https://doi.org/10.1186/s13068-020-01691-2
881Wang, P. H.; Fujishima, K.; Berhanu, S.; Kuruma, Y.; Jia, T. Z.; Khusnutdinova, A. N.; Yakunin, A. F.; McGlynn, S. E., A Bifunctional Polyphosphate Kinase Driving the Regeneration of Nucleoside Triphosphate and Reconstituted Cell-Free Protein Synthesis. ACS Synthetic Biology 2020, 9 (1), 36-42. https://doi.org/10.1021/acssynbio.9b00456
882Yang, M. I.; Previdsa, M.; Edwards, E. A.; Sleep, B. E., Using cell yields and qPCR to estimate biotic contribution to 1,1,1-trichloroethane dechlorination at a field site treated with granular zero valent iron and guar gum. bioRxiv 2020, 583229. https://doi.org/10.1101/583229
883Yang, M. I.; Previdsa, M.; Edwards, E. A.; Sleep, B. E., Two distinct Dehalobacter strains sequentially dechlorinate 1,1,1-trichloroethane and 1,1-dichloroethane at a field site treated with granular zero valent iron and guar gum. Water Res. 2020, 186, 116310. https://doi.org/10.1016/j.watres.2020.116310
884Bahlmann, L. C.; Baker, A. E. G.; Xue, C.; Liu, S.; Meier-Merziger, M.; Karakas, D.; Zhu, L.; Co, I.; Zhao, S.; Chin, A.; McGuigan, A.; Kuruvilla, J.; Laister, R. C.; Shoichet, M. S., Gelatin-Hyaluronan Click-Crosslinked Cryogels Elucidate Human Macrophage Invasion Behavior. Adv. Funct. Mater. 2021, 31 (28), 2008400. https://doi.org/https://doi.org/10.1002/adfm.202008400
885Biz, A.; Mahadevan, R., Overcoming Challenges in Expressing Iron–Sulfur Enzymes in Yeast. Trends Biotechnol. 2021, 39 (7), 665-677. https://doi.org/10.1016/j.tibtech.2020.11.005
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889Chen, J.; Liu, Y.; Diep, P.; Mahadevan, R., Genomic analysis of a newly isolated acidithiobacillus ferridurans jags strain reveals its adaptation to acid mine drainage. Minerals 2021, 11 (1), 1-14. https://doi.org/10.3390/min11010074
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892Edwards, E. A., Electron Balances for Nutrition and Health. J. Nutr. 2021, 151 (2), 277. https://doi.org/10.1093/jn/nxaa372
893Edwards, E. A.; Toth, C. R. A.; Luo, F.; Bawa, N.; Webb, J.; Guo, S.; Dworatzek, S., Anaerobic benzene biodegradation linked to the growth of highly specific bacterial clades. Environ. Sci. Technol. 2021, 55 (12), 7970-7980. https://doi.org/10.1021/acs.est.1c00508
894Gaona, A.; Lawryshyn, Y.; Saville, B. A., High-solids enzymatic hydrolysis of biomass: Hydrodynamics and reaction kinetics integration via numerical modeling. Phys. Fluids 2021, 33 (3), 037107. https://doi.org/10.1063/5.0036138
895Giannari, D.; Ho, C. H.; Mahadevan, R., A gap-filling algorithm for prediction of metabolic interactions in microbial communities. PLoS Comput. Biol. 2021, 17 (11), e1009060. https://doi.org/10.1371/journal.pcbi.1009060
896Haddad Momeni, M.; Fredslund, F.; Bissaro, B.; Raji, O.; Vuong, T. V.; Meier, S.; Nielsen, T. S.; Lombard, V.; Guigliarelli, B.; Biaso, F.; Haon, M.; Grisel, S.; Henrissat, B.; Welner, D. H.; Master, E. R.; Berrin, J. G.; Abou Hachem, M., Discovery of fungal oligosaccharide-oxidising flavo-enzymes with previously unknown substrates, redox-activity profiles and interplay with LPMOs. Nat Commun 2021, 12 (1), 2132. https://doi.org/10.1038/s41467-021-22372-0
897Hameleers, L.; Penttinen, L.; Ikonen, M.; Jaillot, L.; Fauré, R.; Terrapon, N.; Deuss, P. J.; Hakulinen, N.; Master, E. R.; Jurak, E., Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans. Biotechnol Biofuels 2021, 14 (1), 127. https://doi.org/10.1186/s13068-021-01976-0
898Hart, K.; An, S.; Edwards, A. M.; Mahadevan, R.; Master, E. R.; Edwards, E. A., Could open science stimulate industry partnerships in chemical engineering university research? Can. J. Chem. Eng. 2021, 99 (10), 2186-2194. https://doi.org/10.1002/cjce.24077
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900Inglis, A. M.; Head, N. A.; Chowdhury, A. I. A.; Nunez Garcia, A.; Reynolds, D. A.; Hogberg, D.; Edwards, E.; Lomheim, L.; Weber, K.; Wallace, S. J.; Austrins, L. M.; Hayman, J.; Auger, M.; Sidebottom, A.; Eimers, J.; Gerhard, J. I.; O'Carroll, D. M., Electrokinetically-enhanced emplacement of lactate in a chlorinated solvent contaminated clay site to promote bioremediation. Water Res. 2021, 201, 117305. https://doi.org/https://doi.org/10.1016/j.watres.2021.117305
901Jacome, L. A. P.; Lomheim, L.; Gaspard, S.; Edwards, E. A., Biodegradation of Lindane (Hexachlorocyclohexane) to Nontoxic End Products by Sequential Treatment with Three Mixed Anaerobic Microbial Cultures. Environ. Sci. Technol. 2021, 55 (5), 2968-2979. https://doi.org/10.1021/acs.est.0c07221
902Landon-Brace, N.; Cadavid, J. L.; Latour, S.; Co, I. L.; Rodenhizer, D.; Li, N. T.; Wu, N. C.; Bugbee, E.; Chebotarev, A.; Zhang, J.; Wouters, B. G.; McGuigan, A. P., An Engineered Patient-Derived Tumor Organoid Model That Can Be Disassembled to Study Cellular Responses in a Graded 3D Microenvironment. Adv. Funct. Mater. 2021, 31 (41), 2105349. https://doi.org/https://doi.org/10.1002/adfm.202105349
903Latour, S.; McGuigan, A. P., Easy and robust micropatterning using fibrinogen anchors. J. Cell Biol. 2021, 220 (2), e202012105. https://doi.org/10.1083/jcb.202012105
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905Lemak, S.; Serbanescu, M. A.; Khusnutdinova, A. N.; Ruszkowski, M.; Beloglazova, N.; Xu, X.; Brown, G.; Cui, H.; Tan, K.; Joachimiak, A.; Cvitkovitch, D. G.; Savchenko, A.; Yakunin, A. F., Structural and biochemical insights into CRISPR RNA processing by the Cas5c ribonuclease SMU1763 from Streptococcus mutans. J. Biol. Chem. 2021, 297 (5), 101251. https://doi.org/10.1016/j.jbc.2021.101251
906Li, Y.; Khuu, N.; Prince, E.; Tao, H.; Zhang, N.; Chen, Z.; Gevorkian, A.; McGuigan, A. P.; Kumacheva, E., Matrix Stiffness-Regulated Growth of Breast Tumor Spheroids and Their Response to Chemotherapy. Biomacromolecules 2021, 22 (2), 419-429. https://doi.org/10.1021/acs.biomac.0c01287
907Liu, Y.; Benitez, M. G.; Chen, J.; Harrison, E.; Khusnutdinova, A. N.; Mahadevan, R., Opportunities and Challenges for Microbial Synthesis of Fatty Acid-Derived Chemicals (FACs). Front Bioeng Biotechnol 2021, 9, 613322. https://doi.org/10.3389/fbioe.2021.613322
908Lomheim, L.; Flick, R.; Rambinaising, S.; Gaspard, S.; Edwards, E. A., Identification of a fully dechlorinated product of chlordecone in soil microcosms and enrichment cultures. Environ. Sci. Techno. Lett. 2021, 8 (8), 662-667. https://doi.org/10.1021/acs.estlett.1c00505
909MacAlpine, J.; Daniel-Ivad, M.; Liu, Z.; Yano, J.; Revie, N. M.; Todd, R. T.; Stogios, P. J.; Sanchez, H.; O'Meara, T. R.; Tompkins, T. A.; Savchenko, A.; Selmecki, A.; Veri, A. O.; Andes, D. R.; Fidel, P. L., Jr.; Robbins, N.; Nodwell, J.; Whitesell, L.; Cowen, L. E., A small molecule produced by Lactobacillus species blocks Candida albicans filamentation by inhibiting a DYRK1-family kinase. Nat Commun 2021, 12 (1), 6151. https://doi.org/10.1038/s41467-021-26390-w
910Mejdani, M.; Haddadi, K.; Pham, C.; Mahadevan, R., SARS-CoV-2 receptor-binding mutations and antibody contact sites. Antib. ther. 2021, 4 (3), 149-158. https://doi.org/10.1093/abt/tbab015
911Modupe, O.; Diosady, L. L., Quadruple fortification of salt for the delivery of iron, iodine, folic acid, and vitamin B(12) to vulnerable populations. J. Food Eng. 2021, 300, 110525. https://doi.org/10.1016/j.jfoodeng.2021.110525
912Modupe, O.; Krishnaswamy, K.; Li, Y. O.; Diosady, L. L., Optimization of Unit Operations for Microencapsulating Ferrous Fumarate During Scale-Up of Double Fortification of Salt with Iron and Iodine. Food Quality and Safety 2021, 5. https://doi.org/10.1093/fqsafe/fyab023
913Modupe, O.; Siddiqui, J.; Jonnalagadda, A.; Diosady, L. L., Folic acid fortification of double fortified salt. Sci. Rep. 2021, 11 (1), 14561. https://doi.org/10.1038/s41598-021-93194-9
914Nayfach, S.; Roux, S.; Seshadri, R.; Udwary, D.; Varghese, N.; Schulz, F.; Wu, D.; Paez-Espino, D.; Chen, I. M.; Huntemann, M.; Palaniappan, K.; Ladau, J.; Mukherjee, S.; Reddy, T. B. K.; Nielsen, T.; Kirton, E.; Faria, J. P.; Edirisinghe, J. N.; Henry, C. S.; Jungbluth, S. P.; Chivian, D.; Dehal, P.; Wood-Charlson, E. M.; Arkin, A. P.; Tringe, S. G.; Visel, A.; Abreu, H.; Acinas, S. G.; Allen, E.; Allen, M. A.; Alteio, L. V.; Andersen, G.; Anesio, A. M.; Attwood, G.; Avila-Magaña, V.; Badis, Y.; Bailey, J.; Baker, B.; Baldrian, P.; Barton, H. A.; Beck, D. A. C.; Becraft, E. D.; Beller, H. R.; Beman, J. M.; Bernier-Latmani, R.; Berry, T. D.; Bertagnolli, A.; Bertilsson, S.; Bhatnagar, J. M.; Bird, J. T.; Blanchard, J. L.; Blumer-Schuette, S. E.; Bohannan, B.; Borton, M. A.; Brady, A.; Brawley, S. H.; Brodie, J.; Brown, S.; Brum, J. R.; Brune, A.; Bryant, D. A.; Buchan, A.; Buckley, D. H.; Buongiorno, J.; Cadillo-Quiroz, H.; Caffrey, S. M.; Campbell, A. N.; Campbell, B.; Carr, S.; Carroll, J. L.; Cary, S. C.; Cates, A. M.; Cattolico, R. A.; Cavicchioli, R.; Chistoserdova, L.; Coleman, M. L.; Constant, P.; Conway, J. M.; Mac Cormack, W. P.; Crowe, S.; Crump, B.; Currie, C.; Daly, R.; DeAngelis, K. M.; Denef, V.; Denman, S. E.; Desta, A.; Dionisi, H.; Dodsworth, J.; Dombrowski, N.; Donohue, T.; Dopson, M.; Driscoll, T.; Dunfield, P.; Dupont, C. L.; Dynarski, K. A.; Edgcomb, V.; Edwards, E. A.; Elshahed, M. S.; Figueroa, I.; Flood, B.; Fortney, N.; Fortunato, C. S.; Francis, C.; Gachon, C. M. M.; Garcia, S. L.; Gazitua, M. C.; Gentry, T.; Gerwick, L.; Gharechahi, J.; Girguis, P.; Gladden, J.; Gradoville, M.; Grasby, S. E.; Gravuer, K.; Grettenberger, C. L.; Gruninger, R. J.; Guo, J.; Habteselassie, M. Y.; Hallam, S. J.; Hatzenpichler, R.; Hausmann, B.; Hazen, T. C.; Hedlund, B.; Henny, C.; Herfort, L.; Hernandez, M.; Hershey, O. S.; Hess, M.; Hollister, E. B.; Hug, L. A.; Hunt, D.; Jansson, J.; Jarett, J.; Kadnikov, V. V.; Kelly, C.; Kelly, R.; Kelly, W.; Kerfeld, C. A.; Kimbrel, J.; Klassen, J. L.; Konstantinidis, K. T.; Lee, L. L.; Li, W. J.; Loder, A. J.; Loy, A.; Lozada, M.; MacGregor, B.; Magnabosco, C.; Maria da Silva, A.; McKay, R. M.; McMahon, K.; McSweeney, C. S.; Medina, M.; Meredith, L.; Mizzi, J.; Mock, T.; Momper, L.; Moran, M. A.; Morgan-Lang, C.; Moser, D.; Muyzer, G.; Myrold, D.; Nash, M.; Nesbø, C. L.; Neumann, A. P.; Neumann, R. B.; Noguera, D.; Northen, T.; Norton, J.; Nowinski, B.; Nüsslein, K.; O’Malley, M. A.; Oliveira, R. S.; Maia de Oliveira, V.; Onstott, T.; Osvatic, J.; Ouyang, Y.; Pachiadaki, M.; Parnell, J.; Partida-Martinez, L. P.; Peay, K. G.; Pelletier, D.; Peng, X.; Pester, M.; Pett-Ridge, J.; Peura, S.; Pjevac, P.; Plominsky, A. M.; Poehlein, A.; Pope, P. B.; Ravin, N.; Redmond, M. C.; Reiss, R.; Rich, V.; Rinke, C.; Rodrigues, J. L. M.; Rodriguez-Reillo, W.; Rossmassler, K.; Sackett, J.; Salekdeh, G. H.; Saleska, S.; Scarborough, M.; Schachtman, D.; Schadt, C. W.; Schrenk, M.; Sczyrba, A.; Sengupta, A.; Setubal, J. C.; Shade, A.; Sharp, C.; Sherman, D. H.; Shubenkova, O. V.; Sierra-Garcia, I. N.; Simister, R.; Simon, H.; Sjöling, S.; Slonczewski, J.; Correa de Souza, R. S.; Spear, J. R.; Stegen, J. C.; Stepanauskas, R.; Stewart, F.; Suen, G.; Sullivan, M.; Sumner, D.; Swan, B. K.; Swingley, W.; Tarn, J.; Taylor, G. T.; Teeling, H.; Tekere, M.; Teske, A.; Thomas, T.; Thrash, C.; Tiedje, J.; Ting, C. S.; Tully, B.; Tyson, G.; Ulloa, O.; Valentine, D. L.; Van Goethem, M. W.; VanderGheynst, J.; Verbeke, T. J.; Vollmers, J.; Vuillemin, A.; Waldo, N. B.; Walsh, D. A.; Weimer, B. C.; Whitman, T.; van der Wielen, P.; Wilkins, M.; Williams, T. J.; Woodcroft, B.; Woolet, J.; Wrighton, K.; Ye, J.; Young, E. B.; Youssef, N. H.; Yu, F. B.; Zemskaya, T. I.; Ziels, R.; Woyke, T.; Mouncey, N. J.; Ivanova, N. N.; Kyrpides, N. C.; Eloe-Fadrosh, E. A., A genomic catalog of Earth’s microbiomes. Nat. Biotechnol. 2021, 39 (4), 499-509. https://doi.org/10.1038/s41587-020-0718-6
915Nouraei, M.; Collymore, C.; Diosady, L.; Acosta, E., HLD-NAC design and evaluation of a fully dilutable lecithin-linker SMEDDS for ibuprofen. Int J Pharm 2021, 610, 121237. https://doi.org/10.1016/j.ijpharm.2021.121237
916Pandit, A. V.; Harrison, E.; Mahadevan, R., Engineering Escherichia coli for the utilization of ethylene glycol. Microbial Cell Factories 2021, 20 (1), 22. https://doi.org/10.1186/s12934-021-01509-2
917Paraskevopoulos, M.; McGuigan, A. P., Application of CRISPR screens to investigate mammalian cell competition. Brief. Funct. Genomics 2021, 20 (3), 135-147. https://doi.org/10.1093/bfgp/elab020
918Pieters, V. M.; Co, I. L.; Wu, N. C.; McGuigan, A. P., Applications of Omics Technologies for Three-Dimensional in Vitro Disease Models. Tissue Eng. Part. C Methods 2021, 27 (3), 183-199. https://doi.org/10.1089/ten.tec.2020.0300
919Raj, K.; Venayak, N.; Diep, P.; Golla, S. A.; Yakunin, A. F.; Mahadevan, R., Automation assisted anaerobic phenotyping for metabolic engineering. Microb Cell Fact 2021, 20 (1), 184. https://doi.org/10.1186/s12934-021-01675-3
920Raji, O.; Arnling Bååth, J.; Vuong, T. V.; Larsbrink, J.; Olsson, L.; Master, E. R., The coordinated action of glucuronoyl esterase and α-glucuronidase promotes the disassembly of lignin–carbohydrate complexes. FEBS Lett. 2021, 595 (3), 351-359. https://doi.org/10.1002/1873-3468.14019
921Saffarionpour, S.; Diosady, L. L., Multiple Emulsions for Enhanced Delivery of Vitamins and Iron Micronutrients and Their Application for Food Fortification. Food and Bioprocess Technology 2021, 14 (4), 587-625. https://doi.org/10.1007/s11947-021-02586-2
922Saffarionpour, S.; Diosady, L. L., Preparation of iron-loaded water-in-oil-in-water (W1/O/W2) double emulsions: optimization using response surface methodology. J. Dispersion Sci. Technol. 2021, 1-10. https://doi.org/10.1080/01932691.2021.2008422
923Schneider, P.; Mahadevan, R.; Klamt, S., Systematizing the different notions of growth-coupled product synthesis and a single framework for computing corresponding strain designs. Biotechnol. J. 2021, 16 (12), e2100236. https://doi.org/10.1002/biot.202100236
924Soleas, J. P.; Huang, L.; D’Arcangelo, E.; Nostro, M. C.; Waddell, T. K.; McGuigan, A. P.; Karoubi, G., Guided Self-Assembly of ES-Derived Lung Progenitors into Biomimetic Tube Structures That Impact Cell Differentiation. Bioengineering 2021, 8 (12), 209. https://doi.org/10.3390/bioengineering8120209
925Stephens, S.; Mahadevan, R.; Allen, D. G., Engineering Photosynthetic Bioprocesses for Sustainable Chemical Production: A Review. Frontiers in Bioengineering and Biotechnology 2021, 8. https://doi.org/10.3389/fbioe.2020.610723
926Vatandoust, A.; Mannar, M. G. V.; Diosady, L. L., Organoleptic Effects of Salt Fortification with Iron and Iodine: A Review. J. Nutr. 2021, 151 (7), 1690-1702. https://doi.org/10.1093/jn/nxab078
927Vuong, T. V.; Singh, R.; Eltis, L. D.; Master, E. R., The Comparative Abilities of a Small Laccase and a Dye-Decoloring Peroxidase From the Same Bacterium to Transform Natural and Technical Lignins. Front. Microbiol. 2021, 12, 723524. https://doi.org/10.3389/fmicb.2021.723524
928Wu, B.; Gaskell, J.; Held, B. W.; Toapanta, C.; Vuong, T. V.; Ahrendt, S.; Lipzen, A.; Zhang, J.; Schilling, J. S.; Master, E.; Grigoriev, I. V.; Blanchette, R. A.; Cullen, D.; Hibbett, D. S., Retracted and Republished from: "Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola". Appl Environ Microbiol 2021, 87 (16), e0032921. https://doi.org/10.1128/aem.00329-21
929Yan, R.; Wang, W.; Vuong, T. V.; Xiu, Y.; Skarina, T.; Di Leo, R.; Gatenholm, P.; Toriz, G.; Tenkanen, M.; Stogios, P. J.; Master, E. R., Structural characterization of the family GH115 α-glucuronidase from Amphibacillus xylanus yields insight into its coordinated action with α-arabinofuranosidases. N. Biotechnol. 2021, 62, 49-56. https://doi.org/10.1016/j.nbt.2021.01.005
930Zhu, L.; Pei, W.; DiCiano, P.; Brands, B.; Wickens, C. M.; Foll, B. L.; Kwong, B.; Parashar, M.; Sivananthan, A.; Mahadevan, R., Physiologically-based pharmacokinetic model for predicting blood and tissue tetrahydrocannabinol concentrations. Comput. Chem. Eng. 2021, 154, 107461. https://doi.org/https://doi.org/10.1016/j.compchemeng.2021.107461
931Zhu, L.; Pei, W.; Thiele, I.; Mahadevan, R., Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism. PLoS Comput. Biol. 2021, 17 (8), e1009110. https://doi.org/10.1371/journal.pcbi.1009110
932Arefmanesh, M.; Nikafshar, S.; Master, E. R.; Nejad, M., From acetone fractionation to lignin-based phenolic and polyurethane resins. Industrial Crops and Products 2022, 178, 114604. https://doi.org/https://doi.org/10.1016/j.indcrop.2022.114604
933Arefmanesh, M.; Vuong, T. V.; Nikafshar, S.; Wallmo, H.; Nejad, M.; Master, E. R., Enzymatic synthesis of kraft lignin-acrylate copolymers using an alkaline tolerant laccase. Applied Microbiology and Biotechnology 2022, 106 (8), 2969-2979. https://doi.org/10.1007/s00253-022-11916-z
934Arellano-Saab, A.; McErlean, C. S. P.; Lumba, S.; Savchenko, A.; Stogios, P. J.; McCourt, P., A novel strigolactone receptor antagonist provides insights into the structural inhibition, conditioning, and germination of the crop parasite Striga. J. Biol. Chem. 2022, 298 (4), 101734. https://doi.org/10.1016/j.jbc.2022.101734
935Cadavid, J. L.; Latour, S.; Nowlan, F.; Co, I. L.; Landon-Brace, N.; Wouters, B. G.; Grünwald, B. T.; Nitz, M.; Jackson, H. W.; McGuigan, A. P., An Engineered Paper-Based 3D Coculture Model of Pancreatic Cancer to Study the Impact of Tissue Architecture and Microenvironmental Gradients on Cell Phenotype. Advanced Healthcare Materials 2022, n/a (n/a), 2201846. https://doi.org/https://doi.org/10.1002/adhm.202201846
936Chan, P. W. Y.; Chakrabarti, N.; Ing, C.; Halgas, O.; To, T. K. W.; Wälti, M.; Petit, A.-P.; Tran, C.; Savchenko, A.; Yakunin, A. F.; Edwards, E. A.; Pomès, R.; Pai, E. F., Defluorination Capability of l-2-Haloacid Dehalogenases in the HAD-Like Hydrolase Superfamily Correlates with Active Site Compactness. ChemBioChem 2022, 23 (1), e202100414. https://doi.org/https://doi.org/10.1002/cbic.202100414
937Chen, J.; Liu, Y.; Diep, P.; Mahadevan, R., Genetic engineering of extremely acidophilic Acidithiobacillus species for biomining: Progress and perspectives. J. Hazard. Mater. 2022, 438, 129456. https://doi.org/10.1016/j.jhazmat.2022.129456
938Chen, J.; Liu, Y.; Diep, P.; Mahadevan, R., Harnessing synthetic biology for sustainable biomining with Fe/S-oxidizing microbes. Front Bioeng Biotechnol 2022, 10, 920639. https://doi.org/10.3389/fbioe.2022.920639
939Cheung, S. L.; Short, S. M.; Allen, D. G., The influence of wastewater pretreatment, attachment material, and inoculation strategy on the growth of target algal species in cultivated biofilms. J. Appl. Phycol. 2022, 34 (1), 113-125. https://doi.org/10.1007/s10811-021-02637-3
940Cruz, M. R.; Cristy, S.; Guha, S.; De Cesare, G. B.; Evdokimova, E.; Sanchez, H.; Borek, D.; Miramón, P.; Yano, J.; Fidel, P. L., Jr.; Savchenko, A.; Andes, D. R.; Stogios, P. J.; Lorenz, M. C.; Garsin, D. A., Structural and functional analysis of EntV reveals a 12 amino acid fragment protective against fungal infections. Nat Commun 2022, 13 (1), 6047. https://doi.org/10.1038/s41467-022-33613-1
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942Davoudi, S.; Xu, B.; Jacques, E.; Cadavid, J. L.; McFee, M.; Chin, C.-Y.; Meysami, A.; Ebrahimi, M.; Bakooshli, M. A.; Tung, K.; Ahn, H.; Ginsberg, H. J.; McGuigan, A. P.; Gilbert, P. M., MEndR: An In Vitro Functional Assay to Predict In Vivo Muscle Stem Cell-Mediated Repair. Adv. Funct. Mater. 2022, 32 (2), 2106548. https://doi.org/https://doi.org/10.1002/adfm.202106548
943Diep, P.; Cadavid, J. L.; Yakunin, A. F.; McGuigan, A. P.; Mahadevan, R., REVOLVER: A low-cost automated protein purifier based on parallel preparative gravity column workflows. HardwareX 2022, 11, e00291. https://doi.org/10.1016/j.ohx.2022.e00291
944Du Bois, A. C.; Xue, A.; Pham, C.; Revie, N. M.; Meyer, K. J.; Yashiroda, Y.; Boone, C.; Nodwell, J. R.; Stogios, P.; Savchenko, A.; Robbins, N.; Iyer, K. R.; Cowen, L. E., High-Throughput Chemical Screen Identifies a 2,5-Disubstituted Pyridine as an Inhibitor of Candida albicans Erg11. mSphere 2022, 7 (3), e0007522. https://doi.org/10.1128/msphere.00075-22
945Euler, C.; Mahadevan, R., On the design principles of metabolic flux sensing. Biophys. J. 2022, 121 (2), 237-247. https://doi.org/10.1016/j.bpj.2021.12.022
946Gonçalves, M. C. P.; Romanelli, J. P.; Cansian, A. B. M.; Pucci, E. F. Q.; Guimarães, J. R.; Tardioli, P. W.; Saville, B. A., A review on the production and recovery of sugars from lignocellulosics for use in the synthesis of bioproducts. Industrial Crops and Products 2022, 186, 115213. https://doi.org/https://doi.org/10.1016/j.indcrop.2022.115213
947Guo, S.; Toth, C. R. A.; Luo, F.; Chen, X.; Xiao, J.; Edwards, E. A., Transient Oxygen Exposure Causes Profound and Lasting Changes to a Benzene-Degrading Methanogenic Community. Environ Sci Technol 2022, 56 (18), 13036-13045. https://doi.org/10.1021/acs.est.2c02624
948Haas, D.; Thamm, A. M.; Sun, J.; Huang, L.; Sun, L.; Beaudoin, G. A. W.; Wise, K. S.; Lerma-Ortiz, C.; Bruner, S. D.; Breuer, M.; Luthey-Schulten, Z.; Lin, J.; Wilson, M. A.; Brown, G.; Yakunin, A. F.; Kurilyak, I.; Folz, J.; Fiehn, O.; Glass, J. I.; Hanson, A. D.; Henry, C. S.; de Crécy-Lagard, V., Metabolite Damage and Damage Control in a Minimal Genome. mBio 2022, 13 (4), e0163022. https://doi.org/10.1128/mbio.01630-22
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950Hayes, A. C.; Nesbø, C.; Edwards, E. A.; Jenson, E., Anaerobic Digestion of Kraft Pulp Mill Foul Condensate Under Thermophilic and Mesophilic Conditions. Environ. Eng. Sci. 2022, 39 (6), 573-583. https://doi.org/10.1089/ees.2021.0183
951Hezaveh, K.; Shinde, R. S.; Klötgen, A.; Halaby, M. J.; Lamorte, S.; Ciudad, M. T.; Quevedo, R.; Neufeld, L.; Liu, Z. Q.; Jin, R.; Grünwald, B. T.; Foerster, E. G.; Chaharlangi, D.; Guo, M.; Makhijani, P.; Zhang, X.; Pugh, T. J.; Pinto, D. M.; Co, I. L.; McGuigan, A. P.; Jang, G. H.; Khokha, R.; Ohashi, P. S.; O'Kane, G. M.; Gallinger, S.; Navarre, W. W.; Maughan, H.; Philpott, D. J.; Brooks, D. G.; McGaha, T. L., Tryptophan-derived microbial metabolites activate the aryl hydrocarbon receptor in tumor-associated macrophages to suppress anti-tumor immunity. Immunity 2022, 55 (2), 324-340.e8. https://doi.org/10.1016/j.immuni.2022.01.006
952Li, J.; Goddard-Borger, E. D.; Raji, O.; Saxena, H.; Solhi, L.; Mathieu, Y.; Master, E. R.; Wakarchuk, W. W.; Brumer, H., Chitin-Active Lytic Polysaccharide Monooxygenases Are Rare in Cellulomonas Species. Appl Environ Microbiol 2022, 88 (15), e0096822. https://doi.org/10.1128/aem.00968-22
953Li, N. T.; Wu, N. C.; Cao, R.; Cadavid, J. L.; Latour, S.; Lu, X.; Zhu, Y.; Mijalkovic, M.; Roozitalab, R.; Landon-Brace, N.; Notta, F.; McGuigan, A. P., An off-the-shelf multi-well scaffold-supported platform for tumour organoid-based tissues. Biomaterials 2022, 291, 121883. https://doi.org/10.1016/j.biomaterials.2022.121883
954Liu, Y.; Khusnutdinova, A.; Chen, J.; Crisante, D.; Batyrova, K.; Raj, K.; Feigis, M.; Shirzadi, E.; Wang, X.; Dorakhan, R.; Wang, X.; Stogios, P. J.; Yakunin, A. F.; Sargent, E. H.; Mahadevan, R., Systems engineering of Escherichia coli for n-butane production. Metab. Eng. 2022, 74, 98-107. https://doi.org/10.1016/j.ymben.2022.10.001
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956Manchel, A.; Hoek, J. B.; Bataller, R.; Mahadevan, R.; Vadigepalli, R., Patient-Specific Genome-Scale Metabolic Models for Individualized Predictions of Liver Disease. IFAC-PapersOnLine 2022, 55 (23), 148-149. https://doi.org/https://doi.org/10.1016/j.ifacol.2023.01.032
957Manchel, A.; Mahadevan, R.; Bataller, R.; Hoek, J. B.; Vadigepalli, R., Genome-Scale Metabolic Modeling Reveals Sequential Dysregulation of Glutathione Metabolism in Livers from Patients with Alcoholic Hepatitis. Metabolites 2022, 12 (12). https://doi.org/10.3390/metabo12121157
958Modupe, O.; Krishnaswamy, K.; Siddiqui, J.; Li, Y. O.; Diosady, L. L., Development and scale-up of microencapsulation-based technology for multimicronutrient fortification of salt. In Microencapsulation in the Food Industry: A Practical Implementation Guide, Elsevier: 2022; pp 529-553. https://doi.org/10.1016/B978-0-12-821683-5.00012-1
959Modupe, O.; Li, Y. O.; Diosady, L. L., Optimization of the color masking and coating unit operations for microencapsulating ferrous fumarate for double fortification of salt. J. Food Sci. Technol. 2022, 59 (8), 3120-3129. https://doi.org/10.1007/s13197-022-05426-z
960Monschein, M.; Jurak, E.; Paasela, T.; Koitto, T.; Lambauer, V.; Pavicic, M.; Enjalbert, T.; Dumon, C.; Master, E. R., PACER: a novel 3D plant cell wall model for the analysis of non-catalytic and enzymatic responses. Biotechnol Biofuels Bioprod 2022, 15 (1), 30. https://doi.org/10.1186/s13068-022-02128-8
961Nouri, S.; Holcroft, J.; Caruso, L. L.; Vuong, T. V.; Simmons, C. A.; Master, E. R.; Ganss, B., An SCPPPQ1/LAM332 protein complex enhances the adhesion and migration of oral epithelial cells: Implications for dentogingival regeneration. Acta Biomater. 2022, 147, 209-220. https://doi.org/10.1016/j.actbio.2022.05.035
962Peng, J.; Sun, J.; Yang, M. I.; Gibson, R. M.; Arts, E. J.; Olabode, A. S.; Poon, A. F. Y.; Wang, X.; Wheeler, A. R.; Edwards, E. A.; Peng, H., Early Warning Measurement of SARS-CoV-2 Variants of Concern in Wastewaters by Mass Spectrometry. Environmental Science & Technology Letters 2022, 9 (7), 638-644. https://doi.org/10.1021/acs.estlett.2c00280
963Penttinen, L.; Kouhi, V.; Fauré, R.; Skarina, T.; Stogios, P.; Master, E.; Jurak, E., Elucidating Sequence and Structural Determinants of Carbohydrate Esterases for Complete Deacetylation of Substituted Xylans. Molecules 2022, 27 (9), 2655. https://doi.org/10.3390/molecules27092655
964Peter, J. S.; Sean, D. L.; Cameron, S.; Bradley, Q.; Karolina, M.; Elena, E.; Shane, R.; Zbyszek, O.; Dominika, B.; Leah, E. C.; Alexei, S., Molecular analysis and essentiality of Aro1 shikimate biosynthesis multi-enzyme in Candida albicans. Life Science Alliance 2022, 5 (8), e202101358. https://doi.org/10.26508/lsa.202101358
965Pham, C.; Stogios, P. J.; Savchenko, A.; Mahadevan, R., Advances in engineering and optimization of transcription factor-based biosensors for plug-and-play small molecule detection. Curr. Opin. Biotechnol. 2022, 76, 102753. https://doi.org/10.1016/j.copbio.2022.102753
966Phillips, E.; Bergquist, B. A.; Chartrand, M. M. G.; Chen, W.; Edwards, E. A.; Elsner, M.; Gilevska, T.; Hirschorn, S.; Horst, A.; Lacrampe-Couloume, G.; Mancini, S. A.; McKelvie, J.; Morrill, P. L.; Ojeda, A. S.; Slater, G. F.; Sleep, B. E.; De Vera, J.; Warr, O.; Passeport, E., Compound specific isotope analysis in hydrogeology. Journal of Hydrology 2022, 615, 128588. https://doi.org/https://doi.org/10.1016/j.jhydrol.2022.128588
967Phillips, E.; Bulka, O.; Picott, K.; Kümmel, S.; Edwards, E. A.; Nijenhuis, I.; Gehre, M.; Dworatzek, S.; Webb, J.; Sherwood Lollar, B., Investigation of active site amino acid influence on carbon and chlorine isotope fractionation during reductive dechlorination. FEMS Microbiol. Ecol. 2022, 98 (8). https://doi.org/10.1093/femsec/fiac072
968Picott, K. J.; Flick, R.; Edwards, E. A., Heterologous Expression of Active Dehalobacter Respiratory Reductive Dehalogenases in Escherichia coli. Appl Environ Microbiol 2022, 88 (3), e0199321. https://doi.org/10.1128/aem.01993-21
969Pieters, V. M.; Rjaibi, S. T.; Singh, K.; Li, N. T.; Khan, S. T.; Nunes, S. S.; Dal Cin, A.; Gilbert, P. M.; McGuigan, A. P., A three-dimensional human adipocyte model of fatty acid-induced obesity. Biofabrication 2022, 14 (4), 045009. https://doi.org/10.1088/1758-5090/ac84b1
970Pileggi, V.; Shurgold, J.; Sun, J. S.; Yang, M. I.; Edwards, E. A.; Peng, H.; Tehrani, A.; Gilbride, K. A.; Oswald, C. J.; Wijayasri, S.; Al-Bargash, D.; Stuart, R.; Khansari, Z.; Raby, M.; Thomas, J.; Fletcher, T.; Simhon, A., Quantitative Trend Analysis of SARS-CoV-2 RNA in Municipal Wastewater Exemplified with Sewershed-Specific COVID-19 Clinical Case Counts. ACS ES&T Water 2022, 2 (11), 2070-2083. https://doi.org/10.1021/acsestwater.2c00058
971Prince, E.; Cruickshank, J.; Ba-Alawi, W.; Hodgson, K.; Haight, J.; Tobin, C.; Wakeman, A.; Avoulov, A.; Topolskaia, V.; Elliott, M. J.; McGuigan, A. P.; Berman, H. K.; Haibe-Kains, B.; Cescon, D. W.; Kumacheva, E., Biomimetic hydrogel supports initiation and growth of patient-derived breast tumor organoids. Nat Commun 2022, 13 (1), 1466. https://doi.org/10.1038/s41467-022-28788-6
972Prince, E.; Kheiri, S.; Wang, Y.; Xu, F.; Cruickshank, J.; Topolskaia, V.; Tao, H.; Young, E. W. K.; McGuigan, A. P.; Cescon, D. W.; Kumacheva, E., Microfluidic Arrays of Breast Tumor Spheroids for Drug Screening and Personalized Cancer Therapies. Advanced Healthcare Materials 2022, 11 (1), 2101085. https://doi.org/https://doi.org/10.1002/adhm.202101085
973Puri, S.; Rekhi, T. K.; Thomas, T.; Jadhav, M. H.; Mannar, V.; Diosady, L. L., Sensory Trial of Quintuple Fortified Salt-Salt Fortified With Iodine, Iron, Folic Acid, Vitamin B(12), and Zinc-Among Consumers in New Delhi, India. Food Nutr. Bull. 2022, 43 (3), 340-350. https://doi.org/10.1177/03795721221078361
974Qiao, W.; Liu, G.; Li, M.; Su, X.; Lu, L.; Ye, S.; Wu, J.; Edwards, E. A.; Jiang, J., Complete Reductive Dechlorination of 4-Hydroxy-chlorothalonil by Dehalogenimonas Populations. Environ Sci Technol 2022, 56 (17), 12237-12246. https://doi.org/10.1021/acs.est.2c02574
975Sabat, G.; Ahrendt, S.; Wu, B.; Gaskell, J.; Held, B. W.; Toapanta, C.; Vuong, T. V.; Lipzen, A.; Zhang, J.; Schilling, J. S.; Master, E.; Grigoriev, I. V.; Blanchette, R. A.; Hibbett, D. S.; Bhatnagar, J.; Cullen, D., Proteome of the Wood Decay Fungus Fomitopsis pinicola Is Altered by Substrate. Microbiol Resour Announc 2022, 11 (9), e0058622. https://doi.org/10.1128/mra.00586-22
976Saffarionpour, S.; Diosady, L. L., Delivery of Ferric Sodium EDTA by Water-in-Oil-in-Water (W1/O/W2) Double Emulsions: Influence of Carrier Oil on its in Vitro Bioaccessibility. Food and Bioprocess Technology 2022, 15 (2), 421-439. https://doi.org/10.1007/s11947-021-02756-2
977Saffarionpour, S.; Diosady, L. L., Delivery of curcumin through colloidal systems and its applications in functional foods. Current Opinion in Food Science 2022, 43, 155-162. https://doi.org/https://doi.org/10.1016/j.cofs.2021.12.003
978Saffarionpour, S.; Diosady, L. L., The influence of iron source, hydrophilic emulsifiers, and positioning of encapsulates on in vitro bioaccessibility and simultaneous delivery of iron and curcumin by water-in-oil-in-water (W1/O/W2) double emulsions. Journal of Food Measurement and Characterization 2022, 1-22. https://doi.org/10.1007/s11694-022-01691-w
979Saffarionpour, S.; Diosady, L. L., Curcumin, a potent therapeutic nutraceutical and its enhanced delivery and bioaccessibility by pickering emulsions. Drug Deliv Transl Res 2022, 12 (1), 124-157. https://doi.org/10.1007/s13346-021-00936-3
980Scarborough, M. J.; Lawson, C. E.; DeCola, A. C.; Gois, I. M., Microbiomes for sustainable biomanufacturing. Curr. Opin. Microbiol. 2022, 65, 8-14. https://doi.org/10.1016/j.mib.2021.09.015
981Siddiqui, J.; Modupe, O.; Vatandoust, A.; Diosady, L. L., Predicting the Stability of Double Fortified Salt by Determining the Coating Quality of the Encapsulated Iron Premix. J. Food Qual. 2022, 2022, 7812022. https://doi.org/10.1155/2022/7812022
982Sonawane, J. M.; Mahadevan, R.; Pandey, A.; Greener, J., Recent progress in microbial fuel cells using substrates from diverse sources. Heliyon 2022, 8 (12), e12353. https://doi.org/10.1016/j.heliyon.2022.e12353
983Stogios, P. J.; Bordeleau, E.; Xu, Z.; Skarina, T.; Evdokimova, E.; Chou, S.; Diorio-Toth, L.; D'Souza, A. W.; Patel, S.; Dantas, G.; Wright, G. D.; Savchenko, A., Structural and molecular rationale for the diversification of resistance mediated by the Antibiotic_NAT family. Commun Biol 2022, 5 (1), 263. https://doi.org/10.1038/s42003-022-03219-w
984Turner, M.; Saville, B., Technoeconomic evaluation of protein-rich animal feed and ethanol production from palm kernel cake. Biofuels, Bioproducts and Biorefining 2022, 16 (1), 105-121. https://doi.org/10.1002/bbb.2259
985Varma, R.; Poon, J.; Liao, Z.; Aitchison, J. S.; Waddell, T. K.; Karoubi, G.; McGuigan, A. P., Planar organization of airway epithelial cell morphology using hydrogel grooves during ciliogenesis fails to induce ciliary alignment. Biomaterials Science 2022, 10 (2), 396-409. https://doi.org/10.1039/d1bm01327k
986Vatandoust, A.; Diosady, L., Iron compounds and their organoleptic properties in salt fortification with iron and iodine: an overview. Current Opinion in Food Science 2022, 43, 232-236. https://doi.org/https://doi.org/10.1016/j.cofs.2021.12.007
987Venkatesan, M.; Semper, C.; Skrivergaard, S.; Di Leo, R.; Mesa, N.; Rasmussen, M. K.; Young, J. F.; Therkildsen, M.; Stogios, P. J.; Savchenko, A., Recombinant production of growth factors for application in cell culture. iScience 2022, 25 (10), 105054. https://doi.org/10.1016/j.isci.2022.105054
988Vuong, T. V.; Master, E. R., Enzymatic upgrading of heteroxylans for added-value chemicals and polymers. Curr. Opin. Biotechnol. 2022, 73, 51-60. https://doi.org/10.1016/j.copbio.2021.07.001
989Wu, N. C.; Cadavid, J. L.; Tan, X.; Latour, S.; Scaini, S.; Makhijani, P.; McGaha, T. L.; Ailles, L.; McGuigan, A. P., 3D microgels to quantify tumor cell properties and therapy response dynamics. Biomaterials 2022, 283, 121417. https://doi.org/10.1016/j.biomaterials.2022.121417
990Xu, Z.; Mahadevan, R., Efficient Enumeration of Branched Novel Biochemical Pathways Using a Probabilistic Technique. Ind. Eng. Chem. Res. 2022, 61 (25), 8645-8657. https://doi.org/10.1021/acs.iecr.1c02211
991Yi, S.; Morson, N.; Edwards, E. A.; Yang, D.; Liu, R.; Zhu, L.; Mabury, S. A., Anaerobic Microbial Dechlorination of 6:2 Chlorinated Polyfluorooctane Ether Sulfonate and the Underlying Mechanisms. Environ. Sci. Technol. 2022, 56 (2), 907-916. https://doi.org/10.1021/acs.est.1c05475
992Zhang, X.; Kushner, P. J.; Saville, B. A.; Posen, I. D., Cold Temperature Limits to Biodiesel Use under Present and Future Climates in North America. Environ. Sci. Technol. 2022, 56 (12), 8640-8649. https://doi.org/10.1021/acs.est.2c01699
993Zhao, H.; Karppi, J.; Nguyen, T. T. M.; Bellemare, A.; Tsang, A.; Master, E.; Tenkanen, M., Characterization of a novel AA3_1 xylooligosaccharide dehydrogenase from Thermothelomyces myriococcoides CBS 398.93. Biotechnol Biofuels Bioprod 2022, 15 (1), 135. https://doi.org/10.1186/s13068-022-02231-w
994Ghazisaidi, H.; Tran, H.; Meyer, T.; Allen, D. G., Enhancement of biosludge dewatering using proteins through dual conditioning. The Canadian Journal of Chemical Engineering 2023, 101 (6), 3226-3233. https://doi.org/https://doi.org/10.1002/cjce.24705
995Ghazisaidi, H.; Wang, V.; Fatehi, P.; Tran, H.; Meyer, T.; Allen, D. G., Determining the performance of lignin-based flocculants in improving biosludge dewaterability. J. Environ. Manage. 2023, 325. https://doi.org/10.1016/j.jenvman.2022.116509
996Mdoe, P.; Mannar, V.; Paulo, B.; Guga, G.; Mushi, C.; Kimathi, C.; Paschal, J.; Jatosh, S.; Assey, V.; Abdallah, F.; Mduma, E.; Diosady, L., Multiple micronutrients fortified salt: consumers’ acceptability survey, Tanzania. BMC Public Health 2023, 23 (1), 73. https://doi.org/10.1186/s12889-023-15000-7
997Venkatesan, M.; Fruci, M.; Verellen, L. A.; Skarina, T.; Mesa, N.; Flick, R.; Pham, C.; Mahadevan, R.; Stogios, P. J.; Savchenko, A., Molecular mechanism of plasmid-borne resistance to sulfonamide antibiotics. Nat Commun 2023, 14 (1), 4031. https://doi.org/10.1038/s41467-023-39778-7
998Yan, S.; Cheng, K. Y.; Bohu, T.; Morris, C.; Lomheim, L.; Yang, I.; Ginige, M. P.; Edwards, E.; Zheng, G.; Zhou, L.; Kaksonen, A. H., Microbial community dynamics in a feedback-redox controlled bioreactor process that enabled sequential selenate, nitrate and sulfate removal, and elemental selenium recovery. Journal of Water Process Engineering 2023, 54, 103881. https://doi.org/https://doi.org/10.1016/j.jwpe.2023.103881
999de Oliveira, R. D.; Le Roux, G. A. C.; Mahadevan, R., Nonlinear programming reformulation of dynamic flux balance analysis models. Comput. Chem. Eng. 2023, 170, 108101. https://doi.org/https://doi.org/10.1016/j.compchemeng.2022.108101
1000Liu, Y.; Chen, J.; Raj, K.; Baerg, L.; Nathan, N.; Philpott, D. J.; Mahadevan, R., A Universal Strategy to Promote Secretion of G+/G- Bacterial Extracellular Vesicles and Its Application in Host Innate Immune Responses. ACS Synthetic Biology 2023, 12 (1), 319-328. https://doi.org/10.1021/acssynbio.2c00583
1001Derba-Maceluch, M.; Mitra, M.; Hedenström, M.; Liu, X.; Gandla, M. L.; Barbut, F. R.; Abreu, I. N.; Donev, E. N.; Urbancsok, J.; Moritz, T.; Jönsson, L. J.; Tsang, A.; Powlowski, J.; Master, E. R.; Mellerowicz, E. J., Xylan glucuronic acid side chains fix suberin-like aliphatic compounds to wood cell walls. New Phytol. 2023, 238 (1), 297-312. https://doi.org/10.1111/nph.18712
1002Khan, S.; Shoaib, M.; Molaei, N.; Wani, O. B.; Chen, Z.; Vuong, T. V.; Roth, E. W.; Fiddes, L. K.; Kuzmenko, I.; Master, E. R.; Bobicki, E. R., Cellulose Nanocrystals’ Role in Critical Mineral Beneficiation: Dual Aggregate-Dispersant Behavior Supports Environmentally Benign Nickel Processing. ACS Sustainable Chem. Eng. 2023, 11 (4), 1294-1304. https://doi.org/10.1021/acssuschemeng.2c05923
1003Monschein, M.; Ioannou, E.; Koitto, T.; Al Amin, L.; Varis, J. J.; Wagner, E. R.; Mikkonen, K. S.; Cosgrove, D. J.; Master, E. R., Loosenin-Like Proteins from Phanerochaete carnosa Impact Both Cellulose and Chitin Fiber Networks. Appl Environ Microbiol 2023, 89 (1), e0186322. https://doi.org/10.1128/aem.01863-22
1004Distaso, M. A.; Chernikova, T. N.; Bargiela, R.; Coscolín, C.; Stogios, P.; Gonzalez-Alfonso, J. L.; Lemak, S.; Khusnutdinova, A. N.; Plou, F. J.; Evdokimova, E.; Savchenko, A.; Lunev, E. A.; Yakimov, M. M.; Golyshina, O. V.; Ferrer, M.; Yakunin, A. F.; Golyshin, P. N., Thermophilic Carboxylesterases from Hydrothermal Vents of the Volcanic Island of Ischia Active on Synthetic and Biobased Polymers and Mycotoxins. Appl Environ Microbiol 2023, 89 (2), e0170422. https://doi.org/10.1128/aem.01704-22
1005Popov, G.; Fiebig-Comyn, A.; Syriste, L.; Little, D. J.; Skarina, T.; Stogios, P. J.; Birstonas, S.; Coombes, B. K.; Savchenko, A., Distinct Molecular Features of NleG Type 3 Secreted Effectors Allow for Different Roles during Citrobacter rodentium Infection in Mice. Infect Immun 2023, 91 (1), e0050522. https://doi.org/10.1128/iai.00505-22
1006Okeke, I. J.; Saville, B. A.; MacLean, H. L., Low carbon hydrogen production in Canada via natural gas pyrolysis. Int. J. Hydrogen Energy 2023, 48 (34), 12581-12599. https://doi.org/https://doi.org/10.1016/j.ijhydene.2022.12.169
1007Karlikow, M.; Amalfitano, E.; Yang, X.; Doucet, J.; Chapman, A.; Mousavi, P. S.; Homme, P.; Sutyrina, P.; Chan, W.; Lemak, S.; Yakunin, A. F.; Dolezal, A. G.; Kelley, S.; Foster, L. J.; Harpur, B. A.; Pardee, K., CRISPR-induced DNA reorganization for multiplexed nucleic acid detection. Nat Commun 2023, 14 (1), 1505. https://doi.org/10.1038/s41467-023-36874-6
1008Guo, Y.; Karimullina, E.; Emde, T.; Otwinowski, Z.; Borek, D.; Savchenko, A., Monomer and dimer structures of cytochrome bo(3) ubiquinol oxidase from Escherichia coli. Protein Sci. 2023, 32 (4), e4616. https://doi.org/10.1002/pro.4616
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1010Lash, E.; Prudent, V.; Stogios, P. J.; Savchenko, A.; Noble, S. M.; Robbins, N.; Cowen, L. E., Ent2 Governs Morphogenesis and Virulence in Part through Regulation of the Cdc42 Signaling Cascade in the Fungal Pathogen Candida albicans. mBio 2023, 14 (2), e0343422. https://doi.org/10.1128/mbio.03434-22
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1012Cao, R.; Li, N. T.; Latour, S.; Cadavid, J. L.; Tan, C. M.; Forman, A.; Jackson, H. W.; McGuigan, A. P., An Automation Workflow for High-Throughput Manufacturing and Analysis of Scaffold-Supported 3D Tissue Arrays. Adv Healthc Mater 2023, e2202422. https://doi.org/10.1002/adhm.202202422
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1014Fuzzen, M.; Harper, N. B. J.; Dhiyebi, H. A.; Srikanthan, N.; Hayat, S.; Bragg, L. M.; Peterson, S. W.; Yang, I.; Sun, J. X.; Edwards, E. A.; Giesy, J. P.; Mangat, C. S.; Graber, T. E.; Delatolla, R.; Servos, M. R., An improved method for determining frequency of multiple variants of SARS-CoV-2 in wastewater using qPCR assays. Sci. Total Environ. 2023, 881, 163292. https://doi.org/10.1016/j.scitotenv.2023.163292
1015Diep, P.; Leo Shen, H.; Wiesner, J. A.; Mykytczuk, N.; Papangelakis, V.; Yakunin, A. F.; Mahadevan, R., Engineered nickel bioaccumulation in Escherichia coli by NikABCDE transporter and metallothionein overexpression. Eng. Life Sci. 2023. https://doi.org/10.1002/elsc.202200133
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1017Arellano-Saab, A.; Skarina, T.; Xu, Z.; McErlean, C. S. P.; Savchenko, A.; Lumba, S.; Stogios, P. J.; McCourt, P., Structural analysis of a hormone-bound Striga strigolactone receptor. Nat Plants 2023. https://doi.org/10.1038/s41477-023-01423-y
1018Siddiqui, J.; McGee, E. J. T.; Mhasavade, D.; Palagiri, S.; Balamurugan, V.; Diosady, L. L., Spray Encapsulation of Iron in Chitosan Biopolymer for Tea Fortification. J. Food Qual. 2023, 2023, 4127663. https://doi.org/10.1155/2023/4127663
1019Zak, M. T. E.; Papangelakis, V. G.; Allen, D. G., Biosorption of lanthanum by acidophile Euglena mutabilis biofilms and the role of extracellular polymeric substances. Algal Research 2023, 72, 103111. https://doi.org/https://doi.org/10.1016/j.algal.2023.103111
1020Vatandoust, A.; Krishnaswamy, K.; Li, Y. O.; Diosady, L., Triple fortification of salt with iron, iodine and zinc oxide using extrusion. J. Food Eng. 2023, 339, 111258. https://doi.org/https://doi.org/10.1016/j.jfoodeng.2022.111258
1021Gonçalves, M. C. P.; Cansian, A. B. M.; Tardioli, P. W.; Saville, B. A., Production of sugars from mixed hardwoods for use in the synthesis of sugar fatty acid esters catalyzed by immobilized-stabilized derivatives of Candida antarctica lipase B. Biofuels, Bioproducts and Biorefining 2023. https://doi.org/10.1002/bbb.2517
1022Venturelli, O. S.; Wang, H. H.; Estrela, S.; Huang, K. C.; Ledesma-Amaro, R.; Fedorec, A. J. H.; Stecher, B.; Lawson, C. E.; Zarrinpar, A.; Guo, C.-J.; Soyer, O. S., What is the key challenge in engineering microbiomes? Cell Systems 2023, 14 (2), 85-90. https://doi.org/https://doi.org/10.1016/j.cels.2023.01.002
1023Panda, S.; Zhou, J. F. J.; Feigis, M.; Harrison, E.; Ma, X.; Fung Kin Yuen, V.; Mahadevan, R.; Zhou, K., Engineering Escherichia coli to produce aromatic chemicals from ethylene glycol. Metab. Eng. 2023, 79, 38-48. https://doi.org/10.1016/j.ymben.2023.06.012
1024Suchana, S.; Edwards, E.; Mack, E. E.; Lomheim, L.; Melo, N.; Gavazza, S.; Passeport, E., Compatibility of polar organic chemical integrative sampler (POCIS) with compound specific isotope analysis (CSIA) of substituted chlorobenzenes. Sci. Total Environ. 2023, 906, 167628. https://doi.org/10.1016/j.scitotenv.2023.167628
1025Melo, N.; Araújo, S. P.; de Paula Queiroz Kraus, S.; Lomheim, L.; Quintero, P. B.; Mack, E. E.; Edwards, E. A.; Spain, J.; Gavazza, S., Strategies for Bioremediation of Soil from an Industrial Site Exposed to Chlorinated and Nitroaromatic Compounds. Groundwater Monit. Rem. 2023. https://doi.org/10.1111/gwmr.12596
1026Diep, P.; Kell, B.; Yakunin, A.; Hilfinger, A.; Mahadevan, R., Quantifying metal-binding specificity of CcNikZ-II from Clostridium carboxidivorans in the presence of competing metal ions. Anal. Biochem. 2023, 676, 115182. https://doi.org/10.1016/j.ab.2023.115182
1027Khusnutdinova, A. N.; Batyrova, K. A.; Brown, G.; Fedorchuk, T.; Chai, Y. S.; Skarina, T.; Flick, R.; Petit, A. P.; Savchenko, A.; Stogios, P.; Yakunin, A. F., Structural insights into hydrolytic defluorination of difluoroacetate by microbial fluoroacetate dehalogenases. FEBS J. 2023. https://doi.org/10.1111/febs.16903
1028Chen, J.; Liu, Y.; Mahadevan, R., Genetic Engineering of Acidithiobacillus ferridurans Using CRISPR Systems To Mitigate Toxic Release in Biomining. Environ Sci Technol 2023, 57 (33), 12315-12324. https://doi.org/10.1021/acs.est.3c02492
1029Landon-Brace, N.; Li, N. T.; McGuigan, A. P., Exploring New Dimensions of Tumor Heterogeneity: The Application of Single Cell Analysis to Organoid-Based 3D In Vitro Models. Adv Healthc Mater 2023, e2300903. https://doi.org/10.1002/adhm.202300903
1030Mathieu, Y.; Raji, O.; Bellemare, A.; Di Falco, M.; Nguyen, T. T. M.; Viborg, A. H.; Tsang, A.; Master, E.; Brumer, H., Functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation. Biotechnol Biofuels Bioprod 2023, 16 (1), 132. https://doi.org/10.1186/s13068-023-02383-3
1031Skrivergaard, S.; Young, J. F.; Sahebekhtiari, N.; Semper, C.; Venkatesan, M.; Savchenko, A.; Stogios, P. J.; Therkildsen, M.; Rasmussen, M. K., A simple and robust serum-free media for the proliferation of muscle cells. Food Res. Int. 2023, 172, 113194. https://doi.org/https://doi.org/10.1016/j.foodres.2023.113194
1032Saffarionpour, S.; Diosady, L. L., Preparation and characterization of an iron-β-cyclodextrin inclusion complex: factors influencing the host-guest interaction. Food Funct. 2023. https://doi.org/10.1039/d3fo00090g
1033Toth, C. R. A.; Molenda, O.; Nesbø, C.; Luo, F.; Devine, C.; Guo, S.; Chen, X.; Edwards, E. A., Metagenomic and Genomic Sequences from a Methanogenic Benzene-Degrading Consortium. Microbiol Resour Announc 2023, 12 (5), e0134222. https://doi.org/10.1128/mra.01342-22
1034Barghout, R. A.; Xu, Z.; Betala, S.; Mahadevan, R., Advances in generative modeling methods and datasets to design novel enzymes for renewable chemicals and fuels. Curr. Opin. Biotechnol. 2023, 84, 103007. https://doi.org/10.1016/j.copbio.2023.103007
1035Oyewole, A. O.; Diosady, L. L., Evaluating the potential of Hibiscus sabdariffa beverage to address the prevalence of iron deficiency in sub-Saharan Africa. LWT 2023, 188. https://doi.org/10.1016/j.lwt.2023.115433
1036Lin, J. D.; Stogios, P. J.; Abe, K. T.; Wang, A.; MacPherson, J.; Skarina, T.; Gingras, A. C.; Savchenko, A.; Ensminger, A. W., Functional diversification despite structural congruence in the HipBST toxin-antitoxin system of Legionella pneumophila. mBio 2023, 14 (5), e0151023. https://doi.org/10.1128/mbio.01510-23
1037Bordeleau, E.; Stogios, P. J.; Evdokimova, E.; Koteva, K.; Savchenko, A.; Wright, G. D., Mechanistic plasticity in ApmA enables aminoglycoside promiscuity for resistance. Nat. Chem. Biol. 2023. https://doi.org/10.1038/s41589-023-01483-3
1038Liu, J.; Edwards, E.; Van Hamme, J.; Manefield, M.; Higgins, C. P.; Blotevogel, J.; Liu, J.; Lee, L. S., Correspondence on "Defluorination of Perfluorooctanoic Acid (PFOA) and Perfluorooctane Sulfonate (PFOS) by Acidimicrobium sp. Strain A6". Environ Sci Technol 2023, 57 (48), 20440-20442. https://doi.org/10.1021/acs.est.3c06681
1039Bulka, O.; Webb, J.; Dworatzek, S.; Mahadevan, R.; Edwards, E. A., A Multifunctional Dehalobacter? Tandem Chloroform and Dichloromethane Degradation in a Mixed Microbial Culture. Environ Sci Technol 2023, 57 (48), 19912-19920. https://doi.org/10.1021/acs.est.3c06686
1040Raji, O.; Eijsink, V. G. H.; Master, E.; Forsberg, Z., Modularity impacts cellulose surface oxidation by a lytic polysaccharide monooxygenase from Streptomyces coelicolor. Cellulose 2023. https://doi.org/10.1007/s10570-023-05551-8
1041Dahiya, D.; Koitto, T.; Kutvonen, K.; Wang, Y.; Haddad Momeni, M.; de Ruijter, S.; Master, E. R., Fungal loosenin-like proteins boost the cellulolytic enzyme conversion of pretreated wood fiber and cellulosic pulps. Bioresour. Technol. 2023, 394, 130188. https://doi.org/10.1016/j.biortech.2023.130188
1042Robbins, B.; Gaona, A.; Tavasoli, A.; Bergerson, J. A.; Saville, B. A.; MacLean, H. L., Life cycle environmental performance of methanol production through photocatalytic dry methane reforming. J. CO2 Util. 2024, 79. https://doi.org/10.1016/j.jcou.2023.102638
1043Sharan, A. A.; Bellemare, A.; DiFalco, M.; Tsang, A.; Vuong, T. V.; Edwards, E. A.; Master, E. R., Functional screening pipeline to uncover laccase-like multicopper oxidase enzymes that transform industrial lignins. Bioresour. Technol. 2024, 393, 130084. https://doi.org/10.1016/j.biortech.2023.130084
1044Nesbø, C. L.; Fitamo, T. M.; Lee, H.; Edwards, E. A., Metagenomes and metagenome-assembled genomes from a sequentially fed anaerobic digester treating solid organic municipal waste. Microbiol Resour Announc 2024, 13 (1), e0091923. https://doi.org/10.1128/mra.00919-23
1045Potter, N.; Latour, S.; Wong, E. C. N.; Winnik, M. A.; Jackson, H. W.; McGuigan, A. P.; Nitz, M., Design Parameters for a Mass Cytometry Detectable HaloTag Ligand. Bioconjugate Chemistry 2024, 35 (1), 80-91. https://doi.org/10.1021/acs.bioconjchem.3c00434
1046Hiltunen, S.; Sapkota, J.; Ioannou, E.; Haddad Momeni, M.; Master, E.; Ristolainen, M., Comparative assessment of chemical and biochemical approaches for the activation of lignocellulosic materials and emerging opportunities for expansin-related proteins. Cellulose 2024, 31 (1), 147-168. https://doi.org/10.1007/s10570-023-05637-3
1047Chan, Y. K. K.; Sodhi, R. N. S.; Cheng, Y.-L.; Diosady, L. L., Characterization of granular micronutrient premixes for food fortification. J. Food Process Eng. 2024, 47 (2), e14543. https://doi.org/https://doi.org/10.1111/jfpe.14543
1048Leshuk, T. M. C.; Young, Z. W.; Wilson, B.; Chen, Z. Q.; Smith, D. A.; Lazaris, G.; Gopanchuk, M.; McLay, S.; Seelemann, C. A.; Paradis, T.; Bekele, A.; Guest, R.; Massara, H.; White, T.; Zubot, W.; Letinski, D. J.; Redman, A. D.; Allen, D. G.; Gu, F., A Light Touch: Solar Photocatalysis Detoxifies Oil Sands Process-Affected Waters Prior to Significant Treatment of Naphthenic Acids. ACS ES&T Water 2024. https://doi.org/10.1021/acsestwater.3c00616
1049Feng, X.; Hong, S.; Zhao, H.; Vuong, T. V.; Master, E. R., Biocatalytic cascade to polysaccharide amination. Biotechnol Biofuels Bioprod 2024, 17 (1), 34. https://doi.org/10.1186/s13068-024-02477-6
1050Syriste, L.; Patel, D. T.; Stogios, P. J.; Skarina, T.; Patel, D.; Savchenko, A., An acetyltransferase effector conserved across Legionella species targets the eukaryotic eIF3 complex to modulate protein translation. mBio 2024, 15 (3), e0322123. https://doi.org/10.1128/mbio.03221-23
1051Kastenhofer, J.; Spadiut, O.; Papangelakis, V. G.; Allen, D. G., Roles of pH and phosphate in rare earth element biosorption with living acidophilic microalgae. Appl Microbiol Biotechnol 2024, 108 (1), 262. https://doi.org/10.1007/s00253-024-13068-8
1052Pattisapu, J. V.; Manda, V. V.; Kottakki, M. N. R.; Kajana, P. M.; Kancherla, V.; Bhaganagarapu, H. R.; Veerappan, V.; Ediga, A.; Mannar, V.; Diosady, L.; Oakley, G. P., Jr., Folic Acid-Fortified Iodized Salt and Serum Folate Levels in Reproductive-Aged Women of Rural India: A Nonrandomized Controlled Trial. JAMA Netw Open 2024, 7 (3), e241777. https://doi.org/10.1001/jamanetworkopen.2024.1777
1053Zhao, H.; Karppi, J.; Mototsune, O.; Poshina, D.; Svartström, J.; Nguyen, T. T. M.; Vo, T. M.; Tsang, A.; Master, E.; Tenkanen, M., Substrate specificity mapping of fungal CAZy AA3_2 oxidoreductases. Biotechnol Biofuels Bioprod 2024, 17 (1), 47. https://doi.org/10.1186/s13068-024-02491-8
1054Diep, P.; Stogios, P. J.; Evdokimova, E.; Savchenko, A.; Mahadevan, R.; Yakunin, A. F., Ni(II)-binding affinity of CcNikZ-II and its homologs: the role of the HH-prong and variable loop revealed by structural and mutational studies. FEBS J. 2024. https://doi.org/10.1111/febs.17125
1055Sun, J.; Yang, M. I.; Peng, J.; Khan, I.; Lopez, J. J.; Chan, R.; Edwards, E. A.; Peng, H., Underestimation of SARS-CoV-2 in wastewater due to single or double mutations in the N1 qPCR probe binding region. Water Res X 2024, 22, 100221. https://doi.org/10.1016/j.wroa.2024.100221
1056Garieri, T.; Allen, D. G.; Gao, W.; Liao, B., A review of emerging membrane-based microalgal-bacterial processes for wastewater treatment: Process configurations, biological and membrane performance, and perspectives. Sci. Total Environ. 2024, 927, 172141. https://doi.org/10.1016/j.scitotenv.2024.172141
1057Cadavid, J. L.; Li, N. T.; McGuigan, A. P., Bridging systems biology and tissue engineering: Unleashing the full potential of complex 3D in vitro tissue models of disease. Biophys Rev (Melville) 2024, 5 (2), 021301. https://doi.org/10.1063/5.0179125
1058Haddad Momeni, M.; Zitting, A.; Jäämuru, V.; Turunen, R.; Penttilä, P.; Buchko, G. W.; Hiltunen, S.; Maiorova, N.; Koivula, A.; Sapkota, J.; Marjamaa, K.; Master, E. R., Insights into the action of phylogenetically diverse microbial expansins on the structure of cellulose microfibrils. Biotechnol Biofuels Bioprod 2024, 17 (1), 56. https://doi.org/10.1186/s13068-024-02500-w
1059Saffarionpour, S.; Diosady, L. L., Cyclodextrins and their potential applications for delivering vitamins, iron, and iodine for improving micronutrient status. Drug Deliv Transl Res 2024. https://doi.org/10.1007/s13346-024-01586-x
1060Pham, C.; Nasr, M. A.; Skarina, T.; Di Leo, R.; Kwan, D. H.; Martin, V. J. J.; Stogios, P. J.; Mahadevan, R.; Savchenko, A., Functional and structural characterization of an IclR family transcription factor for the development of dicarboxylic acid biosensors. FEBS J. 2024. https://doi.org/10.1111/febs.17149
1061Goitom, E.; Ariano, S.; Gilbride, K.; Yang, M. I.; Edwards, E. A.; Peng, H.; Dannah, N.; Farahbakhsh, F.; Hataley, E.; Sarvi, H.; Sun, J.; Waseem, H.; Oswald, C., Identification of environmental and methodological factors driving variability of Pepper Mild Mottle Virus (PMMoV) across three wastewater treatment plants in the City of Toronto. Sci. Total Environ. 2024, 932, 172917. https://doi.org/10.1016/j.scitotenv.2024.172917
1062Pham, C.; Stogios, P. J.; Savchenko, A.; Mahadevan, R., Computation-guided transcription factor biosensor specificity engineering for adipic acid detection. Computational and Structural Biotechnology Journal 2024, 23, 2211-2219. https://doi.org/10.1016/j.csbj.2024.05.002
1063Zak, M. T. E.; Carunungan, N. A. R.; Papangelakis, V. G.; Allen, D. G., Desorption of rare earth elements biosorbed on Euglena mutabilis suspensions and biofilms. Can. J. Chem. Eng. 2024. https://doi.org/10.1002/cjce.25344
1064Choudhary, R.; Mahadevan, R., DyMMM-LEAPS: An ML-based framework for modulating evenness and stability in synthetic microbial communities. Biophys. J. 2024. https://doi.org/10.1016/j.bpj.2024.05.006
1065Meyer, T.; Yang, M. I.; Nesbø, C. L.; Master, E. R.; Edwards, E. A., Microbial Community Organization during Anaerobic Pulp and Paper Mill Wastewater Treatment. ACS ES&T Engineering 2024. https://doi.org/10.1021/acsestengg.3c00554
1066Choudhary, R.; Mahadevan, R., FOCUS on NOD2: Advancing IBD Drug Discovery with a User-Informed Machine Learning Framework. ACS Med. Chem. Lett. 2024. https://doi.org/10.1021/acsmedchemlett.4c00148
1067Pham, C.; Stogios, P. J.; Savchenko, A.; Mahadevan, R., Design and Characterization of a Generalist Biosensor for Indole Derivatives. ACS Synth Biol 2024. https://doi.org/10.1021/acssynbio.3c00736
1068Bulka, O.; Picott, K.; Mahadevan, R.; Edwards, E. A., From mec cassette to rdhA: a key Dehalobacter genomic neighborhood in a chloroform and dichloromethane-transforming microbial consortium. Appl Environ Microbiol 2024, 90 (6), e0073224. https://doi.org/10.1128/aem.00732-24
1069D'Aoust, P. M.; Hegazy, N.; Ramsay, N. T.; Yang, M. I.; Dhiyebi, H. A.; Edwards, E.; Servos, M. R.; Ybazeta, G.; Habash, M.; Goodridge, L.; Poon, A.; Arts, E.; Brown, R. S.; Payne, S. J.; Kirkwood, A.; Simmons, D.; Desaulniers, J. P.; Ormeci, B.; Kyle, C.; Bulir, D.; Charles, T.; McKay, R. M.; Gilbride, K.; Oswald, C.; Peng, H.; Pileggi, V.; Wang, M. L.; Tong, A.; Orellano, D.; DeGroot, C. T.; Delatolla, R., SARS-CoV-2 viral titer measurements in Ontario, Canada wastewaters throughout the COVID-19 pandemic. Sci Data 2024, 11 (1), 656. https://doi.org/10.1038/s41597-024-03414-w
1070Mototsune, O. M.; Hong, S. H.; Naguib, H. E.; Master, E. R., Enzymatically Oxidized Carbohydrates As Dicarbonyl Biobased Cross-Linkers for Polyamines. Biomacromolecules 2024, 25 (7), 4428-4439. https://doi.org/10.1021/acs.biomac.4c00457
1071Suchana, S.; Araujo, S. P.; Lomheim, L.; Mack, E. E.; Spain, J. C.; Edwards, E.; Passeport, E., Compound-Specific Carbon, Nitrogen, and Hydrogen Isotope Analysis to Characterize Aerobic Biodegradation of 2,3-Dichloroaniline by a Mixed Enrichment Culture. Environ Sci Technol 2024. https://doi.org/10.1021/acs.est.4c02173
1072Rjaibi, S. T.; Jacques, E.; Ni, J.; Xu, B.; Kouthouridis, S.; Sitolle, J.; Lad, H.; Gulati, N.; Li, N. T.; Ahn, H.; Ginsberg, H. J.; Zhang, B.; Grand, F. L.; Gilbert, P. M.; McGuigan, A. P., A Cryopreservation Strategy for Myoblast Storage in Paper-Based Scaffolds for Inter-Laboratory Studies of Skeletal Muscle Health. Adv. Mater. Interfaces 2024. https://doi.org/10.1002/admi.202400382
1073Barbut, F. R.; Cavel, E.; Donev, E. N.; Gaboreanu, I.; Urbancsok, J.; Pandey, G.; Demailly, H.; Jiao, D.; Yassin, Z.; Derba-Maceluch, M.; Master, E. R.; Scheepers, G.; Gutierrez, L.; Mellerowicz, E. J., Integrity of xylan backbone affects plant responses to drought. Front Plant Sci 2024, 15, 1422701. https://doi.org/10.3389/fpls.2024.1422701
1074Bulka, O.; Edwards, E. A., Metagenomic sequences from anaerobic chloroform and dichloromethane degrading microbial communities. Microbiol Resour Announc 2024, e0039124. https://doi.org/10.1128/mra.00391-24
1075Siluvai Antony, P.; Vanderghem, C.; MacLean, H. L.; Saville, B. A.; Posen, I. D., A framework to estimate national biofuel potential by siting production facilities: a case study for canola sustainable aviation fuel in Canada. Energy Advances 2024, 3 (7), 1612-1631. https://doi.org/10.1039/D3YA00579H
1076Co, I. L.; Fomina, A.; Nurse, M.; McGuigan, A. P., Applications and evolution of 3D cancer-immune cell models. Trends Biotechnol. 2024. https://doi.org/10.1016/j.tibtech.2024.06.008
1077Aqeel, H.; Brei, E.; Allen, D. G.; Liss, S. N., Distribution of extracellular adhesins in environmental biofilms and flocs: Reimagining the microbial structure. Chemosphere 2024, 363, 142928. https://doi.org/10.1016/j.chemosphere.2024.142928
1078Semper, C.; Watanabe, N.; Karimullina, E.; Patel, D. T.; Di Leo, R.; Castellanos, M.; Patel, D. H.; Chaconas, G.; Savchenko, A., Structure analysis of the telomere resolvase from the Lyme disease spirochete Borrelia garinii reveals functional divergence of its C-terminal domain. Nucleic Acids Res. 2024, 52 (14), 8431-8442. https://doi.org/10.1093/nar/gkae580
1079Siddiqui, J.; Dialani, G. J.; Diosady, L. L., Designing iron-ethyl cellulose microparticles to prevent unwanted color changes during iron fortification of milk tea. J. Food Process Eng. 2024, 47 (8), e14712. https://doi.org/https://doi.org/10.1111/jfpe.14712
1080Mobin, L.; Diosady, L. L.; Haq, M. A., Enhancing vitamin A stability using saponin-chitosan polyelectrolytes coating: Optimization, haracterization, and controlled release. J. Food Sci. 2024. https://doi.org/10.1111/1750-3841.17320
1081Phillips, E.; Picott, K.; Kümmel, S.; Bulka, O.; Edwards, E.; Wang, P.-H.; Gehre, M.; Nijenhuis, I.; Lollar, B. S., Vitamin B12 as a source of variability in isotope effects for chloroform biotransformation by Dehalobacter. MicrobiologyOpen 2024, 13 (4), e1433. https://doi.org/https://doi.org/10.1002/mbo3.1433
1082Di Pede, E.; Kolade, O.; Saville, B., Impact of enzymatically derived manno-oligosaccharides on the growth of select lactobacillus strains under aerobic and anaerobic conditions. Bioactive Carbohydrates and Dietary Fibre 2024, 32, 100445. https://doi.org/https://doi.org/10.1016/j.bcdf.2024.100445
1083Yan, S.; Cheng, K. Y.; Bohu, T.; Ginige, M. P.; Morris, C.; Lomheim, L.; Yang, I.; Edwards, E.; Zheng, G.; Zhou, L.; Kaksonen, A. H., Changes in microbial communities during high-rate microbial selenate reduction in an up-flow anaerobic fluidized bed reactor. Chemosphere 2024, 364, 143224. https://doi.org/10.1016/j.chemosphere.2024.143224
1084Xiao, J. Z.; Nesbø¸, C. L.; Molenda, O.; Toth, C. R. A.; Edwards, E. A., Draft genome of an anaerobic nitrate-reducing, benzene-degrading member of the order Thermincolales. Microbiol Resour Announc 2024, e0029524. https://doi.org/10.1128/mra.00295-24
1085Urbanus, M. L.; Zheng, T. M.; Khusnutdinova, A. N.; Banh, D.; O'Connor Mount, H.; Gupta, A.; Stogios, P. J.; Savchenko, A.; Isberg, R. R.; Yakunin, A. F.; Ensminger, A. W., A random mutagenesis screen enriched for missense mutations in bacterial effector proteins. G3 (Bethesda) 2024, 14 (9). https://doi.org/10.1093/g3journal/jkae158
1086Khusnutdinova, A. N.; Tran, H.; Devlekar, S.; Distaso, M. A.; Kublanov, I. V.; Skarina, T.; Stogios, P.; Savchenko, A.; Ferrer, M.; Golyshina, O. V.; Yakunin, A. F.; Golyshin, P. N., Moderately thermostable GH1 β-glucosidases from hyperacidophilic archaeon Cuniculiplasma divulgatum S5. FEMS Microbiol. Ecol. 2024, 100 (9). https://doi.org/10.1093/femsec/fiae114
1087Agena, E.; Gois, I. M.; Bowers, C. M.; Mahadevan, R.; Scarborough, M. J.; Lawson, C. E., Evaluating the feasibility of medium-chain oleochemical synthesis using microbial chain elongation. J Ind Microbiol Biotechnol 2024, 51. https://doi.org/10.1093/jimb/kuae027
1088Anih, C. E.; Kumar, P.; Chen, B.-K.; Dueik, V.; Carré, D.; Diosady, L. L., Production and characterisation of protein isolates from Chilean granado beans (Phaseolus vulgaris L.). International Journal of Food Science & Technology 2024, 59 (11), 8321-8330. https://doi.org/https://doi.org/10.1111/ijfs.17545
1089Bulka, O.; Edwards, E. A., Two distinct Dehalobacter metagenome-assembled genomes from anaerobic chloroform and dichloromethane degrading consortia. Microbiology Resource Announcements 2024, 0 (0), e00803-24. https://doi.org/10.1128/mra.00803-24
1090Bulka, O.; Edwards, E., Metagenome from ACT-3/CF: an anaerobic chloroform-degrading microbial community. Microbiology Resource Announcements 2024, 0 (0), e00674-24. https://doi.org/10.1128/mra.00674-24
1091Faurschou, K. L.; Clasky, A. J.; Watchorn, J.; Tram Su, J.; Li, N. T.; McGuigan, A. P.; Gu, F. X., Lateral Assessment of Mucomimetic Hydrogels to Evaluate Correlation between Microscopic and Macroscopic Properties. Macromol. Biosci. 2024, e2400146. https://doi.org/10.1002/mabi.202400146
1092Lemak, S.; Brown, G.; Makarova, K. S.; Koonin, E. V.; Yakunin, A. F., Biochemical plasticity of the Escherichia coli CRISPR Cascade revealed by in vitro reconstitution of Cascade activities from purified Cas proteins. FEBS J. 2024. https://doi.org/10.1111/febs.17295
1093Wu, N. C.; Quevedo, R.; Nurse, M.; Hezaveh, K.; Liu, H.; Sun, F.; Muffat, J.; Sun, Y.; Simmons, C. A.; McGaha, T. L.; Prinos, P.; Arrowsmith, C. H.; Ailles, L.; D'Arcangelo, E.; McGuigan, A. P., The use of a multi-metric readout screen to identify EHMT2/G9a-inhibition as a modulator of cancer-associated fibroblast activation state. Biomaterials 2024, 314, 122879. https://doi.org/10.1016/j.biomaterials.2024.122879
1094Khusnutdinova, A. N.; Batyrova, K. A.; Wang, P.-H.; Flick, R.; Edwards, E. A.; Yakunin, A. F., Enzyme cascades for in vitro and in vivo FMN prenylation and UbiD (de)carboxylase activation under aerobic conditions. In Methods Enzymol., Academic Press: 2024. https://doi.org/https://doi.org/10.1016/bs.mie.2024.10.015
1095Sivan, P.; Urbancsok, J.; Donev, E. N.; Derba-Maceluch, M.; Barbut, F. R.; Yassin, Z.; Gandla, M. L.; Mitra, M.; Heinonen, S. E.; Šimura, J.; Cermanová, K.; Karady, M.; Scheepers, G.; Jönsson, L. J.; Master, E. R.; Vilaplana, F.; Mellerowicz, E. J., Modification of xylan in secondary walls alters cell wall biosynthesis and wood formation programs and improves saccharification. Plant Biotechnol. J. 2024. https://doi.org/10.1111/pbi.14487
1096Xie, L.; Yuan, L.; Sun, J.; Yang, M. I.; Khan, I.; Jaramillo Lopez, J.; Gong, Y.; Nair, P.; Hao, C.; Helm, P.; Barrett, H.; Edwards, E. A.; Peng, H., Compound Class-Specific Temporal Trends (2021–2023) of Tire Wear Compounds in Suspended Solids from Toronto Wastewater Treatment Plants. ACS ES&T Water 2024. https://doi.org/10.1021/acsestwater.4c00705
1097Ma, H.; Khusnutdinova, A. N.; Lemak, S.; Chernikova, T. N.; Golyshina, O. V.; Almendral, D.; Ferrer, M.; Golyshin, P. N.; Yakunin, A. F., Polyesterase activity is widespread in the family IV carboxylesterases from bacteria. J. Hazard. Mater. 2024, 481, 136540. https://doi.org/10.1016/j.jhazmat.2024.136540
1098Chan, Y. K. K.; Han, F.; Cheng, Y. L.; Diosady, L. L., Thermodynamic analysis of the effect of palm stearin on fully hydrogenated soybean oil coatings in granular micronutrient premixes. Food Chem. 2024, 466, 142119. https://doi.org/10.1016/j.foodchem.2024.142119
1099Aliabbasi, N.; Diosady, L. L.; Emam-Djomeh, Z., Purification and Characterization of Pinto Bean Protein Using Membrane Technology. Food Science & Nutrition 2024, n/a (n/a). https://doi.org/https://doi.org/10.1002/fsn3.4511
1100Patel, D. T.; Stogios, P. J.; Jaroszewski, L.; Urbanus, M. L.; Sedova, M.; Semper, C.; Le, C.; Takkouche, A.; Ichii, K.; Innabi, J.; Patel, D. H.; Ensminger, A. W.; Godzik, A.; Savchenko, A., Global atlas of predicted functional domains in Legionella pneumophila Dot/Icm translocated effectors. Mol. Syst. Biol. 2024. https://doi.org/10.1038/s44320-024-00076-z
1101Bulka, O.; Mahadevan, R.; Edwards, E. A., Pangenomic insights into Dehalobacter evolution and acquisition of functional genes for bioremediation. Microb Genom 2024, 10 (11). https://doi.org/10.1099/mgen.0.001324
1102Khatir, B.; Serles, P.; Wen, T.; Vuong, T. V.; Shayesteh, A.; Au, S.; Sinton, D.; Master, E. R.; Filleter, T.; Golovin, K., Autophobic polydimethylsiloxane nanodroplets enable abrasion-tolerant omniphobic surfaces. Chem. Eng. J. 2024, 502, 157718. https://doi.org/https://doi.org/10.1016/j.cej.2024.157718
1103Khatir, B.; Lin, A.; Vuong, T. V.; Serles, P.; Shayesteh, A.; Hsu, N. S. Y.; Sinton, D.; Tran, H.; Master, E. R.; Filleter, T.; Golovin, K., Molecular Structure of Omniphobic, Surface-Grafted Polydimethylsiloxane Chains. Small 2024, e2406089. https://doi.org/10.1002/smll.202406089
1104Nesbø¸, C. L.; Yang, M. I.; Sharan, A. A.; Meyer, T.; Edwards, E. A., Metagenomes and metagenome assembled genomes from anaerobic digesters at three Canadian pulp and paper mills. Microbiol Resour Announc 2024, 13 (11), e0056124. https://doi.org/10.1128/mra.00561-24
1105Picott, K. J.; Edwards, E. A., Contrasting Kinetics of Highly Similar Chloroalkane Reductive Dehalogenases. Environ Sci Technol 2024. https://doi.org/10.1021/acs.est.4c07149

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